Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 C 1.53000 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47105 * 65.00092 * 4 3 2 6 6 C 1.46498 * 120.00126 * 48.49496 * 5 4 3 7 7 C 1.50694 * 109.47071 * 89.99997 * 6 5 4 8 8 C 1.38678 * 120.41901 * 90.00286 * 7 6 5 9 9 C 1.38628 * 118.42356 * 179.97438 * 8 7 6 10 10 C 1.38229 * 119.15825 * 0.24882 * 9 8 7 11 11 N 1.31858 * 120.76183 * 359.50266 * 10 9 8 12 12 C 1.31878 * 121.72919 * 0.48926 * 11 10 9 13 13 C 1.34777 * 119.99720 * 228.49472 * 5 4 3 14 14 O 1.21586 * 120.00091 * 183.26298 * 13 5 4 15 15 C 1.47644 * 119.99897 * 3.26375 * 13 5 4 16 16 C 1.40008 * 119.89573 * 37.30580 * 15 13 5 17 17 C 1.36324 * 120.10407 * 179.76018 * 16 15 13 18 18 C 1.40889 * 119.89190 * 0.51113 * 17 16 15 19 19 C 1.41109 * 120.10449 * 179.71351 * 18 17 16 20 20 H 1.07999 * 119.99504 * 162.43645 * 19 18 17 21 21 C 1.40230 * 119.99930 * 342.44590 * 19 18 17 22 22 N 1.30645 * 119.99616 * 330.86703 * 21 19 18 23 23 Si 1.86793 * 119.99816 * 150.87510 * 21 19 18 24 24 H 1.48503 * 109.47002 * 94.99507 * 23 21 19 25 25 H 1.48508 * 109.46918 * 214.99036 * 23 21 19 26 26 H 1.48493 * 109.47540 * 334.99009 * 23 21 19 27 27 C 1.40888 * 119.79379 * 359.74717 * 18 17 16 28 28 C 1.36323 * 119.89057 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47207 * 299.99984 * 1 2 3 31 31 H 1.09002 * 109.47651 * 59.99902 * 1 2 3 32 32 H 1.08997 * 109.46996 * 60.00018 * 3 2 1 33 33 H 1.09001 * 109.46784 * 300.00339 * 3 2 1 34 34 H 1.08993 * 109.47000 * 304.99863 * 4 3 2 35 35 H 1.09002 * 109.46849 * 184.99883 * 4 3 2 36 36 H 1.08997 * 109.47408 * 329.99778 * 6 5 4 37 37 H 1.09003 * 109.46954 * 210.00152 * 6 5 4 38 38 H 1.07996 * 120.78839 * 359.95034 * 8 7 6 39 39 H 1.07996 * 120.42147 * 179.97438 * 9 8 7 40 40 H 1.08004 * 119.61966 * 179.74457 * 10 9 8 41 41 H 1.07994 * 119.62311 * 179.75943 * 12 11 10 42 42 H 1.07996 * 119.95065 * 0.02562 * 16 15 13 43 43 H 1.08001 * 120.05320 * 180.23341 * 17 16 15 44 44 H 0.97005 * 119.99690 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.05781 * 179.97438 * 27 18 17 46 46 H 1.08001 * 119.94258 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 3.4639 1.0574 -2.5339 7 6 4.3676 2.1474 -3.0499 8 6 5.4448 1.8383 -3.8668 9 6 6.2489 2.8733 -4.3183 10 6 5.9553 4.1694 -3.9378 11 7 4.9196 4.4267 -3.1634 12 6 4.1331 3.4675 -2.7156 13 6 4.8514 -0.4596 -1.2260 14 8 5.2624 -0.9354 -2.2667 15 6 5.3117 -1.0036 0.0671 16 6 4.4197 -1.0972 1.1421 17 6 4.8389 -1.6034 2.3364 18 6 6.1750 -2.0227 2.4912 19 6 6.6153 -2.5417 3.7273 20 1 7.5281 -3.1167 3.7770 21 6 5.8675 -2.3110 4.8909 22 7 5.1446 -1.2281 4.9988 23 14 5.9052 -3.5518 6.2866 24 1 6.9244 -3.1420 7.2859 25 1 4.5705 -3.6077 6.9354 26 1 6.2504 -4.8920 5.7484 27 6 7.0704 -1.9215 1.4081 28 6 6.6405 -1.4192 0.2159 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 2.4584 1.4546 -2.3950 37 1 3.4350 0.2386 -3.2528 38 1 5.6526 0.8154 -4.1442 39 1 7.0965 2.6692 -4.9557 40 1 6.5793 4.9810 -4.2819 41 1 3.2963 3.7164 -2.0800 42 1 3.3967 -0.7719 1.0237 43 1 4.1490 -1.6787 3.1640 44 1 4.6276 -1.0683 5.8039 45 1 8.0956 -2.2412 1.5221 46 1 7.3262 -1.3409 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270266601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = -6.588981 kcal Electronic energy + Delta-G solvation = -29468.743800 eV Core-core repulsion = 25516.971647 eV Total energy + Delta-G solvation = -3951.772153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37200 -39.36246 -37.76246 -37.12889 -35.27306 -33.99831 -32.80921 -31.75017 -30.16926 -29.66443 -29.33556 -27.02851 -26.26071 -25.33330 -23.51771 -22.83096 -22.42004 -21.13441 -20.88973 -18.86679 -17.56844 -17.10600 -16.89531 -16.65170 -16.01269 -15.80595 -15.67832 -15.48519 -15.18637 -14.69208 -14.30517 -14.10545 -13.84082 -13.48897 -13.36767 -13.04756 -12.96807 -12.88854 -12.57534 -12.26019 -12.08542 -11.94372 -11.89815 -11.64131 -11.51044 -11.23481 -11.18381 -11.01020 -10.79733 -10.51870 -10.12528 -9.79047 -9.65623 -9.50383 -9.47497 -9.20125 -9.10698 -8.75171 -8.27764 -7.61326 -7.58685 -7.11661 -4.54302 1.07527 1.33093 2.34437 2.88545 2.94450 3.02855 3.04310 3.45142 3.71636 3.75334 3.81695 3.96103 4.40534 4.44549 4.78361 4.83587 5.01641 5.03915 5.09148 5.16643 5.23303 5.32226 5.36023 5.44704 5.56301 5.61771 5.64638 5.69861 5.76489 5.79255 5.99117 6.19382 6.21124 6.24853 6.30715 6.38858 6.70572 6.77955 6.85009 6.91121 7.09617 7.16747 7.21120 7.46137 7.64691 7.84180 7.89612 7.94689 8.05280 8.10756 8.41270 8.65366 8.79480 9.00289 9.79595 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.003215 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.912781 B = 8707.904218 C = 9796.148501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.045 3.955 4 C 0.073 3.927 5 N -0.604 5.604 6 C 0.159 3.841 7 C -0.148 4.148 8 C -0.050 4.050 9 C -0.176 4.176 10 C 0.092 3.908 11 N -0.490 5.490 12 C 0.105 3.895 13 C 0.584 3.416 14 O -0.568 6.568 15 C -0.289 4.289 16 C -0.071 4.071 17 C -0.189 4.189 18 C 0.126 3.874 19 C -0.444 4.444 20 H 0.085 0.915 21 C 0.082 3.918 22 N -0.755 5.755 23 Si 0.905 3.095 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.256 1.256 27 C -0.244 4.244 28 C -0.023 4.023 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.287 0.713 45 H 0.095 0.905 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 7.671 -8.081 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.033 4.033 4 C -0.049 4.049 5 N -0.337 5.337 6 C 0.035 3.965 7 C -0.152 4.152 8 C -0.077 4.077 9 C -0.196 4.196 10 C -0.065 4.065 11 N -0.198 5.198 12 C -0.052 4.052 13 C 0.379 3.621 14 O -0.449 6.449 15 C -0.293 4.293 16 C -0.090 4.090 17 C -0.208 4.208 18 C 0.122 3.878 19 C -0.471 4.471 20 H 0.103 0.897 21 C -0.141 4.141 22 N -0.377 5.377 23 Si 0.728 3.272 24 H -0.192 1.192 25 H -0.196 1.196 26 H -0.179 1.179 27 C -0.263 4.263 28 C -0.043 4.043 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.151 8.268 -8.222 13.678 hybrid contribution -0.082 -0.913 0.501 1.045 sum -7.233 7.354 -7.721 12.885 Atomic orbital electron populations 1.22720 0.81609 1.02686 0.99485 1.88017 1.19092 1.27187 1.95224 1.22977 0.94624 0.85441 1.00241 1.22538 0.91582 1.00517 0.90304 1.47673 1.46517 1.34564 1.04905 1.20126 0.94715 0.94739 0.86880 1.21401 0.98656 0.96410 0.98714 1.21723 0.92269 1.00318 0.93352 1.22170 1.01130 0.94066 1.02191 1.22710 0.93990 0.95806 0.94005 1.67654 1.04860 1.36928 1.10360 1.22583 0.97713 0.88255 0.96647 1.18700 0.76191 0.77309 0.89858 1.90602 1.57860 1.61009 1.35415 1.18766 0.96634 1.20381 0.93510 1.20779 0.97813 0.97670 0.92701 1.20924 0.96295 1.06908 0.96695 1.17713 0.91157 0.86743 0.92143 1.19815 1.07793 1.27963 0.91519 0.89668 1.26109 0.93069 0.94625 1.00331 1.69809 1.19278 1.20867 1.27750 0.86347 0.78886 0.82107 0.79906 1.19216 1.19631 1.17900 1.20580 0.98565 1.12362 0.94796 1.20220 0.93521 0.94637 0.95879 0.89750 0.94215 0.94520 0.92165 0.93347 0.84121 0.91094 0.90065 0.89195 0.84114 0.84962 0.83072 0.83334 0.86511 0.86612 0.90140 0.88649 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.39 9.45 -35.23 -0.33 -5.72 16 3 C 0.04 0.55 5.79 37.16 0.22 0.76 16 4 C 0.07 1.10 5.65 -4.04 -0.02 1.08 16 5 N -0.60 -10.17 2.64 -176.25 -0.46 -10.64 16 6 C 0.16 2.23 5.38 -5.20 -0.03 2.20 16 7 C -0.15 -2.04 5.48 -104.48 -0.57 -2.62 16 8 C -0.05 -0.70 9.81 -39.27 -0.39 -1.09 16 9 C -0.18 -2.11 10.11 -39.44 -0.40 -2.51 16 10 C 0.09 1.11 11.18 -17.54 -0.20 0.91 16 11 N -0.49 -6.70 10.36 -13.25 -0.14 -6.84 16 12 C 0.11 1.37 10.86 -17.55 -0.19 1.18 16 13 C 0.58 12.31 7.33 -12.42 -0.09 12.21 16 14 O -0.57 -12.99 15.91 5.29 0.08 -12.91 16 15 C -0.29 -6.60 5.43 -104.73 -0.57 -7.17 16 16 C -0.07 -1.60 7.34 -39.61 -0.29 -1.89 16 17 C -0.19 -4.62 8.73 -39.27 -0.34 -4.97 16 18 C 0.13 3.19 5.62 -106.80 -0.60 2.59 16 19 C -0.44 -11.02 8.99 -37.75 -0.34 -11.36 16 20 H 0.09 2.03 7.99 -52.49 -0.42 1.61 16 21 C 0.08 1.90 4.93 -17.31 -0.09 1.81 16 22 N -0.76 -17.64 11.23 55.56 0.62 -17.02 16 23 Si 0.90 17.03 29.65 -169.99 -5.04 11.99 16 24 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 27 C -0.24 -5.91 9.73 -39.27 -0.38 -6.29 16 28 C -0.02 -0.55 9.55 -39.61 -0.38 -0.93 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.49 6.16 -51.93 -0.32 0.17 16 34 H 0.14 2.53 3.15 -53.48 -0.17 2.36 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.92 5.76 -51.93 -0.30 0.63 16 37 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 38 H 0.14 2.09 7.54 -52.49 -0.40 1.69 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.12 2.40 4.66 -52.49 -0.24 2.16 16 43 H 0.12 2.87 6.08 -52.49 -0.32 2.55 16 44 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.09 2.08 8.03 -52.49 -0.42 1.66 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -29.47 381.49 -8.97 -38.45 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.91 Total: 11.57 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.55 Total: -14.63 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.02 Total: -34.49 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.25 Total: -18.63 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.04 Total: 11.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.47 -8.97 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270266601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.859 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds