Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99999 * 2 1 4 4 C 1.52999 * 109.47097 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47099 * 65.00382 * 4 3 2 6 6 C 1.36021 * 116.99909 * 179.97438 * 5 4 3 7 7 C 1.38655 * 119.99488 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.03941 * 179.70010 * 7 6 5 9 9 C 1.38850 * 120.02536 * 0.55279 * 8 7 6 10 10 N 1.40102 * 120.00787 * 179.71658 * 9 8 7 11 11 C 1.34780 * 120.00191 * 214.80484 * 10 9 8 12 12 O 1.21299 * 119.99556 * 355.65939 * 11 10 9 13 13 C 1.50699 * 120.00279 * 175.65432 * 11 10 9 14 14 H 1.08998 * 109.46934 * 39.99854 * 13 11 10 15 15 N 1.46898 * 109.47110 * 160.00519 * 13 11 10 16 16 C 1.52998 * 109.46985 * 280.00508 * 13 11 10 17 17 C 1.53002 * 109.46996 * 174.99993 * 16 13 11 18 18 C 1.50701 * 109.46886 * 179.97438 * 17 16 13 19 19 H 1.07996 * 120.00502 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99769 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00150 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47366 * 89.99906 * 22 20 18 24 24 H 1.48498 * 109.47119 * 209.99654 * 22 20 18 25 25 H 1.48494 * 109.47120 * 329.99907 * 22 20 18 26 26 C 1.38832 * 119.98463 * 359.44995 * 9 8 7 27 27 C 1.38276 * 119.95903 * 0.26845 * 26 9 8 28 28 F 1.35102 * 120.00962 * 180.02562 * 27 26 9 29 29 H 1.08994 * 109.47375 * 60.00002 * 1 2 3 30 30 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46898 * 299.99625 * 1 2 3 32 32 H 1.09000 * 109.47246 * 59.99990 * 3 2 1 33 33 H 1.08998 * 109.46762 * 300.00395 * 3 2 1 34 34 H 1.08994 * 109.47552 * 304.99596 * 4 3 2 35 35 H 1.09005 * 109.46855 * 184.99648 * 4 3 2 36 36 H 1.08002 * 119.97860 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.98790 * 180.29676 * 8 7 6 38 38 H 0.96997 * 120.00344 * 35.08681 * 10 9 8 39 39 H 1.00899 * 111.00047 * 59.99959 * 15 13 11 40 40 H 1.00903 * 111.00121 * 183.95656 * 15 13 11 41 41 H 1.09006 * 109.47162 * 294.99768 * 16 13 11 42 42 H 1.09003 * 109.47447 * 54.99692 * 16 13 11 43 43 H 1.09001 * 109.47113 * 299.99437 * 17 16 13 44 44 H 1.08992 * 109.47035 * 60.00005 * 17 16 13 45 45 H 0.96999 * 120.00125 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.02628 * 180.25431 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3043 0.3982 -1.3813 7 6 6.1824 0.7949 -0.3843 8 6 7.5412 0.6059 -0.5443 9 6 8.0300 0.0287 -1.7088 10 7 9.4088 -0.1575 -1.8732 11 6 9.9652 -0.0303 -3.0943 12 8 9.2626 0.1673 -4.0631 13 6 11.4599 -0.1335 -3.2558 14 1 11.8409 -0.9270 -2.6128 15 7 11.7811 -0.4410 -4.6558 16 6 12.1082 1.1957 -2.8639 17 6 13.6309 1.0531 -2.9079 18 6 14.2694 2.3626 -2.5225 19 1 13.6511 3.2115 -2.2709 20 6 15.6431 2.4766 -2.4901 21 7 16.3961 1.4424 -2.7950 22 14 16.4347 4.0995 -2.0117 23 1 16.6457 4.1332 -0.5421 24 1 17.7421 4.2353 -2.7026 25 1 15.5456 5.2202 -2.4099 26 6 7.1517 -0.3689 -2.7078 27 6 5.7910 -0.1846 -2.5444 28 9 4.9354 -0.5715 -3.5157 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.8033 1.2473 0.5202 37 1 8.2242 0.9108 0.2348 38 1 9.9625 -0.3819 -1.1091 39 1 11.4381 0.2804 -5.2723 40 1 12.7732 -0.5790 -4.7774 41 1 11.7957 1.9722 -3.5621 42 1 11.7978 1.4680 -1.8550 43 1 13.9435 0.2767 -2.2096 44 1 13.9413 0.7809 -3.9166 45 1 17.3625 1.5227 -2.7726 46 1 7.5309 -0.8216 -3.6120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424107434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = -143.232429 kcal Electronic energy + Delta-G solvation = -28528.022868 eV Core-core repulsion = 24139.556186 eV Total energy + Delta-G solvation = -4388.466682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.80339 -40.72618 -39.83677 -38.34243 -37.45370 -35.57641 -34.39454 -32.91010 -31.35232 -30.77342 -29.96617 -28.93937 -26.84745 -26.45463 -24.46959 -23.96830 -22.53577 -22.15380 -20.75137 -19.95690 -18.75388 -18.05935 -17.64731 -17.29710 -16.69750 -16.27901 -16.09843 -15.96749 -15.83021 -15.48128 -15.12221 -14.98494 -14.87741 -14.51172 -14.42072 -14.23346 -13.79840 -13.30415 -13.28535 -13.06941 -12.99497 -12.60471 -12.53350 -12.25393 -12.07145 -11.88385 -11.77620 -11.42840 -11.37800 -11.13845 -10.98243 -10.72346 -10.18616 -10.08360 -10.02010 -9.93427 -9.39929 -9.28629 -9.00781 -8.48511 -8.29213 -7.91620 -6.12834 -4.16232 0.94908 1.02223 2.67079 2.73732 2.98236 3.23954 3.24354 3.31235 3.34296 3.44112 4.08269 4.33230 4.35679 4.54596 4.58466 4.68462 4.76045 4.82764 4.88030 4.92426 4.93849 5.01247 5.07604 5.16601 5.23474 5.25193 5.33681 5.45555 5.54562 5.64431 5.73852 5.88430 6.02345 6.18699 6.25091 6.43327 6.60786 6.66335 6.79470 7.08081 7.26113 7.44884 7.49201 7.56939 7.81659 7.84139 8.19714 8.26280 8.89626 9.49040 10.97985 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.001855 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.674495 B =15088.150021 C =16087.473501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.060 3.940 5 O -0.301 6.301 6 C 0.078 3.922 7 C -0.164 4.164 8 C -0.116 4.116 9 C 0.148 3.852 10 N -0.674 5.674 11 C 0.525 3.475 12 O -0.516 6.516 13 C 0.078 3.922 14 H 0.101 0.899 15 N -0.831 5.831 16 C -0.138 4.138 17 C 0.024 3.976 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.121 4.121 27 C 0.090 3.910 28 F -0.130 7.130 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.415 0.585 39 H 0.347 0.653 40 H 0.357 0.643 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.781 -2.553 8.928 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.214 6.214 6 C 0.031 3.969 7 C -0.183 4.183 8 C -0.136 4.136 9 C 0.053 3.947 10 N -0.321 5.321 11 C 0.313 3.687 12 O -0.390 6.390 13 C -0.038 4.038 14 H 0.119 0.881 15 N -0.363 5.363 16 C -0.178 4.178 17 C -0.013 4.013 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.142 4.142 27 C 0.069 3.931 28 F -0.108 7.108 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.252 0.748 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -27.555 -3.343 8.090 28.912 hybrid contribution 1.134 2.011 0.823 2.452 sum -26.421 -1.331 8.913 27.915 Atomic orbital electron populations 1.22767 0.80726 1.03087 0.99984 1.87978 1.19911 1.27011 1.95415 1.22575 0.91444 0.85889 1.01530 1.22884 0.93862 0.98320 0.86506 1.86197 1.18901 1.77209 1.39141 1.18908 0.83571 1.00018 0.94392 1.20858 0.92987 1.05230 0.99253 1.20800 0.95224 0.99615 0.98008 1.17358 0.83560 0.98849 0.94946 1.43600 1.05849 1.70648 1.11965 1.21207 0.91365 0.74309 0.81775 1.90651 1.63577 1.46394 1.38354 1.21469 0.88924 1.00067 0.93309 0.88128 1.58745 1.22090 1.51961 1.03517 1.22408 1.00415 0.93945 1.01013 1.19109 0.87147 0.97597 0.97450 1.21169 0.91446 0.97174 1.46593 0.92694 1.25005 0.97464 0.96582 0.95193 1.69942 1.04924 1.29748 1.48482 0.86582 0.78817 0.83959 0.78596 1.20605 1.21116 1.19895 1.21156 0.89594 1.01540 1.01890 1.16728 0.87136 1.03468 0.85736 1.91505 1.69478 1.89006 1.60853 0.93849 0.89408 0.94054 0.90964 0.91939 0.90845 0.90190 0.84248 0.84439 0.74816 0.83993 0.82733 0.92518 0.92399 0.96226 0.96315 0.92838 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.53 10.67 -40.08 -0.43 -3.95 16 3 C 0.06 0.41 6.32 37.16 0.23 0.65 16 4 C 0.06 0.44 5.12 37.16 0.19 0.63 16 5 O -0.30 -3.55 9.97 -24.66 -0.25 -3.80 16 6 C 0.08 0.94 6.69 -39.18 -0.26 0.68 16 7 C -0.16 -1.58 9.03 -39.47 -0.36 -1.93 16 8 C -0.12 -1.16 9.96 -39.40 -0.39 -1.56 16 9 C 0.15 1.86 6.30 -83.63 -0.53 1.33 16 10 N -0.67 -8.31 5.34 -9.83 -0.05 -8.36 16 11 C 0.53 8.16 6.92 -10.98 -0.08 8.08 16 12 O -0.52 -9.48 13.69 5.54 0.08 -9.41 16 13 C 0.08 1.23 3.21 -68.87 -0.22 1.01 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 15 N -0.83 -13.55 8.94 -5.66 -0.05 -13.60 16 16 C -0.14 -2.56 4.78 -26.73 -0.13 -2.69 16 17 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 18 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 22 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.12 -1.72 8.67 -39.35 -0.34 -2.06 16 27 C 0.09 1.27 7.31 -39.32 -0.29 0.98 16 28 F -0.13 -2.00 17.11 2.25 0.04 -1.96 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 35 H 0.08 0.41 7.66 -51.93 -0.40 0.02 16 36 H 0.14 0.91 6.29 -52.49 -0.33 0.58 16 37 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.42 3.90 8.82 -40.82 -0.36 3.54 16 39 H 0.35 5.76 8.58 -39.29 -0.34 5.43 16 40 H 0.36 5.85 7.55 -39.29 -0.30 5.55 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.16 2.52 6.23 -52.49 -0.33 2.20 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -33.41 391.53 -7.21 -40.63 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.57 Total: 9.44 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.60 Total: -6.01 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.63 Total: -46.73 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.60 Total: -17.16 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.41 -7.21 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424107434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.605 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds