Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 120.00111 * 2 1 4 4 C 1.53002 * 109.46934 * 270.00068 * 3 2 1 5 5 N 1.46495 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00095 * 180.27252 * 5 4 3 7 7 O 1.21594 * 119.99690 * 359.72278 * 6 5 4 8 8 C 1.47532 * 120.00024 * 179.72007 * 6 5 4 9 9 C 1.39670 * 120.19847 * 0.02562 * 8 6 5 10 10 C 1.37820 * 119.91890 * 179.97438 * 9 8 6 11 11 C 1.38573 * 120.32831 * 0.02562 * 10 9 8 12 12 C 1.38025 * 120.39895 * 0.02562 * 11 10 9 13 13 C 1.38836 * 120.07033 * 359.68101 * 12 11 10 14 14 O 1.35525 * 120.16327 * 180.29712 * 13 12 11 15 15 C 1.34813 * 116.99864 * 354.40229 * 14 13 12 16 16 H 1.08004 * 120.00166 * 5.06080 * 15 14 13 17 17 C 1.38693 * 120.00063 * 185.06551 * 15 14 13 18 18 N 1.31521 * 119.99925 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47228 * 59.99964 * 19 17 15 21 21 H 1.48498 * 109.47368 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47510 * 299.99751 * 19 17 15 23 23 C 1.39674 * 120.00482 * 179.97438 * 2 1 3 24 24 C 1.38912 * 120.07998 * 179.72353 * 23 2 1 25 25 C 1.38101 * 119.92498 * 179.76633 * 24 23 2 26 26 C 1.38281 * 120.07625 * 0.51540 * 25 24 23 27 27 C 1.38291 * 120.15019 * 359.73850 * 26 25 24 28 28 C 1.38104 * 120.07174 * 0.02562 * 27 26 25 29 29 H 1.09010 * 109.46927 * 90.00245 * 1 2 3 30 30 H 1.08997 * 109.47163 * 209.99847 * 1 2 3 31 31 H 1.08995 * 109.47376 * 330.00593 * 1 2 3 32 32 H 1.08997 * 109.46858 * 149.99750 * 3 2 1 33 33 H 1.09000 * 109.46901 * 29.99621 * 3 2 1 34 34 H 1.08995 * 109.47584 * 59.99182 * 4 3 2 35 35 H 1.09000 * 109.46962 * 299.99516 * 4 3 2 36 36 H 0.97001 * 119.99820 * 359.97438 * 5 4 3 37 37 H 1.07996 * 120.03784 * 359.97438 * 9 8 6 38 38 H 1.08010 * 119.83681 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.80532 * 180.02562 * 11 10 9 40 40 H 1.07998 * 119.96677 * 179.97438 * 12 11 10 41 41 H 0.97006 * 119.99983 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.03172 * 0.02562 * 24 23 2 43 43 H 1.08001 * 119.96141 * 180.25309 * 25 24 23 44 44 H 1.07994 * 119.92827 * 179.71959 * 26 25 24 45 45 H 1.08002 * 119.96534 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.03440 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4426 6 6 3.5177 3.5651 -2.6098 7 8 3.2134 3.0387 -3.6628 8 6 4.2506 4.8456 -2.6098 9 6 4.6026 5.4535 -1.4026 10 6 5.2876 6.6494 -1.4093 11 6 5.6292 7.2534 -2.6088 12 6 5.2871 6.6648 -3.8095 13 6 4.6024 5.4572 -3.8221 14 8 4.2708 4.8746 -4.9999 15 6 4.5311 5.5734 -6.1230 16 1 5.0578 6.5145 -6.0636 17 6 4.1226 5.0839 -7.3547 18 7 3.4816 3.9378 -7.4271 19 14 4.4827 6.0526 -8.9108 20 1 5.9505 6.2209 -9.0606 21 1 3.9466 5.3193 -10.0856 22 1 3.8377 7.3874 -8.8235 23 6 2.1634 -1.2096 0.0005 24 6 3.5525 -1.2114 -0.0053 25 6 4.2399 -2.4092 0.0002 26 6 3.5470 -3.6058 0.0006 27 6 2.1641 -3.6077 0.0011 28 6 1.4704 -2.4135 0.0006 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5138 34 1 1.5002 1.8406 -1.9564 35 1 3.0416 0.9508 -1.9563 36 1 3.4280 3.3988 -0.6025 37 1 4.3383 4.9871 -0.4651 38 1 5.5588 7.1186 -0.4750 39 1 6.1664 8.1904 -2.6042 40 1 5.5565 7.1419 -4.7402 41 1 3.1962 3.5952 -8.2886 42 1 4.0943 -0.2771 -0.0098 43 1 5.3199 -2.4112 -0.0002 44 1 4.0869 -4.5411 0.0003 45 1 1.6259 -4.5441 0.0010 46 1 0.3905 -2.4157 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194079539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = -13.038444 kcal Electronic energy + Delta-G solvation = -28244.978038 eV Core-core repulsion = 24292.926215 eV Total energy + Delta-G solvation = -3952.051823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31581 -40.56677 -39.78313 -38.03588 -37.56682 -35.58316 -34.33198 -32.59415 -31.89918 -30.93777 -30.56735 -29.86856 -27.42913 -26.75236 -24.89529 -23.93620 -23.07663 -22.84390 -21.79932 -21.28253 -19.85531 -19.28081 -18.63894 -17.86188 -17.28503 -16.64763 -16.39050 -16.36053 -16.33217 -15.90142 -15.83812 -15.61821 -15.31106 -15.15571 -15.13485 -14.59715 -14.52935 -14.26988 -14.13808 -14.09249 -13.55480 -13.47971 -13.12728 -12.99778 -12.86276 -12.69051 -12.51607 -12.37257 -12.35450 -12.26286 -12.15634 -11.65745 -11.44467 -10.85927 -10.83156 -10.63981 -10.16710 -9.81141 -9.78191 -9.03784 -8.45212 -8.26126 -6.16558 0.12257 0.55582 0.70865 0.73295 1.31109 1.44285 1.49258 1.87096 2.08448 2.15338 2.54865 2.87258 3.01161 3.22467 3.47071 3.82051 3.84620 3.96681 4.02440 4.09668 4.12956 4.29331 4.31874 4.33326 4.43000 4.52337 4.57615 4.63817 4.64428 4.67573 4.75484 4.87957 4.88725 4.94198 4.99773 5.06966 5.14424 5.17539 5.36074 5.47021 5.48479 5.61348 5.62950 5.70241 5.76654 5.95107 5.99097 6.17715 6.30071 6.54271 6.67849 6.93875 7.46844 7.80029 8.75107 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002560 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.484522 B =10933.902057 C =12245.584997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.633 5.633 3 C 0.127 3.873 4 C 0.111 3.889 5 N -0.713 5.713 6 C 0.547 3.453 7 O -0.571 6.571 8 C -0.245 4.245 9 C -0.028 4.028 10 C -0.200 4.200 11 C -0.040 4.040 12 C -0.259 4.259 13 C 0.147 3.853 14 O -0.190 6.190 15 C -0.428 4.428 16 H 0.107 0.893 17 C -0.023 4.023 18 N -0.906 5.906 19 Si 1.022 2.978 20 H -0.253 1.253 21 H -0.274 1.274 22 H -0.253 1.253 23 C 0.198 3.802 24 C -0.214 4.214 25 C -0.085 4.085 26 C -0.190 4.190 27 C -0.081 4.081 28 C -0.208 4.208 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.415 0.585 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.270 0.730 42 H 0.122 0.878 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.142 0.858 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 -4.952 21.946 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.344 5.344 3 C 0.003 3.997 4 C -0.015 4.015 5 N -0.369 5.369 6 C 0.337 3.663 7 O -0.450 6.450 8 C -0.249 4.249 9 C -0.046 4.046 10 C -0.218 4.218 11 C -0.058 4.058 12 C -0.278 4.278 13 C 0.092 3.908 14 O -0.092 6.092 15 C -0.504 4.504 16 H 0.124 0.876 17 C -0.222 4.222 18 N -0.542 5.542 19 Si 0.840 3.160 20 H -0.177 1.177 21 H -0.198 1.198 22 H -0.177 1.177 23 C 0.097 3.903 24 C -0.236 4.236 25 C -0.104 4.104 26 C -0.210 4.210 27 C -0.099 4.099 28 C -0.230 4.230 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.253 0.747 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.159 0.841 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.100 -5.565 20.991 21.817 hybrid contribution 0.134 0.291 -1.216 1.257 sum -1.967 -5.275 19.775 20.561 Atomic orbital electron populations 1.21821 0.78133 1.04244 1.01252 1.46414 1.05740 1.02273 1.79934 1.21533 0.99313 0.86016 0.92839 1.21651 0.95278 0.84796 0.99727 1.45423 1.59466 1.24021 1.08018 1.18591 0.78946 0.85066 0.83669 1.90942 1.55229 1.65679 1.33179 1.19277 1.13475 0.99268 0.92909 1.21330 0.93706 0.94656 0.94933 1.21196 1.04697 0.97108 0.98818 1.21448 0.94445 0.98857 0.91058 1.21301 1.08069 0.97762 1.00644 1.20130 0.91749 0.91976 0.86980 1.84183 1.71147 1.42194 1.11726 1.22006 1.39102 1.06049 0.83261 0.87552 1.26778 0.95408 0.97527 1.02503 1.70328 1.36715 1.20353 1.26812 0.84625 0.79603 0.77619 0.74124 1.17746 1.19849 1.17737 1.18094 0.91521 0.86449 0.94246 1.20919 0.92630 0.99318 1.10774 1.21180 1.00421 0.92141 0.96660 1.21216 0.94745 0.98374 1.06655 1.21223 0.94449 0.97939 0.96298 1.20954 1.00502 0.91128 1.10455 0.94450 0.89850 0.89436 0.88612 0.87136 0.93962 0.94667 0.74663 0.81827 0.81660 0.82860 0.85988 0.92080 0.86026 0.85016 0.84789 0.84062 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 10.23 127.77 1.31 2.68 16 2 N -0.63 -12.84 3.01 -722.18 -2.17 -15.01 16 3 C 0.13 2.38 5.31 86.38 0.46 2.84 16 4 C 0.11 3.31 6.00 86.38 0.52 3.82 16 5 N -0.71 -21.97 5.51 -466.28 -2.57 -24.53 16 6 C 0.55 25.01 7.76 86.69 0.67 25.69 16 7 O -0.57 -34.59 15.17 16.88 0.26 -34.34 16 8 C -0.24 -10.55 5.89 -19.99 -0.12 -10.67 16 9 C -0.03 -0.81 9.53 22.52 0.21 -0.59 16 10 C -0.20 -5.13 10.02 22.25 0.22 -4.91 16 11 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 12 C -0.26 -11.04 9.16 22.36 0.20 -10.84 16 13 C 0.15 7.61 6.66 22.91 0.15 7.76 16 14 O -0.19 -12.25 7.84 0.81 0.01 -12.24 16 15 C -0.43 -26.22 9.49 67.93 0.64 -25.58 16 16 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 17 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 18 N -0.91 -60.22 13.67 21.62 0.30 -59.92 16 19 Si 1.02 44.73 29.55 68.60 2.03 46.75 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 23 C 0.20 4.57 6.55 38.21 0.25 4.82 16 24 C -0.21 -5.06 9.20 22.40 0.21 -4.86 16 25 C -0.09 -1.85 10.04 22.25 0.22 -1.63 16 26 C -0.19 -3.75 10.04 22.29 0.22 -3.53 16 27 C -0.08 -1.53 10.04 22.25 0.22 -1.31 16 28 C -0.21 -4.30 9.21 22.40 0.21 -4.10 16 29 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.08 1.04 6.20 -2.39 -0.01 1.03 16 31 H 0.09 1.01 7.89 -2.39 -0.02 0.99 16 32 H 0.10 1.54 6.21 -2.39 -0.01 1.53 16 33 H 0.11 1.44 7.89 -2.39 -0.02 1.42 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 8.50 6.50 -92.71 -0.60 7.90 16 37 H 0.16 2.96 6.40 -2.91 -0.02 2.94 16 38 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 41 H 0.27 16.49 8.31 -92.70 -0.77 15.72 16 42 H 0.12 2.75 6.15 -2.91 -0.02 2.73 16 43 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 46 H 0.14 2.27 6.14 -2.91 -0.02 2.25 16 Total: -1.00 -92.95 383.99 4.57 -88.39 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.42 Total: 33.23 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 6.30 Total: -22.33 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -4.44 Total: -99.47 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: 0.26 Total: -46.58 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -92.95 4.57 -88.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194079539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.347 kcal (2) G-P(sol) polarization free energy of solvation -92.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds