Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00423 * 2 1 4 4 C 1.52999 * 109.47183 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46839 * 65.00403 * 4 3 2 6 6 C 1.36025 * 116.99526 * 179.97438 * 5 4 3 7 7 C 1.38522 * 120.06023 * 0.02562 * 6 5 4 8 8 C 1.38247 * 120.03903 * 179.97438 * 7 6 5 9 9 C 1.38473 * 120.15259 * 0.02562 * 8 7 6 10 10 F 1.35101 * 119.94233 * 179.97438 * 9 8 7 11 11 C 1.38382 * 120.11502 * 359.74596 * 9 8 7 12 12 C 1.38725 * 119.95629 * 0.48711 * 11 9 8 13 13 N 1.40124 * 120.07102 * 179.79347 * 12 11 9 14 14 C 1.34769 * 119.99892 * 335.18634 * 13 12 11 15 15 O 1.21303 * 120.00247 * 354.47258 * 14 13 12 16 16 C 1.50703 * 120.00170 * 174.47183 * 14 13 12 17 17 H 1.08997 * 109.46695 * 39.99545 * 16 14 13 18 18 N 1.46894 * 109.47705 * 160.00027 * 16 14 13 19 19 C 1.53004 * 109.46965 * 280.00350 * 16 14 13 20 20 C 1.52996 * 109.47065 * 174.99817 * 19 16 14 21 21 C 1.50697 * 109.47120 * 179.97438 * 20 19 16 22 22 H 1.07997 * 120.00009 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99992 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46811 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47139 * 119.99772 * 25 23 21 28 28 H 1.48499 * 109.47109 * 239.99929 * 25 23 21 29 29 H 1.09002 * 109.46723 * 59.99774 * 1 2 3 30 30 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46682 * 300.00033 * 1 2 3 32 32 H 1.09000 * 109.46724 * 59.99966 * 3 2 1 33 33 H 1.09002 * 109.46870 * 300.00224 * 3 2 1 34 34 H 1.08993 * 109.47353 * 305.00287 * 4 3 2 35 35 H 1.09002 * 109.47066 * 185.00170 * 4 3 2 36 36 H 1.08003 * 119.97986 * 359.97438 * 7 6 5 37 37 H 1.08001 * 119.92473 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.01820 * 180.27215 * 11 9 8 39 39 H 0.96991 * 119.99781 * 155.19368 * 13 12 11 40 40 H 1.00904 * 111.00046 * 296.05081 * 18 16 14 41 41 H 1.00908 * 111.00117 * 59.99638 * 18 16 14 42 42 H 1.09001 * 109.47099 * 294.99738 * 19 16 14 43 43 H 1.08998 * 109.47363 * 54.99160 * 19 16 14 44 44 H 1.09001 * 109.47098 * 299.99923 * 20 19 16 45 45 H 1.08998 * 109.47566 * 59.99467 * 20 19 16 46 46 H 0.97007 * 120.00162 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3043 0.3980 -1.3813 7 6 6.1828 0.7938 -0.3861 8 6 7.5431 0.6089 -0.5501 9 6 8.0315 0.0287 -1.7087 10 9 9.3616 -0.1494 -1.8647 11 6 7.1592 -0.3733 -2.7049 12 6 5.7938 -0.1857 -2.5473 13 7 4.9087 -0.5880 -3.5564 14 6 5.3372 -0.6813 -4.8307 15 8 6.4587 -0.3219 -5.1214 16 6 4.4230 -1.2321 -5.8947 17 1 3.4116 -0.8594 -5.7332 18 7 4.8972 -0.8040 -7.2175 19 6 4.4207 -2.7605 -5.8238 20 6 3.3998 -3.3156 -6.8190 21 6 3.3979 -4.8210 -6.7496 22 1 4.0590 -5.3308 -6.0645 23 6 2.5521 -5.5474 -7.5608 24 7 1.7467 -4.9266 -8.3947 25 14 2.5503 -7.4135 -7.4752 26 1 3.5412 -7.8636 -6.4649 27 1 1.1978 -7.8900 -7.0894 28 1 2.9109 -7.9703 -8.8038 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8509 0.5684 0.8426 35 1 3.9786 2.1764 0.0902 36 1 5.8050 1.2470 0.5185 37 1 8.2263 0.9178 0.2271 38 1 7.5415 -0.8297 -3.6060 39 1 3.9876 -0.7991 -3.3377 40 1 4.8473 0.1993 -7.3123 41 1 5.8337 -1.1373 -7.3912 42 1 5.4127 -3.1373 -6.0727 43 1 4.1543 -3.0770 -4.8154 44 1 2.4077 -2.9388 -6.5701 45 1 3.6661 -2.9990 -7.8274 46 1 1.1519 -5.4378 -8.9656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424114510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = -141.511528 kcal Electronic energy + Delta-G solvation = -29375.289515 eV Core-core repulsion = 24986.897456 eV Total energy + Delta-G solvation = -4388.392059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.90264 -41.01640 -39.73119 -38.28626 -37.19414 -35.36029 -34.82261 -32.82223 -31.29629 -30.48248 -30.13005 -28.99699 -26.69759 -26.45680 -24.48785 -23.88344 -22.34350 -22.19396 -20.69721 -19.87736 -18.81503 -18.06582 -17.50061 -17.24350 -16.53574 -16.29865 -16.06693 -16.02484 -15.73034 -15.60137 -15.36717 -15.22803 -14.81470 -14.66916 -14.36275 -14.25545 -13.75478 -13.57945 -13.26593 -13.01435 -12.79332 -12.50477 -12.34026 -12.12717 -12.00026 -11.74793 -11.60755 -11.45208 -11.12699 -10.90889 -10.72325 -10.58772 -10.54591 -10.11910 -10.08230 -9.81587 -9.39094 -8.99182 -8.80796 -8.41290 -8.24066 -7.94895 -5.93735 -3.95706 0.89851 0.99751 2.55844 2.70383 3.00321 3.31907 3.34695 3.42240 3.42884 3.46606 4.14747 4.34315 4.50075 4.50624 4.61371 4.62009 4.73978 4.78807 4.85907 4.96207 5.01007 5.02231 5.05671 5.20571 5.27050 5.41782 5.42254 5.45401 5.52291 5.69827 5.76111 5.84788 5.99098 6.26680 6.41251 6.56166 6.61308 6.72778 7.04267 7.06579 7.25513 7.45157 7.73256 7.76669 7.95207 8.08128 8.12415 8.48212 9.12269 9.67626 11.17175 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008031 B = 0.003056 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3485.683879 B = 9160.518011 C =11357.503432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.061 3.939 4 C 0.063 3.937 5 O -0.304 6.304 6 C 0.089 3.911 7 C -0.162 4.162 8 C -0.139 4.139 9 C 0.085 3.915 10 F -0.138 7.138 11 C -0.135 4.135 12 C 0.161 3.839 13 N -0.659 5.659 14 C 0.483 3.517 15 O -0.533 6.533 16 C 0.082 3.918 17 H 0.102 0.898 18 N -0.805 5.805 19 C -0.097 4.097 20 C 0.031 3.969 21 C -0.522 4.522 22 H 0.053 0.947 23 C 0.058 3.942 24 N -0.892 5.892 25 Si 0.888 3.112 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.284 1.284 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.422 0.578 40 H 0.335 0.665 41 H 0.349 0.651 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.014 0.986 45 H 0.036 0.964 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 17.234 20.730 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.218 6.218 6 C 0.041 3.959 7 C -0.182 4.182 8 C -0.159 4.159 9 C 0.065 3.935 10 F -0.117 7.117 11 C -0.156 4.156 12 C 0.064 3.936 13 N -0.304 5.304 14 C 0.271 3.729 15 O -0.409 6.409 16 C -0.034 4.034 17 H 0.120 0.880 18 N -0.332 5.332 19 C -0.135 4.135 20 C -0.006 4.006 21 C -0.560 4.560 22 H 0.071 0.929 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.717 3.283 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.182 0.818 39 H 0.259 0.741 40 H 0.147 0.853 41 H 0.163 0.837 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.054 0.946 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.775 16.754 19.851 26.124 hybrid contribution 0.333 -0.265 0.988 1.076 sum 3.109 16.490 20.839 26.755 Atomic orbital electron populations 1.22791 0.80473 1.03365 0.99958 1.87981 1.20097 1.26687 1.95413 1.22565 0.91290 0.86158 1.01530 1.22867 0.93968 0.98119 0.86315 1.86101 1.18993 1.77354 1.39353 1.18635 0.83328 0.99166 0.94760 1.20812 0.92744 1.05250 0.99360 1.20839 0.95687 1.02111 0.97228 1.17345 0.77675 1.02963 0.95527 1.91496 1.30690 1.93583 1.95928 1.21248 0.90915 1.02459 1.00973 1.16864 0.89621 0.99194 0.87932 1.43728 1.14425 1.65975 1.06256 1.23175 0.89768 0.76424 0.83582 1.90620 1.20950 1.47839 1.81491 1.21892 0.96954 0.99497 0.85054 0.88003 1.58996 1.31593 1.16926 1.25726 1.21702 1.02431 0.87758 1.01609 1.19019 0.92379 0.94584 0.94580 1.21308 1.21255 0.92056 1.21381 0.92890 1.24985 0.95621 0.98257 0.95451 1.69982 1.24031 1.35131 1.24036 0.86597 0.77721 0.86203 0.77828 1.19827 1.21101 1.21061 0.93686 0.89169 0.94165 0.91085 0.91906 0.90870 0.90358 0.84280 0.84519 0.81753 0.74102 0.85277 0.83667 0.92651 0.92602 0.96775 0.94605 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.71 10.67 -40.09 -0.43 -4.14 16 3 C 0.06 0.41 6.32 37.16 0.23 0.65 16 4 C 0.06 0.44 5.12 37.16 0.19 0.63 16 5 O -0.30 -3.24 9.51 -24.67 -0.23 -3.47 16 6 C 0.09 1.02 6.70 -39.09 -0.26 0.75 16 7 C -0.16 -1.51 9.03 -39.47 -0.36 -1.87 16 8 C -0.14 -1.40 10.02 -39.49 -0.40 -1.79 16 9 C 0.08 1.09 7.29 -39.44 -0.29 0.80 16 10 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 11 C -0.13 -1.94 8.70 -39.35 -0.34 -2.29 16 12 C 0.16 2.19 6.45 -83.50 -0.54 1.66 16 13 N -0.66 -9.07 5.29 -9.75 -0.05 -9.13 16 14 C 0.48 7.53 6.87 -10.99 -0.08 7.45 16 15 O -0.53 -9.34 13.42 5.54 0.07 -9.26 16 16 C 0.08 1.34 3.15 -68.86 -0.22 1.13 16 17 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 18 N -0.80 -13.15 8.44 -5.66 -0.05 -13.20 16 19 C -0.10 -1.93 4.78 -26.73 -0.13 -2.05 16 20 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 21 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 22 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 25 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.08 0.37 7.66 -51.93 -0.40 -0.03 16 36 H 0.14 0.85 6.29 -52.48 -0.33 0.52 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.17 2.68 5.79 -52.49 -0.30 2.37 16 39 H 0.42 5.23 8.34 -40.82 -0.34 4.89 16 40 H 0.34 4.73 9.06 -39.29 -0.36 4.38 16 41 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -33.79 392.14 -7.27 -41.06 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.64 Total: 9.80 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.61 Total: -6.40 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.64 Total: -48.41 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.59 Total: -16.87 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.79 -7.27 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.452 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds