Wall clock time and date at job start Sat Apr 11 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 120.00111 * 2 1 4 4 C 1.53002 * 109.46934 * 270.00068 * 3 2 1 5 5 N 1.46495 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00095 * 180.27252 * 5 4 3 7 7 O 1.21594 * 119.99690 * 359.72278 * 6 5 4 8 8 C 1.47532 * 120.00024 * 179.72007 * 6 5 4 9 9 C 1.39670 * 120.19847 * 0.02562 * 8 6 5 10 10 C 1.37820 * 119.91890 * 179.97438 * 9 8 6 11 11 C 1.38573 * 120.32831 * 0.02562 * 10 9 8 12 12 C 1.38025 * 120.39895 * 0.02562 * 11 10 9 13 13 C 1.38836 * 120.07033 * 359.68101 * 12 11 10 14 14 O 1.35525 * 120.16327 * 180.29712 * 13 12 11 15 15 C 1.34813 * 116.99864 * 354.40229 * 14 13 12 16 16 H 1.08004 * 120.00166 * 5.06080 * 15 14 13 17 17 C 1.38693 * 120.00063 * 185.06551 * 15 14 13 18 18 N 1.31521 * 119.99925 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47228 * 59.99964 * 19 17 15 21 21 H 1.48498 * 109.47368 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47510 * 299.99751 * 19 17 15 23 23 C 1.39674 * 120.00482 * 179.97438 * 2 1 3 24 24 C 1.38912 * 120.07998 * 179.72353 * 23 2 1 25 25 C 1.38101 * 119.92498 * 179.76633 * 24 23 2 26 26 C 1.38281 * 120.07625 * 0.51540 * 25 24 23 27 27 C 1.38291 * 120.15019 * 359.73850 * 26 25 24 28 28 C 1.38104 * 120.07174 * 0.02562 * 27 26 25 29 29 H 1.09010 * 109.46927 * 90.00245 * 1 2 3 30 30 H 1.08997 * 109.47163 * 209.99847 * 1 2 3 31 31 H 1.08995 * 109.47376 * 330.00593 * 1 2 3 32 32 H 1.08997 * 109.46858 * 149.99750 * 3 2 1 33 33 H 1.09000 * 109.46901 * 29.99621 * 3 2 1 34 34 H 1.08995 * 109.47584 * 59.99182 * 4 3 2 35 35 H 1.09000 * 109.46962 * 299.99516 * 4 3 2 36 36 H 0.97001 * 119.99820 * 359.97438 * 5 4 3 37 37 H 1.07996 * 120.03784 * 359.97438 * 9 8 6 38 38 H 1.08010 * 119.83681 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.80532 * 180.02562 * 11 10 9 40 40 H 1.07998 * 119.96677 * 179.97438 * 12 11 10 41 41 H 0.97006 * 119.99983 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.03172 * 0.02562 * 24 23 2 43 43 H 1.08001 * 119.96141 * 180.25309 * 25 24 23 44 44 H 1.07994 * 119.92827 * 179.71959 * 26 25 24 45 45 H 1.08002 * 119.96534 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.03440 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4426 6 6 3.5177 3.5651 -2.6098 7 8 3.2134 3.0387 -3.6628 8 6 4.2506 4.8456 -2.6098 9 6 4.6026 5.4535 -1.4026 10 6 5.2876 6.6494 -1.4093 11 6 5.6292 7.2534 -2.6088 12 6 5.2871 6.6648 -3.8095 13 6 4.6024 5.4572 -3.8221 14 8 4.2708 4.8746 -4.9999 15 6 4.5311 5.5734 -6.1230 16 1 5.0578 6.5145 -6.0636 17 6 4.1226 5.0839 -7.3547 18 7 3.4816 3.9378 -7.4271 19 14 4.4827 6.0526 -8.9108 20 1 5.9505 6.2209 -9.0606 21 1 3.9466 5.3193 -10.0856 22 1 3.8377 7.3874 -8.8235 23 6 2.1634 -1.2096 0.0005 24 6 3.5525 -1.2114 -0.0053 25 6 4.2399 -2.4092 0.0002 26 6 3.5470 -3.6058 0.0006 27 6 2.1641 -3.6077 0.0011 28 6 1.4704 -2.4135 0.0006 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5138 34 1 1.5002 1.8406 -1.9564 35 1 3.0416 0.9508 -1.9563 36 1 3.4280 3.3988 -0.6025 37 1 4.3383 4.9871 -0.4651 38 1 5.5588 7.1186 -0.4750 39 1 6.1664 8.1904 -2.6042 40 1 5.5565 7.1419 -4.7402 41 1 3.1962 3.5952 -8.2886 42 1 4.0943 -0.2771 -0.0098 43 1 5.3199 -2.4112 -0.0002 44 1 4.0869 -4.5411 0.0003 45 1 1.6259 -4.5441 0.0010 46 1 0.3905 -2.4157 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194079539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:09 Heat of formation + Delta-G solvation = 10.507892 kcal Electronic energy + Delta-G solvation = -28243.956992 eV Core-core repulsion = 24292.926215 eV Total energy + Delta-G solvation = -3951.030777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84783 -39.49070 -38.11250 -36.62478 -36.32417 -34.14501 -32.34327 -31.37393 -30.80799 -29.98151 -28.97550 -28.82686 -25.91469 -25.33292 -23.68297 -22.59897 -22.12860 -21.30966 -20.75916 -19.84965 -18.05489 -17.88807 -17.53195 -16.21752 -16.02380 -15.67291 -15.30707 -15.08794 -14.73427 -14.51036 -14.36836 -14.18677 -14.03142 -13.85234 -13.77123 -13.54355 -13.47614 -12.78895 -12.69818 -12.65989 -12.49833 -12.20960 -12.05044 -11.71547 -11.50663 -11.44492 -11.23726 -11.13517 -10.89076 -10.85116 -10.80742 -10.48080 -9.99568 -9.58331 -8.98118 -8.88514 -8.86905 -8.58773 -8.27916 -7.42716 -7.31709 -6.44240 -4.04525 1.38318 1.54335 1.70880 2.31123 2.81448 3.11592 3.13662 3.16280 3.74800 3.80130 3.86763 3.93555 4.62336 4.67433 4.73755 4.88731 4.92609 5.05878 5.06571 5.11089 5.17190 5.23364 5.34417 5.40538 5.45817 5.49266 5.52817 5.57919 5.64551 5.71733 5.86200 5.97211 5.98875 6.10695 6.13375 6.22622 6.42956 6.55288 6.58349 6.68047 6.77253 6.88351 6.90662 7.04977 7.11557 7.23076 7.28447 7.36816 7.68613 7.91555 8.09615 8.94944 9.09141 9.67232 10.69357 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002560 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.484522 B =10933.902057 C =12245.584997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.628 5.628 3 C 0.115 3.885 4 C 0.106 3.894 5 N -0.744 5.744 6 C 0.554 3.446 7 O -0.499 6.499 8 C -0.227 4.227 9 C -0.038 4.038 10 C -0.231 4.231 11 C -0.051 4.051 12 C -0.238 4.238 13 C 0.188 3.812 14 O -0.123 6.123 15 C -0.405 4.405 16 H 0.094 0.906 17 C 0.045 3.955 18 N -0.832 5.832 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C 0.216 3.784 24 C -0.194 4.194 25 C -0.072 4.072 26 C -0.182 4.182 27 C -0.075 4.075 28 C -0.198 4.198 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.391 0.609 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.272 0.728 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -6.951 17.674 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.339 5.339 3 C -0.009 4.009 4 C -0.020 4.020 5 N -0.401 5.401 6 C 0.344 3.656 7 O -0.373 6.373 8 C -0.232 4.232 9 C -0.057 4.057 10 C -0.250 4.250 11 C -0.069 4.069 12 C -0.257 4.257 13 C 0.129 3.871 14 O -0.021 6.021 15 C -0.480 4.480 16 H 0.111 0.889 17 C -0.163 4.163 18 N -0.463 5.463 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.194 1.194 23 C 0.115 3.885 24 C -0.216 4.216 25 C -0.091 4.091 26 C -0.202 4.202 27 C -0.094 4.094 28 C -0.221 4.221 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.225 0.775 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.052 -7.602 16.574 18.488 hybrid contribution 0.337 0.844 -0.387 0.987 sum -2.715 -6.758 16.187 17.750 Atomic orbital electron populations 1.21677 0.79314 1.02496 1.01577 1.46272 1.04920 1.02566 1.80143 1.21576 0.97776 0.85297 0.96253 1.21607 0.97333 0.86344 0.96670 1.45767 1.61232 1.24243 1.08830 1.18232 0.79427 0.84774 0.83192 1.90960 1.52301 1.63808 1.30184 1.18831 1.13266 0.99174 0.91911 1.20745 0.95299 0.94585 0.95092 1.20457 1.08717 0.98616 0.97252 1.20897 0.95974 0.97821 0.92256 1.21158 1.07324 0.98366 0.98836 1.19283 0.90815 0.90134 0.86907 1.84176 1.67445 1.40133 1.10361 1.21452 1.38680 1.05352 0.82553 0.88910 1.25388 0.95818 0.96449 0.98656 1.70124 1.32780 1.17257 1.26160 0.85798 0.79081 0.79098 0.79540 1.19356 1.20147 1.19362 1.17849 0.91268 0.85607 0.93771 1.20763 0.92190 0.98906 1.09760 1.20912 0.99538 0.91987 0.96664 1.20901 0.94288 0.97805 1.07170 1.20868 0.94253 0.97092 0.97189 1.20672 0.99573 0.91149 1.10663 0.93085 0.91318 0.91411 0.90102 0.90185 0.91748 0.91544 0.77460 0.87082 0.87281 0.87186 0.85081 0.91793 0.85921 0.86230 0.86643 0.86396 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.23 59.84 0.61 1.39 16 2 N -0.63 -6.68 3.01 -179.62 -0.54 -7.22 16 3 C 0.12 1.17 5.31 -4.04 -0.02 1.15 16 4 C 0.11 1.54 6.00 -4.04 -0.02 1.51 16 5 N -0.74 -11.69 5.51 -61.35 -0.34 -12.03 16 6 C 0.55 12.20 7.76 -12.47 -0.10 12.10 16 7 O -0.50 -13.87 15.17 -16.57 -0.25 -14.12 16 8 C -0.23 -4.90 5.89 -104.81 -0.62 -5.52 16 9 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 10 C -0.23 -3.73 10.02 -39.61 -0.40 -4.13 16 11 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 12 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 13 C 0.19 4.69 6.66 -38.60 -0.26 4.43 16 14 O -0.12 -3.66 7.84 -21.06 -0.17 -3.82 16 15 C -0.40 -11.51 9.49 30.90 0.29 -11.21 16 16 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 17 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 18 N -0.83 -25.29 13.67 55.48 0.76 -24.53 16 19 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 C 0.22 2.54 6.55 -83.79 -0.55 1.99 16 24 C -0.19 -2.30 9.20 -39.38 -0.36 -2.66 16 25 C -0.07 -0.79 10.04 -39.62 -0.40 -1.19 16 26 C -0.18 -1.88 10.04 -39.55 -0.40 -2.28 16 27 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 28 C -0.20 -2.13 9.21 -39.38 -0.36 -2.50 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.07 0.49 6.20 -51.93 -0.32 0.17 16 31 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 32 H 0.08 0.75 6.21 -51.93 -0.32 0.43 16 33 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.39 4.68 6.50 -40.82 -0.27 4.42 16 37 H 0.11 1.39 6.40 -52.49 -0.34 1.06 16 38 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 1.39 6.15 -52.49 -0.32 1.07 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 1.09 6.14 -52.49 -0.32 0.77 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -36.05 383.99 -9.77 -45.82 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.80 Total: 9.19 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -4.20 Total: -14.67 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.12 Total: -43.78 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.42 Total: -17.94 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.05 -9.77 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194079539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.332 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds