Wall clock time and date at job start Sat Apr 11 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00169 * 2 1 4 4 C 1.53000 * 109.47087 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47193 * 65.00095 * 4 3 2 6 6 C 1.46502 * 120.00049 * 48.45712 * 5 4 3 7 7 C 1.50697 * 109.47222 * 90.00093 * 6 5 4 8 8 C 1.38230 * 119.61649 * 94.99982 * 7 6 5 9 9 C 1.38624 * 119.16147 * 179.97438 * 8 7 6 10 10 C 1.38681 * 118.42141 * 359.97438 * 9 8 7 11 11 C 1.38178 * 119.15906 * 0.02562 * 10 9 8 12 12 N 1.31855 * 119.61890 * 274.72591 * 7 6 5 13 13 C 1.34775 * 119.99746 * 228.46010 * 5 4 3 14 14 O 1.21590 * 119.99897 * 183.27097 * 13 5 4 15 15 C 1.47641 * 120.00193 * 3.27090 * 13 5 4 16 16 C 1.40007 * 119.89499 * 37.31418 * 15 13 5 17 17 C 1.36317 * 120.10410 * 179.76036 * 16 15 13 18 18 C 1.40888 * 119.89370 * 0.51827 * 17 16 15 19 19 C 1.41103 * 120.10347 * 179.71566 * 18 17 16 20 20 H 1.08006 * 120.00052 * 162.43045 * 19 18 17 21 21 C 1.40223 * 120.00273 * 342.43785 * 19 18 17 22 22 N 1.30644 * 120.00003 * 330.87774 * 21 19 18 23 23 Si 1.86801 * 120.00289 * 150.87455 * 21 19 18 24 24 H 1.48506 * 109.46887 * 94.99458 * 23 21 19 25 25 H 1.48499 * 109.47435 * 214.99740 * 23 21 19 26 26 H 1.48504 * 109.47108 * 334.99935 * 23 21 19 27 27 C 1.40885 * 119.79165 * 359.74130 * 18 17 16 28 28 C 1.36316 * 119.89155 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46480 * 60.00169 * 1 2 3 30 30 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46861 * 300.00572 * 1 2 3 32 32 H 1.08998 * 109.47697 * 59.99566 * 3 2 1 33 33 H 1.09006 * 109.47270 * 299.99607 * 3 2 1 34 34 H 1.09001 * 109.47210 * 304.99511 * 4 3 2 35 35 H 1.09007 * 109.46787 * 184.99962 * 4 3 2 36 36 H 1.08998 * 109.47327 * 329.99961 * 6 5 4 37 37 H 1.09006 * 109.47086 * 210.00282 * 6 5 4 38 38 H 1.08002 * 120.41940 * 359.95689 * 8 7 6 39 39 H 1.08000 * 120.79212 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.41920 * 180.02562 * 10 9 8 41 41 H 1.07999 * 119.61509 * 180.02562 * 11 10 9 42 42 H 1.08006 * 119.94902 * 0.02793 * 16 15 13 43 43 H 1.08004 * 120.05509 * 180.23751 * 17 16 15 44 44 H 0.97001 * 119.99749 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.05664 * 179.97438 * 27 18 17 46 46 H 1.08004 * 119.94425 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.4654 1.0558 -2.5326 7 6 4.3689 2.1459 -3.0487 8 6 5.3750 1.8328 -3.9434 9 6 6.2003 2.8430 -4.4126 10 6 5.9814 4.1364 -3.9627 11 6 4.9557 4.3735 -3.0677 12 7 4.1871 3.3882 -2.6459 13 6 4.8530 -0.4598 -1.2230 14 8 5.2649 -0.9359 -2.2633 15 6 5.3127 -1.0031 0.0705 16 6 4.4200 -1.0968 1.1449 17 6 4.8386 -1.6023 2.3397 18 6 6.1749 -2.0205 2.4956 19 6 6.6145 -2.5388 3.7322 20 1 7.5277 -3.1133 3.7830 21 6 5.8658 -2.3082 4.8952 22 7 5.1421 -1.2258 5.0022 23 14 5.9031 -3.5485 6.2915 24 1 6.9215 -3.1378 7.2913 25 1 4.5681 -3.6051 6.9392 26 1 6.2497 -4.8887 5.7539 27 6 7.0709 -1.9192 1.4132 28 6 6.6416 -1.4178 0.2205 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5684 0.8428 35 1 3.9785 2.1765 0.0902 36 1 2.4597 1.4525 -2.3944 37 1 3.4373 0.2366 -3.2511 38 1 5.5165 0.8139 -4.2726 39 1 6.9942 2.6281 -5.1124 40 1 6.6048 4.9481 -4.3075 41 1 4.7784 5.3780 -2.7129 42 1 3.3968 -0.7721 1.0257 43 1 4.1482 -1.6777 3.1669 44 1 4.6239 -1.0665 5.8065 45 1 8.0964 -2.2382 1.5281 46 1 7.3279 -1.3394 -0.6097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270231988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:16 Heat of formation + Delta-G solvation = -21.112291 kcal Electronic energy + Delta-G solvation = -29465.770344 eV Core-core repulsion = 25513.368412 eV Total energy + Delta-G solvation = -3952.401931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56781 -40.67203 -38.99207 -38.75367 -36.56413 -35.74216 -33.56400 -33.18155 -31.84756 -31.37193 -30.59199 -28.57914 -27.25263 -26.87920 -24.43145 -24.08373 -23.74837 -22.80422 -22.48263 -20.38476 -19.37988 -18.31780 -17.89178 -17.81595 -17.14365 -17.07820 -16.93686 -16.70348 -16.40929 -15.90637 -15.86511 -15.50622 -15.35042 -14.84860 -14.63717 -14.36087 -14.27492 -14.18612 -13.95659 -13.78179 -13.49005 -13.19181 -13.01778 -12.94538 -12.78335 -12.64830 -12.61209 -12.52997 -12.25865 -11.93089 -11.81891 -11.28648 -10.93194 -10.82561 -10.66167 -10.54885 -10.47149 -9.95633 -9.70275 -9.45942 -9.38685 -8.85751 -6.41441 0.10911 0.35196 0.57825 1.16141 1.36849 1.43305 1.55665 2.01611 2.13528 2.17936 2.67592 2.87844 2.94500 3.33156 3.67492 3.71132 3.97217 4.02747 4.04971 4.12697 4.22320 4.27495 4.37425 4.42038 4.45562 4.53193 4.56758 4.60101 4.61277 4.67507 4.76454 4.85722 4.88734 4.96082 4.97970 5.03813 5.19648 5.22435 5.28083 5.33000 5.57780 5.62066 5.78652 5.85138 5.98769 6.04944 6.23306 6.29461 6.49458 6.55836 6.79025 6.93033 7.02456 7.36965 8.09514 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.003221 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.580135 B = 8689.814728 C = 9769.643287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.054 3.946 4 C 0.079 3.921 5 N -0.591 5.591 6 C 0.169 3.831 7 C 0.094 3.906 8 C -0.167 4.167 9 C -0.084 4.084 10 C -0.166 4.166 11 C 0.084 3.916 12 N -0.492 5.492 13 C 0.579 3.421 14 O -0.592 6.592 15 C -0.299 4.299 16 C -0.057 4.057 17 C -0.209 4.209 18 C 0.100 3.900 19 C -0.475 4.475 20 H 0.085 0.915 21 C 0.047 3.953 22 N -0.778 5.778 23 Si 0.979 3.021 24 H -0.257 1.257 25 H -0.260 1.260 26 H -0.260 1.260 27 C -0.260 4.260 28 C -0.032 4.032 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.300 0.700 45 H 0.102 0.898 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 10.951 -8.660 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.023 4.023 4 C -0.043 4.043 5 N -0.322 5.322 6 C 0.046 3.954 7 C -0.044 4.044 8 C -0.187 4.187 9 C -0.110 4.110 10 C -0.186 4.186 11 C -0.074 4.074 12 N -0.202 5.202 13 C 0.373 3.627 14 O -0.475 6.475 15 C -0.303 4.303 16 C -0.075 4.075 17 C -0.228 4.228 18 C 0.097 3.903 19 C -0.501 4.501 20 H 0.103 0.897 21 C -0.175 4.175 22 N -0.400 5.400 23 Si 0.799 3.201 24 H -0.182 1.182 25 H -0.184 1.184 26 H -0.183 1.183 27 C -0.279 4.279 28 C -0.051 4.051 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.200 0.800 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.527 10.892 -8.454 15.708 hybrid contribution 0.740 -0.477 -0.040 0.881 sum -6.786 10.415 -8.494 15.056 Atomic orbital electron populations 1.22885 0.79667 1.03373 1.00927 1.87943 1.21349 1.28291 1.95549 1.22885 0.92221 0.85083 1.02094 1.22475 0.94054 0.99742 0.88032 1.47527 1.44975 1.33048 1.06617 1.20208 0.96264 0.93543 0.85418 1.21631 0.96115 0.92552 0.94146 1.22174 0.96572 1.01067 0.98903 1.21958 0.98002 0.92802 0.98191 1.22523 0.99453 0.98107 0.98498 1.23322 0.91276 0.98881 0.93878 1.67458 1.28560 1.00097 1.24088 1.18520 0.77018 0.78301 0.88852 1.90582 1.59039 1.62162 1.35748 1.19044 0.96535 1.20205 0.94535 1.20924 0.98579 0.96108 0.91915 1.20916 0.96104 1.08554 0.97247 1.18030 0.91803 0.87473 0.92957 1.20070 1.08750 1.28925 0.92369 0.89731 1.26916 0.92205 0.96086 1.02300 1.69803 1.19169 1.21982 1.29066 0.85235 0.79487 0.78876 0.76529 1.18163 1.18394 1.18343 1.20708 0.98923 1.13244 0.95050 1.20366 0.94157 0.94739 0.95856 0.92897 0.89462 0.92927 0.90390 0.91354 0.87046 0.90355 0.87612 0.89697 0.85755 0.82616 0.81392 0.79951 0.84835 0.87313 0.88883 0.88030 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -12.18 9.45 -148.98 -1.41 -13.59 16 3 C 0.05 1.41 5.78 71.98 0.42 1.83 16 4 C 0.08 2.60 5.65 86.38 0.49 3.08 16 5 N -0.59 -21.47 2.64 -829.78 -2.19 -23.66 16 6 C 0.17 5.23 5.54 85.63 0.47 5.70 16 7 C 0.09 2.80 6.36 42.55 0.27 3.07 16 8 C -0.17 -4.80 9.72 22.36 0.22 -4.58 16 9 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 10 C -0.17 -3.05 10.11 22.36 0.23 -2.83 16 11 C 0.08 1.76 11.18 84.67 0.95 2.71 16 12 N -0.49 -13.43 10.27 -183.89 -1.89 -15.32 16 13 C 0.58 25.88 7.33 86.73 0.64 26.52 16 14 O -0.59 -28.59 16.29 -4.00 -0.07 -28.66 16 15 C -0.30 -14.44 5.43 -19.94 -0.11 -14.55 16 16 C -0.06 -2.70 7.34 22.25 0.16 -2.54 16 17 C -0.21 -10.75 8.73 22.47 0.20 -10.55 16 18 C 0.10 5.36 5.62 -21.28 -0.12 5.24 16 19 C -0.48 -24.43 8.99 23.46 0.21 -24.21 16 20 H 0.08 4.19 7.99 -2.91 -0.02 4.17 16 21 C 0.05 2.19 4.93 85.35 0.42 2.61 16 22 N -0.78 -36.96 11.23 21.87 0.25 -36.71 16 23 Si 0.98 34.85 29.65 68.60 2.03 36.88 16 24 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 25 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 26 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 27 C -0.26 -13.30 9.73 22.47 0.22 -13.08 16 28 C -0.03 -1.59 9.55 22.25 0.21 -1.38 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.57 6.16 -2.38 -0.01 1.56 16 34 H 0.11 4.31 3.15 -3.82 -0.01 4.29 16 35 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.11 2.81 5.81 -2.39 -0.01 2.79 16 37 H 0.08 2.77 7.37 -2.38 -0.02 2.75 16 38 H 0.12 3.88 7.87 -2.91 -0.02 3.86 16 39 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.13 5.79 4.67 -2.91 -0.01 5.78 16 43 H 0.11 5.65 6.08 -2.91 -0.02 5.63 16 44 H 0.30 12.49 8.29 -92.71 -0.77 11.72 16 45 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 46 H 0.10 4.62 8.03 -2.91 -0.02 4.60 16 Total: -1.00 -65.96 382.39 4.08 -61.88 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: 1.00 Total: 41.92 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 6.35 Total: -22.75 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -3.83 Total: -75.69 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.47 Total: -42.24 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Total: -65.96 4.08 -61.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270231988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.769 kcal (2) G-P(sol) polarization free energy of solvation -65.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds