Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99999 * 2 1 4 4 C 1.52999 * 109.47097 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47099 * 65.00382 * 4 3 2 6 6 C 1.36021 * 116.99909 * 179.97438 * 5 4 3 7 7 C 1.38655 * 119.99488 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.03941 * 179.70010 * 7 6 5 9 9 C 1.38850 * 120.02536 * 0.55279 * 8 7 6 10 10 N 1.40102 * 120.00787 * 179.71658 * 9 8 7 11 11 C 1.34780 * 120.00191 * 214.80484 * 10 9 8 12 12 O 1.21299 * 119.99556 * 355.65939 * 11 10 9 13 13 C 1.50699 * 120.00279 * 175.65432 * 11 10 9 14 14 H 1.08998 * 109.46934 * 39.99854 * 13 11 10 15 15 N 1.46898 * 109.47110 * 160.00519 * 13 11 10 16 16 C 1.52998 * 109.46985 * 280.00508 * 13 11 10 17 17 C 1.53002 * 109.46996 * 174.99993 * 16 13 11 18 18 C 1.50701 * 109.46886 * 179.97438 * 17 16 13 19 19 H 1.07996 * 120.00502 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99769 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00150 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47366 * 89.99906 * 22 20 18 24 24 H 1.48498 * 109.47119 * 209.99654 * 22 20 18 25 25 H 1.48494 * 109.47120 * 329.99907 * 22 20 18 26 26 C 1.38832 * 119.98463 * 359.44995 * 9 8 7 27 27 C 1.38276 * 119.95903 * 0.26845 * 26 9 8 28 28 F 1.35102 * 120.00962 * 180.02562 * 27 26 9 29 29 H 1.08994 * 109.47375 * 60.00002 * 1 2 3 30 30 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46898 * 299.99625 * 1 2 3 32 32 H 1.09000 * 109.47246 * 59.99990 * 3 2 1 33 33 H 1.08998 * 109.46762 * 300.00395 * 3 2 1 34 34 H 1.08994 * 109.47552 * 304.99596 * 4 3 2 35 35 H 1.09005 * 109.46855 * 184.99648 * 4 3 2 36 36 H 1.08002 * 119.97860 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.98790 * 180.29676 * 8 7 6 38 38 H 0.96997 * 120.00344 * 35.08681 * 10 9 8 39 39 H 1.00899 * 111.00047 * 59.99959 * 15 13 11 40 40 H 1.00903 * 111.00121 * 183.95656 * 15 13 11 41 41 H 1.09006 * 109.47162 * 294.99768 * 16 13 11 42 42 H 1.09003 * 109.47447 * 54.99692 * 16 13 11 43 43 H 1.09001 * 109.47113 * 299.99437 * 17 16 13 44 44 H 1.08992 * 109.47035 * 60.00005 * 17 16 13 45 45 H 0.96999 * 120.00125 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.02628 * 180.25431 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3043 0.3982 -1.3813 7 6 6.1824 0.7949 -0.3843 8 6 7.5412 0.6059 -0.5443 9 6 8.0300 0.0287 -1.7088 10 7 9.4088 -0.1575 -1.8732 11 6 9.9652 -0.0303 -3.0943 12 8 9.2626 0.1673 -4.0631 13 6 11.4599 -0.1335 -3.2558 14 1 11.8409 -0.9270 -2.6128 15 7 11.7811 -0.4410 -4.6558 16 6 12.1082 1.1957 -2.8639 17 6 13.6309 1.0531 -2.9079 18 6 14.2694 2.3626 -2.5225 19 1 13.6511 3.2115 -2.2709 20 6 15.6431 2.4766 -2.4901 21 7 16.3961 1.4424 -2.7950 22 14 16.4347 4.0995 -2.0117 23 1 16.6457 4.1332 -0.5421 24 1 17.7421 4.2353 -2.7026 25 1 15.5456 5.2202 -2.4099 26 6 7.1517 -0.3689 -2.7078 27 6 5.7910 -0.1846 -2.5444 28 9 4.9354 -0.5715 -3.5157 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.8033 1.2473 0.5202 37 1 8.2242 0.9108 0.2348 38 1 9.9625 -0.3819 -1.1091 39 1 11.4381 0.2804 -5.2723 40 1 12.7732 -0.5790 -4.7774 41 1 11.7957 1.9722 -3.5621 42 1 11.7978 1.4680 -1.8550 43 1 13.9435 0.2767 -2.2096 44 1 13.9413 0.7809 -3.9166 45 1 17.3625 1.5227 -2.7726 46 1 7.5309 -0.8216 -3.6120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424107434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = -167.663887 kcal Electronic energy + Delta-G solvation = -28529.082296 eV Core-core repulsion = 24139.556186 eV Total energy + Delta-G solvation = -4389.526110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89284 -41.76614 -40.76889 -39.06143 -38.28917 -37.04753 -35.45331 -34.83219 -32.02075 -31.68856 -31.60932 -29.90639 -28.02073 -27.26672 -25.86206 -24.94747 -23.46702 -23.13715 -22.19210 -21.20612 -19.61281 -19.10998 -18.85643 -18.25510 -17.86260 -17.53455 -16.91775 -16.89050 -16.67452 -16.57095 -16.18639 -16.12923 -15.89899 -15.83100 -15.67384 -15.42295 -14.81218 -14.74257 -14.54479 -14.13085 -13.99432 -13.61702 -13.45993 -13.43666 -13.26861 -12.93159 -12.80961 -12.67686 -12.52589 -12.48268 -12.15763 -11.98157 -11.78799 -11.68002 -11.28641 -10.96950 -10.78396 -10.67305 -10.54179 -9.97923 -9.66473 -8.85116 -8.20069 -6.30005 0.03260 0.08699 1.40515 1.41885 1.47845 1.52272 1.86711 2.07581 2.41102 2.51880 2.80173 3.14030 3.15851 3.57523 3.70414 3.72934 3.90944 4.04291 4.08547 4.11772 4.12049 4.22838 4.34242 4.35447 4.46019 4.51239 4.54402 4.58413 4.67358 4.73788 4.83417 4.86010 4.91237 5.05751 5.09439 5.11311 5.26843 5.49100 5.67174 5.68951 5.82690 6.04925 6.16439 6.22805 6.30654 6.38283 6.46443 6.85847 7.07453 7.39224 8.90511 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.001855 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.674495 B =15088.150021 C =16087.473501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.057 3.943 4 C 0.048 3.952 5 O -0.325 6.325 6 C 0.080 3.920 7 C -0.151 4.151 8 C -0.097 4.097 9 C 0.129 3.871 10 N -0.657 5.657 11 C 0.526 3.474 12 O -0.550 6.550 13 C 0.085 3.915 14 H 0.119 0.881 15 N -0.832 5.832 16 C -0.121 4.121 17 C 0.029 3.971 18 C -0.545 4.545 19 H 0.056 0.944 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.269 1.269 26 C -0.135 4.135 27 C 0.055 3.945 28 F -0.148 7.148 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.431 0.569 39 H 0.344 0.656 40 H 0.355 0.645 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.006 0.994 44 H 0.002 0.998 45 H 0.263 0.737 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.571 -0.966 11.960 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.026 4.026 5 O -0.240 6.240 6 C 0.033 3.967 7 C -0.170 4.170 8 C -0.117 4.117 9 C 0.035 3.965 10 N -0.304 5.304 11 C 0.315 3.685 12 O -0.426 6.426 13 C -0.030 4.030 14 H 0.136 0.864 15 N -0.364 5.364 16 C -0.161 4.161 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.074 0.926 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.782 3.218 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.193 1.193 26 C -0.157 4.157 27 C 0.035 3.965 28 F -0.127 7.127 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.198 0.802 37 H 0.191 0.809 38 H 0.271 0.729 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.072 0.928 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.368 -1.759 11.168 30.538 hybrid contribution 1.274 1.515 -0.062 1.980 sum -27.094 -0.244 11.106 29.283 Atomic orbital electron populations 1.22908 0.79405 1.03678 1.01026 1.87924 1.21587 1.28687 1.95671 1.22781 0.90992 0.85243 1.02871 1.23304 0.94511 0.99677 0.85112 1.86186 1.18646 1.77604 1.41528 1.19042 0.84426 0.99198 0.94017 1.21299 0.92338 1.03760 0.99608 1.21186 0.95993 0.97252 0.97224 1.17517 0.83085 1.00182 0.95754 1.43359 1.06118 1.69554 1.11397 1.21040 0.90902 0.74199 0.82389 1.90654 1.64085 1.48114 1.39730 1.21401 0.89333 0.99081 0.93192 0.86372 1.58759 1.21875 1.51818 1.03915 1.22148 0.97191 0.95131 1.01619 1.18985 0.90227 0.95804 0.95852 1.21632 0.91975 0.98450 1.46207 0.92618 1.25834 0.98214 0.99900 0.95261 1.70053 1.05160 1.31730 1.49648 0.85568 0.77714 0.79917 0.78577 1.19631 1.21033 1.19320 1.21000 0.90221 1.02623 1.01815 1.17017 0.87082 1.05642 0.86739 1.91442 1.69962 1.89497 1.61812 0.93637 0.89193 0.92126 0.87715 0.92368 0.89640 0.87406 0.80216 0.80869 0.72917 0.84292 0.82945 0.93795 0.90902 0.97575 0.97987 0.92795 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.21 10.67 -144.34 -1.54 -8.75 16 3 C 0.06 0.64 6.32 71.98 0.45 1.09 16 4 C 0.05 0.58 5.12 71.98 0.37 0.95 16 5 O -0.33 -7.30 9.97 -89.15 -0.89 -8.19 16 6 C 0.08 1.84 6.69 22.53 0.15 1.99 16 7 C -0.15 -2.36 9.03 22.34 0.20 -2.16 16 8 C -0.10 -1.59 9.96 22.39 0.22 -1.37 16 9 C 0.13 3.07 6.30 38.11 0.24 3.31 16 10 N -0.66 -15.13 5.34 -303.40 -1.62 -16.75 16 11 C 0.53 16.10 6.92 87.66 0.61 16.70 16 12 O -0.55 -20.63 13.69 -3.09 -0.04 -20.67 16 13 C 0.09 2.64 3.21 44.17 0.14 2.78 16 14 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 15 N -0.83 -27.42 8.94 -171.81 -1.54 -28.96 16 16 C -0.12 -4.40 4.78 30.59 0.15 -4.25 16 17 C 0.03 1.33 4.74 29.85 0.14 1.48 16 18 C -0.54 -28.96 9.11 25.60 0.23 -28.73 16 19 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 20 C 0.01 0.35 5.46 84.66 0.46 0.82 16 21 N -0.93 -53.17 13.29 21.45 0.28 -52.88 16 22 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C -0.14 -3.97 8.67 22.42 0.19 -3.78 16 27 C 0.06 1.61 7.31 22.44 0.16 1.78 16 28 F -0.15 -4.89 17.11 44.97 0.77 -4.12 16 29 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.82 7.66 -2.39 -0.02 0.80 16 35 H 0.11 0.67 7.66 -2.38 -0.02 0.65 16 36 H 0.18 1.33 6.29 -2.91 -0.02 1.31 16 37 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.43 6.92 8.82 -92.71 -0.82 6.11 16 39 H 0.34 11.70 8.58 -89.69 -0.77 10.93 16 40 H 0.36 11.85 7.55 -89.69 -0.68 11.18 16 41 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.00 0.09 6.87 -2.39 -0.02 0.08 16 45 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.13 4.55 6.23 -2.91 -0.02 4.53 16 Total: -1.00 -74.56 391.53 1.21 -73.35 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -1.23 Total: 30.42 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 4.98 Total: -7.87 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -2.87 Total: -98.59 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -2.47 Total: -37.61 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.77 Total: -4.12 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -74.56 1.21 -73.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424107434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.314 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds