Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00169 * 2 1 4 4 C 1.53000 * 109.47087 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47193 * 65.00095 * 4 3 2 6 6 C 1.46502 * 120.00049 * 48.45712 * 5 4 3 7 7 C 1.50697 * 109.47222 * 90.00093 * 6 5 4 8 8 C 1.38230 * 119.61649 * 94.99982 * 7 6 5 9 9 C 1.38624 * 119.16147 * 179.97438 * 8 7 6 10 10 C 1.38681 * 118.42141 * 359.97438 * 9 8 7 11 11 C 1.38178 * 119.15906 * 0.02562 * 10 9 8 12 12 N 1.31855 * 119.61890 * 274.72591 * 7 6 5 13 13 C 1.34775 * 119.99746 * 228.46010 * 5 4 3 14 14 O 1.21590 * 119.99897 * 183.27097 * 13 5 4 15 15 C 1.47641 * 120.00193 * 3.27090 * 13 5 4 16 16 C 1.40007 * 119.89499 * 37.31418 * 15 13 5 17 17 C 1.36317 * 120.10410 * 179.76036 * 16 15 13 18 18 C 1.40888 * 119.89370 * 0.51827 * 17 16 15 19 19 C 1.41103 * 120.10347 * 179.71566 * 18 17 16 20 20 H 1.08006 * 120.00052 * 162.43045 * 19 18 17 21 21 C 1.40223 * 120.00273 * 342.43785 * 19 18 17 22 22 N 1.30644 * 120.00003 * 330.87774 * 21 19 18 23 23 Si 1.86801 * 120.00289 * 150.87455 * 21 19 18 24 24 H 1.48506 * 109.46887 * 94.99458 * 23 21 19 25 25 H 1.48499 * 109.47435 * 214.99740 * 23 21 19 26 26 H 1.48504 * 109.47108 * 334.99935 * 23 21 19 27 27 C 1.40885 * 119.79165 * 359.74130 * 18 17 16 28 28 C 1.36316 * 119.89155 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46480 * 60.00169 * 1 2 3 30 30 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46861 * 300.00572 * 1 2 3 32 32 H 1.08998 * 109.47697 * 59.99566 * 3 2 1 33 33 H 1.09006 * 109.47270 * 299.99607 * 3 2 1 34 34 H 1.09001 * 109.47210 * 304.99511 * 4 3 2 35 35 H 1.09007 * 109.46787 * 184.99962 * 4 3 2 36 36 H 1.08998 * 109.47327 * 329.99961 * 6 5 4 37 37 H 1.09006 * 109.47086 * 210.00282 * 6 5 4 38 38 H 1.08002 * 120.41940 * 359.95689 * 8 7 6 39 39 H 1.08000 * 120.79212 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.41920 * 180.02562 * 10 9 8 41 41 H 1.07999 * 119.61509 * 180.02562 * 11 10 9 42 42 H 1.08006 * 119.94902 * 0.02793 * 16 15 13 43 43 H 1.08004 * 120.05509 * 180.23751 * 17 16 15 44 44 H 0.97001 * 119.99749 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.05664 * 179.97438 * 27 18 17 46 46 H 1.08004 * 119.94425 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.4654 1.0558 -2.5326 7 6 4.3689 2.1459 -3.0487 8 6 5.3750 1.8328 -3.9434 9 6 6.2003 2.8430 -4.4126 10 6 5.9814 4.1364 -3.9627 11 6 4.9557 4.3735 -3.0677 12 7 4.1871 3.3882 -2.6459 13 6 4.8530 -0.4598 -1.2230 14 8 5.2649 -0.9359 -2.2633 15 6 5.3127 -1.0031 0.0705 16 6 4.4200 -1.0968 1.1449 17 6 4.8386 -1.6023 2.3397 18 6 6.1749 -2.0205 2.4956 19 6 6.6145 -2.5388 3.7322 20 1 7.5277 -3.1133 3.7830 21 6 5.8658 -2.3082 4.8952 22 7 5.1421 -1.2258 5.0022 23 14 5.9031 -3.5485 6.2915 24 1 6.9215 -3.1378 7.2913 25 1 4.5681 -3.6051 6.9392 26 1 6.2497 -4.8887 5.7539 27 6 7.0709 -1.9192 1.4132 28 6 6.6416 -1.4178 0.2205 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5684 0.8428 35 1 3.9785 2.1765 0.0902 36 1 2.4597 1.4525 -2.3944 37 1 3.4373 0.2366 -3.2511 38 1 5.5165 0.8139 -4.2726 39 1 6.9942 2.6281 -5.1124 40 1 6.6048 4.9481 -4.3075 41 1 4.7784 5.3780 -2.7129 42 1 3.3968 -0.7721 1.0257 43 1 4.1482 -1.6777 3.1669 44 1 4.6239 -1.0665 5.8065 45 1 8.0964 -2.2382 1.5281 46 1 7.3279 -1.3394 -0.6097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270231988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = -5.184867 kcal Electronic energy + Delta-G solvation = -29465.079679 eV Core-core repulsion = 25513.368412 eV Total energy + Delta-G solvation = -3951.711266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33822 -39.29870 -37.66931 -37.07517 -35.11633 -33.94538 -32.49400 -32.05390 -30.15526 -29.59645 -29.25756 -27.15226 -26.17334 -25.34172 -23.45851 -22.73152 -22.38929 -21.11452 -20.85938 -18.83101 -17.53546 -16.86416 -16.83743 -16.54899 -15.94525 -15.69673 -15.63889 -15.43075 -15.19454 -14.72325 -14.29316 -14.10851 -13.82176 -13.35595 -13.28458 -13.21381 -12.91928 -12.71661 -12.51756 -12.16311 -12.00178 -11.88286 -11.66019 -11.62962 -11.53853 -11.20628 -11.14493 -10.98251 -10.73921 -10.45868 -10.09048 -9.85107 -9.58420 -9.49614 -9.41938 -9.15499 -9.07656 -8.71480 -8.21809 -7.57560 -7.55226 -7.08592 -4.51333 1.10549 1.31675 2.37850 2.90661 2.96341 3.04888 3.07662 3.45595 3.74159 3.78165 3.91843 4.03263 4.33792 4.48370 4.78615 4.83765 5.09036 5.14219 5.18254 5.28629 5.34429 5.41330 5.43865 5.56897 5.59394 5.61779 5.71712 5.81875 5.86985 5.91784 6.01762 6.18925 6.23869 6.29533 6.30925 6.35741 6.73024 6.80891 6.88235 6.96414 7.13372 7.20230 7.30996 7.49497 7.68795 7.87742 7.93140 8.01848 8.09627 8.15594 8.44468 8.68395 8.82738 9.04539 9.82602 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.003221 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.580135 B = 8689.814728 C = 9769.643287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.046 3.954 4 C 0.079 3.921 5 N -0.601 5.601 6 C 0.167 3.833 7 C 0.115 3.885 8 C -0.145 4.145 9 C -0.080 4.080 10 C -0.178 4.178 11 C 0.092 3.908 12 N -0.476 5.476 13 C 0.583 3.417 14 O -0.568 6.568 15 C -0.287 4.287 16 C -0.070 4.070 17 C -0.189 4.189 18 C 0.126 3.874 19 C -0.445 4.445 20 H 0.085 0.915 21 C 0.083 3.917 22 N -0.756 5.756 23 Si 0.904 3.096 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.256 1.256 27 C -0.244 4.244 28 C -0.024 4.024 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.287 0.713 45 H 0.095 0.905 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 9.198 -8.891 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.031 4.031 4 C -0.043 4.043 5 N -0.333 5.333 6 C 0.042 3.958 7 C -0.024 4.024 8 C -0.165 4.165 9 C -0.106 4.106 10 C -0.198 4.198 11 C -0.065 4.065 12 N -0.185 5.185 13 C 0.378 3.622 14 O -0.449 6.449 15 C -0.292 4.292 16 C -0.089 4.089 17 C -0.208 4.208 18 C 0.123 3.877 19 C -0.472 4.472 20 H 0.103 0.897 21 C -0.141 4.141 22 N -0.377 5.377 23 Si 0.727 3.273 24 H -0.192 1.192 25 H -0.196 1.196 26 H -0.179 1.179 27 C -0.263 4.263 28 C -0.043 4.043 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.170 0.830 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.668 9.102 -8.677 14.234 hybrid contribution 0.490 -0.092 0.102 0.509 sum -6.178 9.010 -8.575 13.888 Atomic orbital electron populations 1.22704 0.81740 1.02541 0.99454 1.88001 1.19004 1.27478 1.95253 1.22950 0.94596 0.85133 1.00413 1.22494 0.91642 1.00438 0.89728 1.47599 1.46404 1.34332 1.04964 1.20129 0.95187 0.93396 0.87042 1.21815 0.95456 0.92201 0.92931 1.22160 0.95517 1.00942 0.97925 1.21605 0.98090 0.92791 0.98155 1.22100 0.99991 0.97710 0.99983 1.22690 0.91566 0.98186 0.94077 1.67486 1.27499 1.00100 1.23460 1.18724 0.76202 0.77369 0.89896 1.90605 1.57861 1.61026 1.35428 1.18766 0.96612 1.20280 0.93496 1.20795 0.97881 0.97519 0.92683 1.20922 0.96290 1.06937 0.96689 1.17710 0.91158 0.86736 0.92135 1.19803 1.07777 1.28065 0.91523 0.89697 1.26104 0.93096 0.94607 1.00310 1.69810 1.19270 1.20886 1.27767 0.86356 0.78864 0.82128 0.79930 1.19245 1.19641 1.17910 1.20572 0.98541 1.12423 0.94796 1.20216 0.93515 0.94674 0.95877 0.94569 0.89839 0.94288 0.92377 0.92932 0.84447 0.90936 0.89481 0.88721 0.84153 0.85047 0.85152 0.83043 0.86454 0.86611 0.90159 0.88669 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.81 9.45 -35.23 -0.33 -6.14 16 3 C 0.05 0.64 5.78 37.16 0.21 0.86 16 4 C 0.08 1.32 5.65 -4.04 -0.02 1.29 16 5 N -0.60 -10.84 2.64 -176.24 -0.46 -11.30 16 6 C 0.17 2.58 5.54 -5.19 -0.03 2.55 16 7 C 0.11 1.74 6.36 -82.59 -0.53 1.22 16 8 C -0.15 -2.09 9.72 -39.44 -0.38 -2.47 16 9 C -0.08 -0.96 10.18 -39.28 -0.40 -1.36 16 10 C -0.18 -1.92 10.11 -39.44 -0.40 -2.32 16 11 C 0.09 1.10 11.18 -17.55 -0.20 0.90 16 12 N -0.48 -6.87 10.27 -9.47 -0.10 -6.97 16 13 C 0.58 12.69 7.33 -12.42 -0.09 12.60 16 14 O -0.57 -13.28 16.29 5.29 0.09 -13.20 16 15 C -0.29 -6.72 5.43 -104.73 -0.57 -7.29 16 16 C -0.07 -1.62 7.34 -39.61 -0.29 -1.91 16 17 C -0.19 -4.71 8.73 -39.27 -0.34 -5.05 16 18 C 0.13 3.24 5.62 -106.81 -0.60 2.64 16 19 C -0.45 -11.16 8.99 -37.75 -0.34 -11.50 16 20 H 0.08 2.05 7.99 -52.48 -0.42 1.63 16 21 C 0.08 1.92 4.93 -17.31 -0.09 1.83 16 22 N -0.76 -17.88 11.23 55.56 0.62 -17.25 16 23 Si 0.90 17.21 29.65 -169.99 -5.04 12.17 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 27 C -0.24 -5.99 9.73 -39.27 -0.38 -6.37 16 28 C -0.02 -0.57 9.55 -39.61 -0.38 -0.94 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.67 6.16 -51.93 -0.32 0.35 16 34 H 0.14 2.62 3.15 -53.46 -0.17 2.45 16 35 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.09 1.20 5.81 -51.93 -0.30 0.90 16 37 H 0.09 1.50 7.37 -51.93 -0.38 1.11 16 38 H 0.14 2.09 7.87 -52.49 -0.41 1.68 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.12 2.50 4.67 -52.48 -0.24 2.25 16 43 H 0.12 2.91 6.08 -52.48 -0.32 2.60 16 44 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 45 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 46 H 0.09 2.11 8.03 -52.48 -0.42 1.69 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -29.57 382.39 -9.10 -38.67 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.93 Total: 12.11 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.71 Total: -13.84 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.06 Total: -35.53 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.25 Total: -19.34 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.04 Total: 12.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.57 -9.10 -38.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270231988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.481 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds