Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00423 * 2 1 4 4 C 1.52999 * 109.47183 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46839 * 65.00403 * 4 3 2 6 6 C 1.36025 * 116.99526 * 179.97438 * 5 4 3 7 7 C 1.38522 * 120.06023 * 0.02562 * 6 5 4 8 8 C 1.38247 * 120.03903 * 179.97438 * 7 6 5 9 9 C 1.38473 * 120.15259 * 0.02562 * 8 7 6 10 10 F 1.35101 * 119.94233 * 179.97438 * 9 8 7 11 11 C 1.38382 * 120.11502 * 359.74596 * 9 8 7 12 12 C 1.38725 * 119.95629 * 0.48711 * 11 9 8 13 13 N 1.40124 * 120.07102 * 179.79347 * 12 11 9 14 14 C 1.34769 * 119.99892 * 335.18634 * 13 12 11 15 15 O 1.21303 * 120.00247 * 354.47258 * 14 13 12 16 16 C 1.50703 * 120.00170 * 174.47183 * 14 13 12 17 17 H 1.08997 * 109.46695 * 39.99545 * 16 14 13 18 18 N 1.46894 * 109.47705 * 160.00027 * 16 14 13 19 19 C 1.53004 * 109.46965 * 280.00350 * 16 14 13 20 20 C 1.52996 * 109.47065 * 174.99817 * 19 16 14 21 21 C 1.50697 * 109.47120 * 179.97438 * 20 19 16 22 22 H 1.07997 * 120.00009 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99992 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46811 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47139 * 119.99772 * 25 23 21 28 28 H 1.48499 * 109.47109 * 239.99929 * 25 23 21 29 29 H 1.09002 * 109.46723 * 59.99774 * 1 2 3 30 30 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46682 * 300.00033 * 1 2 3 32 32 H 1.09000 * 109.46724 * 59.99966 * 3 2 1 33 33 H 1.09002 * 109.46870 * 300.00224 * 3 2 1 34 34 H 1.08993 * 109.47353 * 305.00287 * 4 3 2 35 35 H 1.09002 * 109.47066 * 185.00170 * 4 3 2 36 36 H 1.08003 * 119.97986 * 359.97438 * 7 6 5 37 37 H 1.08001 * 119.92473 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.01820 * 180.27215 * 11 9 8 39 39 H 0.96991 * 119.99781 * 155.19368 * 13 12 11 40 40 H 1.00904 * 111.00046 * 296.05081 * 18 16 14 41 41 H 1.00908 * 111.00117 * 59.99638 * 18 16 14 42 42 H 1.09001 * 109.47099 * 294.99738 * 19 16 14 43 43 H 1.08998 * 109.47363 * 54.99160 * 19 16 14 44 44 H 1.09001 * 109.47098 * 299.99923 * 20 19 16 45 45 H 1.08998 * 109.47566 * 59.99467 * 20 19 16 46 46 H 0.97007 * 120.00162 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3043 0.3980 -1.3813 7 6 6.1828 0.7938 -0.3861 8 6 7.5431 0.6089 -0.5501 9 6 8.0315 0.0287 -1.7087 10 9 9.3616 -0.1494 -1.8647 11 6 7.1592 -0.3733 -2.7049 12 6 5.7938 -0.1857 -2.5473 13 7 4.9087 -0.5880 -3.5564 14 6 5.3372 -0.6813 -4.8307 15 8 6.4587 -0.3219 -5.1214 16 6 4.4230 -1.2321 -5.8947 17 1 3.4116 -0.8594 -5.7332 18 7 4.8972 -0.8040 -7.2175 19 6 4.4207 -2.7605 -5.8238 20 6 3.3998 -3.3156 -6.8190 21 6 3.3979 -4.8210 -6.7496 22 1 4.0590 -5.3308 -6.0645 23 6 2.5521 -5.5474 -7.5608 24 7 1.7467 -4.9266 -8.3947 25 14 2.5503 -7.4135 -7.4752 26 1 3.5412 -7.8636 -6.4649 27 1 1.1978 -7.8900 -7.0894 28 1 2.9109 -7.9703 -8.8038 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8509 0.5684 0.8426 35 1 3.9786 2.1764 0.0902 36 1 5.8050 1.2470 0.5185 37 1 8.2263 0.9178 0.2271 38 1 7.5415 -0.8297 -3.6060 39 1 3.9876 -0.7991 -3.3377 40 1 4.8473 0.1993 -7.3123 41 1 5.8337 -1.1373 -7.3912 42 1 5.4127 -3.1373 -6.0727 43 1 4.1543 -3.0770 -4.8154 44 1 2.4077 -2.9388 -6.5701 45 1 3.6661 -2.9990 -7.8274 46 1 1.1519 -5.4378 -8.9656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424114510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = -166.195110 kcal Electronic energy + Delta-G solvation = -29376.359875 eV Core-core repulsion = 24986.897456 eV Total energy + Delta-G solvation = -4389.462419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.89074 -42.03987 -40.71969 -38.97597 -37.99678 -36.87941 -35.93703 -34.84237 -31.98108 -31.87650 -31.42984 -29.87343 -28.12431 -27.23421 -25.86040 -24.91150 -23.48631 -22.96058 -22.27672 -21.21832 -19.72353 -18.96295 -18.74337 -18.24136 -17.83194 -17.50850 -17.15896 -16.88582 -16.73438 -16.57845 -16.44477 -16.15669 -16.00844 -15.84017 -15.72364 -15.28270 -15.09604 -14.69717 -14.29096 -14.13209 -13.84316 -13.72467 -13.55207 -13.43631 -13.12154 -12.87806 -12.82731 -12.50162 -12.36764 -12.29326 -12.13780 -11.78350 -11.74195 -11.70993 -11.53920 -11.23751 -10.97384 -10.63071 -10.49429 -9.78722 -9.67697 -8.87411 -8.14047 -6.23955 -0.02801 0.09444 1.35906 1.41352 1.42480 1.54829 1.82914 2.07843 2.44457 2.50531 2.83883 3.19127 3.20532 3.45775 3.62067 3.72055 3.84745 4.00960 4.03964 4.11841 4.15037 4.25004 4.25492 4.38881 4.44223 4.53704 4.57125 4.60964 4.74569 4.77115 4.84018 4.91814 4.91900 5.02646 5.09128 5.22508 5.25936 5.57276 5.64282 5.83585 5.98050 6.01494 6.19622 6.25412 6.30131 6.31832 6.48473 6.90332 6.94316 7.44069 8.97322 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008031 B = 0.003056 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3485.683879 B = 9160.518011 C =11357.503432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.056 3.944 4 C 0.052 3.948 5 O -0.320 6.320 6 C 0.096 3.904 7 C -0.150 4.150 8 C -0.121 4.121 9 C 0.063 3.937 10 F -0.148 7.148 11 C -0.154 4.154 12 C 0.131 3.869 13 N -0.650 5.650 14 C 0.489 3.511 15 O -0.554 6.554 16 C 0.091 3.909 17 H 0.114 0.886 18 N -0.815 5.815 19 C -0.083 4.083 20 C 0.040 3.960 21 C -0.543 4.543 22 H 0.054 0.946 23 C 0.003 3.997 24 N -0.928 5.928 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.280 1.280 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.137 0.863 39 H 0.427 0.573 40 H 0.348 0.652 41 H 0.347 0.653 42 H 0.045 0.955 43 H 0.064 0.936 44 H -0.004 1.004 45 H 0.008 0.992 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 18.145 23.753 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.020 4.020 4 C -0.022 4.022 5 O -0.235 6.235 6 C 0.048 3.952 7 C -0.168 4.168 8 C -0.140 4.140 9 C 0.043 3.957 10 F -0.127 7.127 11 C -0.175 4.175 12 C 0.035 3.965 13 N -0.295 5.295 14 C 0.276 3.724 15 O -0.432 6.432 16 C -0.025 4.025 17 H 0.132 0.868 18 N -0.344 5.344 19 C -0.121 4.121 20 C 0.003 3.997 21 C -0.582 4.582 22 H 0.072 0.928 23 C -0.195 4.195 24 N -0.569 5.569 25 Si 0.784 3.216 26 H -0.190 1.190 27 H -0.202 1.202 28 H -0.206 1.206 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.199 0.801 37 H 0.188 0.812 38 H 0.154 0.846 39 H 0.265 0.735 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.014 0.986 45 H 0.027 0.973 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.551 17.685 22.912 29.055 hybrid contribution 0.349 -0.469 0.141 0.601 sum 2.900 17.216 23.052 28.917 Atomic orbital electron populations 1.22883 0.79600 1.03510 1.00970 1.87929 1.21308 1.28638 1.95659 1.22786 0.91094 0.85287 1.02854 1.23261 0.94268 0.99634 0.85071 1.86104 1.18365 1.77588 1.41398 1.18709 0.84255 0.98086 0.94150 1.21270 0.91946 1.03741 0.99891 1.21221 0.96643 0.99769 0.96377 1.17574 0.77155 1.04437 0.96549 1.91465 1.31298 1.93837 1.96096 1.21085 0.91867 1.03720 1.00839 1.17007 0.89287 1.01226 0.88982 1.43528 1.14737 1.65443 1.05767 1.22764 0.89030 0.76531 0.84046 1.90622 1.21631 1.49067 1.81919 1.21638 0.97985 0.97106 0.85726 0.86776 1.58977 1.31502 1.18078 1.25823 1.21414 1.00052 0.90289 1.00394 1.18820 0.92783 0.93610 0.94484 1.21745 1.21265 0.93712 1.21436 0.92782 1.25875 0.95185 1.03424 0.95010 1.70104 1.24779 1.37160 1.24825 0.85501 0.78124 0.79994 0.78023 1.18979 1.20209 1.20603 0.93625 0.89591 0.92172 0.88049 0.92195 0.89842 0.87323 0.80107 0.81248 0.84574 0.73471 0.83799 0.83899 0.93632 0.91703 0.98590 0.97309 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -7.38 10.67 -144.34 -1.54 -8.92 16 3 C 0.06 0.60 6.32 71.98 0.45 1.06 16 4 C 0.05 0.54 5.12 71.98 0.37 0.91 16 5 O -0.32 -6.09 9.51 -89.19 -0.85 -6.94 16 6 C 0.10 1.99 6.70 22.59 0.15 2.14 16 7 C -0.15 -2.21 9.03 22.34 0.20 -2.01 16 8 C -0.12 -2.06 10.02 22.33 0.22 -1.83 16 9 C 0.06 1.57 7.29 22.36 0.16 1.74 16 10 F -0.15 -4.02 17.26 44.97 0.78 -3.24 16 11 C -0.15 -4.54 8.70 22.42 0.19 -4.35 16 12 C 0.13 3.54 6.45 38.18 0.25 3.79 16 13 N -0.65 -18.04 5.29 -303.14 -1.60 -19.64 16 14 C 0.49 15.61 6.87 87.66 0.60 16.22 16 15 O -0.55 -20.17 13.42 -3.10 -0.04 -20.21 16 16 C 0.09 3.06 3.15 44.17 0.14 3.20 16 17 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 18 N -0.81 -27.39 8.44 -171.81 -1.45 -28.84 16 19 C -0.08 -3.40 4.78 30.59 0.15 -3.26 16 20 C 0.04 2.10 4.86 29.85 0.15 2.25 16 21 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 22 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 23 C 0.00 0.17 5.46 84.66 0.46 0.63 16 24 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 25 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16 35 H 0.11 0.48 7.66 -2.39 -0.02 0.46 16 36 H 0.18 1.13 6.29 -2.91 -0.02 1.11 16 37 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.14 4.75 5.79 -2.91 -0.02 4.73 16 39 H 0.43 10.58 8.34 -92.72 -0.77 9.80 16 40 H 0.35 10.00 9.06 -89.69 -0.81 9.18 16 41 H 0.35 11.89 8.58 -89.69 -0.77 11.12 16 42 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 46 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -75.30 392.14 1.27 -74.03 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -1.32 Total: 32.17 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.98 Total: -8.89 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -2.77 Total: -104.94 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -2.43 Total: -36.07 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.24 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -75.30 1.27 -74.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424114510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.164 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds