Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00234 * 2 1 4 4 C 1.52998 * 109.46657 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47614 * 64.73881 * 4 3 2 6 6 C 1.46497 * 120.00102 * 87.58559 * 5 4 3 7 7 C 1.52994 * 109.46881 * 84.57880 * 6 5 4 8 8 O 1.42904 * 109.47227 * 65.34193 * 7 6 5 9 9 C 1.35946 * 117.00033 * 179.97438 * 8 7 6 10 10 C 1.38710 * 120.03379 * 359.72261 * 9 8 7 11 11 C 1.38147 * 119.97460 * 179.78906 * 10 9 8 12 12 C 1.38460 * 120.02654 * 0.49015 * 11 10 9 13 13 F 1.35102 * 119.96901 * 179.72269 * 12 11 10 14 14 C 1.38454 * 120.05961 * 359.74389 * 12 11 10 15 15 C 1.38152 * 120.03292 * 0.02562 * 14 12 11 16 16 C 1.34771 * 119.99502 * 267.59318 * 5 4 3 17 17 O 1.21596 * 119.99804 * 179.97438 * 16 5 4 18 18 N 1.34772 * 120.00457 * 359.97438 * 16 5 4 19 19 C 1.46501 * 120.00585 * 180.02562 * 18 16 5 20 20 C 1.50694 * 109.47760 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99660 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00334 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00187 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47343 * 89.99512 * 24 22 20 26 26 H 1.48501 * 109.47404 * 209.99771 * 24 22 20 27 27 H 1.48502 * 109.46799 * 329.99518 * 24 22 20 28 28 H 1.08993 * 109.47380 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46745 * 300.00092 * 1 2 3 30 30 H 1.09002 * 109.46786 * 59.99231 * 1 2 3 31 31 H 1.08999 * 109.47140 * 60.00353 * 3 2 1 32 32 H 1.08995 * 109.47165 * 300.00038 * 3 2 1 33 33 H 1.08994 * 109.47410 * 304.72907 * 4 3 2 34 34 H 1.09004 * 109.46984 * 184.73226 * 4 3 2 35 35 H 1.08994 * 109.47512 * 324.58007 * 6 5 4 36 36 H 1.09003 * 109.46955 * 204.57329 * 6 5 4 37 37 H 1.09004 * 109.47547 * 305.34001 * 7 6 5 38 38 H 1.09007 * 109.47361 * 185.34043 * 7 6 5 39 39 H 1.08008 * 120.00830 * 0.02562 * 10 9 8 40 40 H 1.07991 * 119.98805 * 180.20791 * 11 10 9 41 41 H 1.08001 * 119.98528 * 180.02562 * 14 12 11 42 42 H 1.07998 * 120.01406 * 179.97438 * 15 14 12 43 43 H 0.97005 * 120.00168 * 359.97438 * 18 16 5 44 44 H 1.09005 * 109.46644 * 300.00087 * 19 18 16 45 45 H 1.09004 * 109.47373 * 59.99215 * 19 18 16 46 46 H 0.96999 * 120.00068 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9753 0.5584 -1.2500 6 6 4.2348 1.3847 -2.4316 7 6 5.6609 1.9349 -2.3658 8 8 6.5927 0.8552 -2.4560 9 6 7.9134 1.1746 -2.4133 10 6 8.3036 2.5002 -2.2929 11 6 9.6460 2.8230 -2.2452 12 6 10.6019 1.8248 -2.3277 13 9 11.9145 2.1423 -2.2865 14 6 10.2140 0.5016 -2.4527 15 6 8.8722 0.1756 -2.4959 16 6 4.1410 -0.7776 -1.3124 17 8 4.5056 -1.2973 -2.3495 18 7 3.9026 -1.5377 -0.2253 19 6 4.0833 -2.9900 -0.2928 20 6 3.7545 -3.6000 1.0453 21 1 3.4426 -2.9690 1.8644 22 6 3.8529 -4.9635 1.2243 23 7 4.2332 -5.7319 0.2270 24 14 3.4460 -5.7196 2.8833 25 1 2.0032 -6.0680 2.9281 26 1 4.2580 -6.9472 3.0804 27 1 3.7534 -4.7446 3.9603 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8518 0.5719 0.8436 34 1 3.9787 2.1767 0.0841 35 1 3.5268 2.2129 -2.4585 36 1 4.1201 0.7792 -3.3307 37 1 5.8044 2.4608 -1.4219 38 1 5.8228 2.6247 -3.1942 39 1 7.5580 3.2794 -2.2327 40 1 9.9499 3.8547 -2.1482 41 1 10.9607 -0.2761 -2.5165 42 1 8.5699 -0.8566 -2.5938 43 1 3.6121 -1.1232 0.6022 44 1 3.4211 -3.4034 -1.0536 45 1 5.1181 -3.2159 -0.5504 46 1 4.3020 -6.6912 0.3528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426438827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = -120.640100 kcal Electronic energy + Delta-G solvation = -29943.496154 eV Core-core repulsion = 25556.009149 eV Total energy + Delta-G solvation = -4387.487006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.88793 -40.22360 -39.41505 -37.61729 -37.27503 -35.17478 -33.99886 -32.27710 -31.43799 -30.86454 -29.36141 -28.58137 -26.79692 -26.16089 -24.17177 -22.96446 -22.85194 -22.28153 -21.40425 -18.97215 -18.48026 -17.99382 -17.42236 -16.76308 -16.64497 -16.20166 -15.94563 -15.64407 -15.49669 -15.24478 -15.03020 -14.84397 -14.49496 -14.35222 -13.98410 -13.70341 -13.48162 -13.22673 -12.96802 -12.85568 -12.67069 -12.45655 -12.27026 -12.23439 -11.91580 -11.71998 -11.52844 -11.44087 -11.08194 -10.90621 -10.84250 -10.80149 -10.76270 -10.17223 -9.59917 -9.30279 -9.22541 -9.12463 -8.58685 -8.36687 -8.12697 -7.50249 -6.03919 -4.08601 1.04753 1.14965 3.11102 3.25139 3.30927 3.36974 3.39956 3.49383 3.83986 4.16552 4.21983 4.40586 4.54169 4.64506 4.83223 4.87301 4.90776 4.96427 5.06254 5.09069 5.16243 5.23401 5.25626 5.31355 5.32738 5.34957 5.43059 5.45011 5.56065 5.78406 5.82559 5.84226 5.92073 5.97243 6.12044 6.17359 6.61124 6.81664 7.23207 7.30083 7.41231 7.66768 7.74696 7.76198 8.01267 8.16932 8.92361 9.13100 9.50305 9.68255 11.06558 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.003216 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.678357 B = 8703.026329 C =11003.263608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.039 3.961 4 C 0.113 3.887 5 N -0.633 5.633 6 C 0.135 3.865 7 C 0.040 3.960 8 O -0.282 6.282 9 C 0.131 3.869 10 C -0.189 4.189 11 C -0.115 4.115 12 C 0.048 3.952 13 F -0.146 7.146 14 C -0.111 4.111 15 C -0.120 4.120 16 C 0.706 3.294 17 O -0.592 6.592 18 N -0.718 5.718 19 C 0.270 3.730 20 C -0.533 4.533 21 H 0.060 0.940 22 C 0.062 3.938 23 N -0.887 5.887 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.387 0.613 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 22.048 -2.911 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.288 6.288 3 C -0.040 4.040 4 C -0.011 4.011 5 N -0.372 5.372 6 C 0.011 3.989 7 C -0.037 4.037 8 O -0.194 6.194 9 C 0.084 3.916 10 C -0.208 4.208 11 C -0.133 4.133 12 C 0.029 3.971 13 F -0.124 7.124 14 C -0.130 4.130 15 C -0.139 4.139 16 C 0.407 3.593 17 O -0.471 6.471 18 N -0.371 5.371 19 C 0.149 3.851 20 C -0.572 4.572 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.525 5.525 24 Si 0.728 3.272 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.221 0.779 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.979 21.034 -3.730 21.454 hybrid contribution -0.412 0.389 1.403 1.514 sum 1.567 21.424 -2.327 21.607 Atomic orbital electron populations 1.22696 0.81357 1.03022 0.98996 1.88097 1.19322 1.26222 1.95152 1.23064 0.94861 0.86097 0.99931 1.21491 0.92040 0.99294 0.88314 1.47003 1.73206 1.05880 1.11149 1.21217 0.91605 0.95278 0.90826 1.23435 0.90132 0.89235 1.00897 1.86427 1.11727 1.34379 1.86855 1.19174 0.84673 0.92719 0.95000 1.21084 0.96322 0.95499 1.07911 1.20857 0.92128 0.99120 1.01243 1.17554 0.77860 0.93740 1.07983 1.91470 1.32881 1.93619 1.94473 1.20984 0.96412 0.94914 1.00644 1.20453 0.90238 1.00056 1.03146 1.15904 0.78431 0.80111 0.84855 1.90858 1.54406 1.71524 1.30268 1.45687 1.70242 1.09687 1.11467 1.18882 0.96819 0.72492 0.96913 1.21231 1.46804 0.92426 0.96694 0.92153 1.24918 0.95109 0.96955 0.97060 1.69983 1.46505 1.04995 1.31042 0.86469 0.78274 0.78729 0.83705 1.20619 1.21139 1.19861 0.89414 0.94546 0.94688 0.92834 0.93434 0.89574 0.89530 0.89341 0.88287 0.92159 0.91486 0.84755 0.84845 0.84145 0.83694 0.77877 0.96065 0.96082 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -5.49 9.20 -35.23 -0.32 -5.81 16 3 C 0.04 0.42 6.28 37.16 0.23 0.65 16 4 C 0.11 1.28 5.72 -4.04 -0.02 1.26 16 5 N -0.63 -9.55 2.40 -179.43 -0.43 -9.99 16 6 C 0.14 1.61 5.88 -4.05 -0.02 1.58 16 7 C 0.04 0.43 5.08 37.15 0.19 0.62 16 8 O -0.28 -4.31 9.67 -19.57 -0.19 -4.50 16 9 C 0.13 1.78 6.69 -39.23 -0.26 1.52 16 10 C -0.19 -2.03 9.04 -39.44 -0.36 -2.39 16 11 C -0.11 -1.20 10.02 -39.53 -0.40 -1.60 16 12 C 0.05 0.57 7.30 -39.42 -0.29 0.28 16 13 F -0.15 -1.79 17.27 2.25 0.04 -1.75 16 14 C -0.11 -1.33 10.02 -39.53 -0.40 -1.73 16 15 C -0.12 -1.65 9.99 -39.44 -0.39 -2.04 16 16 C 0.71 15.09 7.70 -86.93 -0.67 14.42 16 17 O -0.59 -15.08 15.65 5.28 0.08 -15.00 16 18 N -0.72 -16.31 4.94 -66.41 -0.33 -16.63 16 19 C 0.27 7.53 5.43 -5.20 -0.03 7.50 16 20 C -0.53 -14.98 9.28 -34.44 -0.32 -15.30 16 21 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 24 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.10 6.24 -51.93 -0.32 0.77 16 34 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 35 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.10 1.44 7.26 -51.93 -0.38 1.06 16 37 H 0.06 0.54 7.61 -51.93 -0.40 0.15 16 38 H 0.07 0.53 7.65 -51.93 -0.40 0.14 16 39 H 0.13 1.09 6.30 -52.48 -0.33 0.76 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.39 7.93 5.40 -40.82 -0.22 7.71 16 44 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -36.20 391.81 -7.89 -44.09 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.64 Total: 5.40 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.72 Total: 7.98 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.02 Total: -52.67 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.43 Total: -25.31 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.20 -7.89 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.550 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds