Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 C 1.53000 * 109.47386 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47105 * 65.00092 * 4 3 2 6 6 C 1.46498 * 120.00126 * 48.49496 * 5 4 3 7 7 C 1.50694 * 109.47071 * 89.99997 * 6 5 4 8 8 C 1.38678 * 120.41901 * 90.00286 * 7 6 5 9 9 C 1.38628 * 118.42356 * 179.97438 * 8 7 6 10 10 C 1.38229 * 119.15825 * 0.24882 * 9 8 7 11 11 N 1.31858 * 120.76183 * 359.50266 * 10 9 8 12 12 C 1.31878 * 121.72919 * 0.48926 * 11 10 9 13 13 C 1.34777 * 119.99720 * 228.49472 * 5 4 3 14 14 O 1.21586 * 120.00091 * 183.26298 * 13 5 4 15 15 C 1.47644 * 119.99897 * 3.26375 * 13 5 4 16 16 C 1.40008 * 119.89573 * 37.30580 * 15 13 5 17 17 C 1.36324 * 120.10407 * 179.76018 * 16 15 13 18 18 C 1.40889 * 119.89190 * 0.51113 * 17 16 15 19 19 C 1.41109 * 120.10449 * 179.71351 * 18 17 16 20 20 H 1.07999 * 119.99504 * 162.43645 * 19 18 17 21 21 C 1.40230 * 119.99930 * 342.44590 * 19 18 17 22 22 N 1.30645 * 119.99616 * 330.86703 * 21 19 18 23 23 Si 1.86793 * 119.99816 * 150.87510 * 21 19 18 24 24 H 1.48503 * 109.47002 * 94.99507 * 23 21 19 25 25 H 1.48508 * 109.46918 * 214.99036 * 23 21 19 26 26 H 1.48493 * 109.47540 * 334.99009 * 23 21 19 27 27 C 1.40888 * 119.79379 * 359.74717 * 18 17 16 28 28 C 1.36323 * 119.89057 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47207 * 299.99984 * 1 2 3 31 31 H 1.09002 * 109.47651 * 59.99902 * 1 2 3 32 32 H 1.08997 * 109.46996 * 60.00018 * 3 2 1 33 33 H 1.09001 * 109.46784 * 300.00339 * 3 2 1 34 34 H 1.08993 * 109.47000 * 304.99863 * 4 3 2 35 35 H 1.09002 * 109.46849 * 184.99883 * 4 3 2 36 36 H 1.08997 * 109.47408 * 329.99778 * 6 5 4 37 37 H 1.09003 * 109.46954 * 210.00152 * 6 5 4 38 38 H 1.07996 * 120.78839 * 359.95034 * 8 7 6 39 39 H 1.07996 * 120.42147 * 179.97438 * 9 8 7 40 40 H 1.08004 * 119.61966 * 179.74457 * 10 9 8 41 41 H 1.07994 * 119.62311 * 179.75943 * 12 11 10 42 42 H 1.07996 * 119.95065 * 0.02562 * 16 15 13 43 43 H 1.08001 * 120.05320 * 180.23341 * 17 16 15 44 44 H 0.97005 * 119.99690 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.05781 * 179.97438 * 27 18 17 46 46 H 1.08001 * 119.94258 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 3.4639 1.0574 -2.5339 7 6 4.3676 2.1474 -3.0499 8 6 5.4448 1.8383 -3.8668 9 6 6.2489 2.8733 -4.3183 10 6 5.9553 4.1694 -3.9378 11 7 4.9196 4.4267 -3.1634 12 6 4.1331 3.4675 -2.7156 13 6 4.8514 -0.4596 -1.2260 14 8 5.2624 -0.9354 -2.2667 15 6 5.3117 -1.0036 0.0671 16 6 4.4197 -1.0972 1.1421 17 6 4.8389 -1.6034 2.3364 18 6 6.1750 -2.0227 2.4912 19 6 6.6153 -2.5417 3.7273 20 1 7.5281 -3.1167 3.7770 21 6 5.8675 -2.3110 4.8909 22 7 5.1446 -1.2281 4.9988 23 14 5.9052 -3.5518 6.2866 24 1 6.9244 -3.1420 7.2859 25 1 4.5705 -3.6077 6.9354 26 1 6.2504 -4.8920 5.7484 27 6 7.0704 -1.9215 1.4081 28 6 6.6405 -1.4192 0.2159 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 2.4584 1.4546 -2.3950 37 1 3.4350 0.2386 -3.2528 38 1 5.6526 0.8154 -4.1442 39 1 7.0965 2.6692 -4.9557 40 1 6.5793 4.9810 -4.2819 41 1 3.2963 3.7164 -2.0800 42 1 3.3967 -0.7719 1.0237 43 1 4.1490 -1.6787 3.1640 44 1 4.6276 -1.0683 5.8039 45 1 8.0956 -2.2412 1.5221 46 1 7.3262 -1.3409 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270266601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = -22.414061 kcal Electronic energy + Delta-G solvation = -29469.430027 eV Core-core repulsion = 25516.971647 eV Total energy + Delta-G solvation = -3952.458380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56833 -40.68433 -38.99860 -38.74425 -36.63585 -35.75521 -33.95423 -32.80990 -31.83423 -31.36989 -30.60823 -28.43547 -27.22231 -26.80497 -24.51174 -24.07786 -23.75731 -22.80976 -22.44507 -20.34774 -19.38096 -18.34316 -18.02784 -17.83436 -17.15286 -17.04482 -16.99904 -16.83331 -16.37288 -15.86590 -15.72140 -15.44327 -15.29832 -14.81585 -14.67502 -14.43641 -14.32300 -14.15941 -13.95297 -13.77770 -13.52245 -13.19254 -13.12442 -12.97578 -12.85237 -12.66683 -12.53019 -12.47763 -12.25058 -11.92124 -11.81891 -11.28580 -10.94046 -10.86463 -10.57271 -10.52416 -10.48076 -9.97123 -9.68535 -9.45804 -9.38058 -8.86049 -6.41600 0.09423 0.31129 0.58324 1.16005 1.36620 1.42934 1.55172 2.03733 2.15757 2.19500 2.67801 2.89459 2.92358 3.52019 3.67100 3.74496 3.82876 4.01737 4.04861 4.06658 4.11065 4.24374 4.38904 4.42069 4.48618 4.51045 4.56436 4.58688 4.65054 4.68843 4.72970 4.85850 4.91196 4.97730 4.98852 5.03680 5.19068 5.20554 5.32607 5.35959 5.59982 5.64344 5.74799 5.85461 5.98740 6.04754 6.23593 6.32016 6.50673 6.55842 6.79019 6.93002 6.97919 7.39412 8.09156 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.003215 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.912781 B = 8707.904218 C = 9796.148501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.049 3.951 4 C 0.069 3.931 5 N -0.594 5.594 6 C 0.162 3.838 7 C -0.160 4.160 8 C -0.070 4.070 9 C -0.175 4.175 10 C 0.091 3.909 11 N -0.507 5.507 12 C 0.105 3.895 13 C 0.579 3.421 14 O -0.594 6.594 15 C -0.299 4.299 16 C -0.056 4.056 17 C -0.210 4.210 18 C 0.100 3.900 19 C -0.476 4.476 20 H 0.083 0.917 21 C 0.048 3.952 22 N -0.778 5.778 23 Si 0.979 3.021 24 H -0.258 1.258 25 H -0.259 1.259 26 H -0.260 1.260 27 C -0.261 4.261 28 C -0.033 4.033 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.137 0.863 43 H 0.109 0.891 44 H 0.300 0.700 45 H 0.100 0.900 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 9.247 -7.801 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.028 4.028 4 C -0.052 4.052 5 N -0.324 5.324 6 C 0.040 3.960 7 C -0.163 4.163 8 C -0.097 4.097 9 C -0.195 4.195 10 C -0.066 4.066 11 N -0.216 5.216 12 C -0.052 4.052 13 C 0.373 3.627 14 O -0.478 6.478 15 C -0.303 4.303 16 C -0.074 4.074 17 C -0.229 4.229 18 C 0.097 3.903 19 C -0.502 4.502 20 H 0.101 0.899 21 C -0.174 4.174 22 N -0.400 5.400 23 Si 0.798 3.202 24 H -0.182 1.182 25 H -0.183 1.183 26 H -0.184 1.184 27 C -0.280 4.280 28 C -0.052 4.052 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.173 0.827 40 H 0.199 0.801 41 H 0.191 0.809 42 H 0.154 0.846 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.702 9.889 -7.947 15.384 hybrid contribution 0.380 -1.289 0.330 1.384 sum -8.322 8.600 -7.617 14.185 Atomic orbital electron populations 1.22878 0.79687 1.03267 1.01025 1.87957 1.21293 1.28442 1.95567 1.22989 0.92017 0.85246 1.02542 1.22579 0.94232 1.00240 0.88196 1.47607 1.44906 1.33093 1.06807 1.20261 0.96297 0.94493 0.84993 1.21359 0.98803 0.96744 0.99396 1.21787 0.93334 1.00177 0.94403 1.22429 1.01347 0.93667 1.02050 1.23241 0.93690 0.96598 0.93045 1.67731 1.05575 1.37252 1.11044 1.22923 0.98187 0.87589 0.96470 1.18475 0.77135 0.78396 0.88650 1.90583 1.59154 1.62257 1.35765 1.19069 0.96433 1.20097 0.94684 1.20935 0.98622 0.96071 0.91813 1.20922 0.96035 1.08557 0.97356 1.18030 0.91861 0.87490 0.92898 1.20065 1.08772 1.28975 0.92430 0.89853 1.26895 0.92218 0.96085 1.02248 1.69799 1.19232 1.21913 1.29030 0.85246 0.79502 0.78888 0.76570 1.18209 1.18343 1.18408 1.20709 0.98892 1.13295 0.95141 1.20371 0.94292 0.94774 0.95780 0.89816 0.92963 0.92594 0.90120 0.90599 0.87207 0.89477 0.86756 0.90704 0.85846 0.82664 0.80084 0.80890 0.84617 0.87323 0.88883 0.88203 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.98 9.45 -148.98 -1.41 -12.39 16 3 C 0.05 1.05 5.79 71.98 0.42 1.47 16 4 C 0.07 1.99 5.65 86.38 0.49 2.48 16 5 N -0.59 -19.50 2.64 -829.81 -2.19 -21.68 16 6 C 0.16 4.31 5.38 85.63 0.46 4.77 16 7 C -0.16 -4.18 5.48 -19.77 -0.11 -4.29 16 8 C -0.07 -1.94 9.81 22.47 0.22 -1.72 16 9 C -0.18 -3.96 10.11 22.36 0.23 -3.73 16 10 C 0.09 1.97 11.18 84.69 0.95 2.92 16 11 N -0.51 -12.67 10.36 -195.84 -2.03 -14.70 16 12 C 0.11 2.47 10.86 84.67 0.92 3.39 16 13 C 0.58 24.75 7.33 86.73 0.64 25.38 16 14 O -0.59 -27.87 15.91 -3.99 -0.06 -27.93 16 15 C -0.30 -14.01 5.43 -19.93 -0.11 -14.12 16 16 C -0.06 -2.58 7.34 22.25 0.16 -2.41 16 17 C -0.21 -10.58 8.73 22.47 0.20 -10.38 16 18 C 0.10 5.29 5.62 -21.28 -0.12 5.17 16 19 C -0.48 -24.34 8.99 23.46 0.21 -24.13 16 20 H 0.08 4.12 7.99 -2.91 -0.02 4.10 16 21 C 0.05 2.20 4.93 85.35 0.42 2.63 16 22 N -0.78 -36.49 11.23 21.87 0.25 -36.24 16 23 Si 0.98 34.58 29.65 68.60 2.03 36.62 16 24 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 25 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 26 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 27 C -0.26 -13.23 9.73 22.47 0.22 -13.02 16 28 C -0.03 -1.62 9.55 22.25 0.21 -1.40 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.22 6.16 -2.39 -0.01 1.20 16 34 H 0.11 3.91 3.15 -3.84 -0.01 3.90 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.11 2.24 5.76 -2.39 -0.01 2.23 16 37 H 0.07 2.24 7.42 -2.39 -0.02 2.23 16 38 H 0.12 3.80 7.54 -2.91 -0.02 3.77 16 39 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 40 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 42 H 0.14 5.62 4.66 -2.91 -0.01 5.60 16 43 H 0.11 5.54 6.08 -2.91 -0.02 5.53 16 44 H 0.30 12.33 8.29 -92.70 -0.77 11.56 16 45 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.10 4.52 8.03 -2.91 -0.02 4.50 16 Total: -1.00 -65.92 381.49 4.24 -61.68 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: 1.00 Total: 39.88 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 6.65 Total: -25.24 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -3.97 Total: -72.63 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.47 Total: -40.32 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.62 kcal Total: -65.92 4.24 -61.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270266601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.264 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds