Wall clock time and date at job start Sat Apr 11 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00234 * 2 1 4 4 C 1.52998 * 109.46657 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47614 * 64.73881 * 4 3 2 6 6 C 1.46497 * 120.00102 * 87.58559 * 5 4 3 7 7 C 1.52994 * 109.46881 * 84.57880 * 6 5 4 8 8 O 1.42904 * 109.47227 * 65.34193 * 7 6 5 9 9 C 1.35946 * 117.00033 * 179.97438 * 8 7 6 10 10 C 1.38710 * 120.03379 * 359.72261 * 9 8 7 11 11 C 1.38147 * 119.97460 * 179.78906 * 10 9 8 12 12 C 1.38460 * 120.02654 * 0.49015 * 11 10 9 13 13 F 1.35102 * 119.96901 * 179.72269 * 12 11 10 14 14 C 1.38454 * 120.05961 * 359.74389 * 12 11 10 15 15 C 1.38152 * 120.03292 * 0.02562 * 14 12 11 16 16 C 1.34771 * 119.99502 * 267.59318 * 5 4 3 17 17 O 1.21596 * 119.99804 * 179.97438 * 16 5 4 18 18 N 1.34772 * 120.00457 * 359.97438 * 16 5 4 19 19 C 1.46501 * 120.00585 * 180.02562 * 18 16 5 20 20 C 1.50694 * 109.47760 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99660 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00334 * 180.02562 * 20 19 18 23 23 N 1.31508 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00187 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47343 * 89.99512 * 24 22 20 26 26 H 1.48501 * 109.47404 * 209.99771 * 24 22 20 27 27 H 1.48502 * 109.46799 * 329.99518 * 24 22 20 28 28 H 1.08993 * 109.47380 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46745 * 300.00092 * 1 2 3 30 30 H 1.09002 * 109.46786 * 59.99231 * 1 2 3 31 31 H 1.08999 * 109.47140 * 60.00353 * 3 2 1 32 32 H 1.08995 * 109.47165 * 300.00038 * 3 2 1 33 33 H 1.08994 * 109.47410 * 304.72907 * 4 3 2 34 34 H 1.09004 * 109.46984 * 184.73226 * 4 3 2 35 35 H 1.08994 * 109.47512 * 324.58007 * 6 5 4 36 36 H 1.09003 * 109.46955 * 204.57329 * 6 5 4 37 37 H 1.09004 * 109.47547 * 305.34001 * 7 6 5 38 38 H 1.09007 * 109.47361 * 185.34043 * 7 6 5 39 39 H 1.08008 * 120.00830 * 0.02562 * 10 9 8 40 40 H 1.07991 * 119.98805 * 180.20791 * 11 10 9 41 41 H 1.08001 * 119.98528 * 180.02562 * 14 12 11 42 42 H 1.07998 * 120.01406 * 179.97438 * 15 14 12 43 43 H 0.97005 * 120.00168 * 359.97438 * 18 16 5 44 44 H 1.09005 * 109.46644 * 300.00087 * 19 18 16 45 45 H 1.09004 * 109.47373 * 59.99215 * 19 18 16 46 46 H 0.96999 * 120.00068 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9753 0.5584 -1.2500 6 6 4.2348 1.3847 -2.4316 7 6 5.6609 1.9349 -2.3658 8 8 6.5927 0.8552 -2.4560 9 6 7.9134 1.1746 -2.4133 10 6 8.3036 2.5002 -2.2929 11 6 9.6460 2.8230 -2.2452 12 6 10.6019 1.8248 -2.3277 13 9 11.9145 2.1423 -2.2865 14 6 10.2140 0.5016 -2.4527 15 6 8.8722 0.1756 -2.4959 16 6 4.1410 -0.7776 -1.3124 17 8 4.5056 -1.2973 -2.3495 18 7 3.9026 -1.5377 -0.2253 19 6 4.0833 -2.9900 -0.2928 20 6 3.7545 -3.6000 1.0453 21 1 3.4426 -2.9690 1.8644 22 6 3.8529 -4.9635 1.2243 23 7 4.2332 -5.7319 0.2270 24 14 3.4460 -5.7196 2.8833 25 1 2.0032 -6.0680 2.9281 26 1 4.2580 -6.9472 3.0804 27 1 3.7534 -4.7446 3.9603 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8518 0.5719 0.8436 34 1 3.9787 2.1767 0.0841 35 1 3.5268 2.2129 -2.4585 36 1 4.1201 0.7792 -3.3307 37 1 5.8044 2.4608 -1.4219 38 1 5.8228 2.6247 -3.1942 39 1 7.5580 3.2794 -2.2327 40 1 9.9499 3.8547 -2.1482 41 1 10.9607 -0.2761 -2.5165 42 1 8.5699 -0.8566 -2.5938 43 1 3.6121 -1.1232 0.6022 44 1 3.4211 -3.4034 -1.0536 45 1 5.1181 -3.2159 -0.5504 46 1 4.3020 -6.6912 0.3528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426438827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:44 Heat of formation + Delta-G solvation = -146.052628 kcal Electronic energy + Delta-G solvation = -29944.598124 eV Core-core repulsion = 25556.009149 eV Total energy + Delta-G solvation = -4388.588975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.82525 -41.31122 -40.73839 -38.69840 -38.27936 -36.51686 -35.97473 -34.27545 -32.38937 -31.86898 -30.36792 -29.85114 -28.60451 -27.11871 -25.35857 -24.41953 -23.85011 -23.51894 -22.61052 -20.61677 -19.52689 -19.31064 -18.38097 -18.00246 -17.80141 -17.59910 -17.10481 -16.85839 -16.66737 -16.48313 -16.24362 -16.09543 -15.72935 -15.53329 -15.23126 -14.87982 -14.81926 -14.61905 -14.11082 -14.08618 -13.93403 -13.60875 -13.55941 -13.37230 -13.11886 -13.06034 -12.83748 -12.68553 -12.63114 -12.48137 -12.19612 -11.98146 -11.78418 -11.65228 -11.42344 -10.91959 -10.75181 -10.48815 -10.20268 -9.86241 -9.27831 -9.08025 -8.24455 -6.40146 0.15004 0.20674 1.42379 1.46076 1.56979 1.90912 2.28594 2.40876 2.50323 2.56626 3.03569 3.09925 3.30842 3.37775 3.68159 3.80966 4.01430 4.09138 4.12643 4.19211 4.24970 4.32196 4.39165 4.39918 4.51612 4.55177 4.59049 4.63971 4.72379 4.86520 4.88678 4.92505 4.99043 5.09139 5.14189 5.14500 5.24826 5.34512 5.54380 5.69599 5.75966 5.85575 5.95696 6.21765 6.41963 6.52494 6.71949 7.29221 7.39865 7.94628 8.88230 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.003216 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.678357 B = 8703.026329 C =11003.263608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.416 6.416 3 C 0.037 3.963 4 C 0.106 3.894 5 N -0.622 5.622 6 C 0.129 3.871 7 C 0.033 3.967 8 O -0.325 6.325 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.104 4.104 12 C 0.036 3.964 13 F -0.148 7.148 14 C -0.113 4.113 15 C -0.151 4.151 16 C 0.701 3.299 17 O -0.645 6.645 18 N -0.716 5.716 19 C 0.294 3.706 20 C -0.547 4.547 21 H 0.077 0.923 22 C 0.003 3.997 23 N -0.932 5.932 24 Si 0.985 3.015 25 H -0.270 1.270 26 H -0.283 1.283 27 H -0.256 1.256 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.118 0.882 43 H 0.399 0.601 44 H -0.024 1.024 45 H -0.023 1.023 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 26.198 -0.716 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.336 6.336 3 C -0.041 4.041 4 C -0.017 4.017 5 N -0.359 5.359 6 C 0.006 3.994 7 C -0.042 4.042 8 O -0.239 6.239 9 C 0.068 3.932 10 C -0.194 4.194 11 C -0.122 4.122 12 C 0.017 3.983 13 F -0.127 7.127 14 C -0.132 4.132 15 C -0.170 4.170 16 C 0.402 3.598 17 O -0.527 6.527 18 N -0.370 5.370 19 C 0.170 3.830 20 C -0.585 4.585 21 H 0.095 0.905 22 C -0.196 4.196 23 N -0.571 5.571 24 Si 0.807 3.193 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.180 1.180 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.189 0.811 40 H 0.184 0.816 41 H 0.167 0.833 42 H 0.136 0.864 43 H 0.236 0.764 44 H -0.006 1.006 45 H -0.005 1.005 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.115 25.293 -1.517 25.363 hybrid contribution -0.148 -0.802 0.637 1.034 sum 0.968 24.492 -0.880 24.527 Atomic orbital electron populations 1.22744 0.80261 1.02416 1.00763 1.88038 1.20861 1.29123 1.95542 1.23249 0.93706 0.84855 1.02276 1.21909 0.93212 1.01047 0.85519 1.46960 1.71669 1.03528 1.13717 1.21601 0.94240 0.95596 0.87919 1.23713 0.88086 0.88684 1.03725 1.86396 1.12907 1.37233 1.87336 1.19371 0.84086 0.93957 0.95782 1.21378 0.97216 0.94690 1.06122 1.21239 0.91573 1.00258 0.99179 1.17731 0.78150 0.93946 1.08498 1.91464 1.33124 1.93565 1.94552 1.21053 0.95872 0.95875 1.00410 1.20422 0.91546 0.99416 1.05657 1.16142 0.77822 0.82349 0.83446 1.90818 1.56427 1.73466 1.31979 1.45285 1.71107 1.07791 1.12803 1.18228 0.92963 0.75731 0.96075 1.21539 1.47022 0.93191 0.96770 0.90470 1.26056 0.94367 0.97427 1.01726 1.70157 1.47438 1.05522 1.33983 0.85168 0.78277 0.77747 0.78059 1.19530 1.20836 1.17962 0.91378 0.92178 0.93391 0.89655 0.91657 0.91333 0.84295 0.83882 0.91925 0.89384 0.88070 0.81145 0.81551 0.83281 0.86368 0.76380 1.00604 1.00519 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.42 -11.87 9.20 -148.98 -1.37 -13.24 16 3 C 0.04 0.65 6.28 71.98 0.45 1.10 16 4 C 0.11 2.06 5.72 86.38 0.49 2.56 16 5 N -0.62 -18.09 2.40 -839.86 -2.02 -20.11 16 6 C 0.13 2.80 5.88 86.38 0.51 3.30 16 7 C 0.03 0.62 5.08 71.98 0.37 0.98 16 8 O -0.33 -10.03 9.67 -92.94 -0.90 -10.93 16 9 C 0.11 3.10 6.69 22.50 0.15 3.25 16 10 C -0.18 -3.25 9.04 22.36 0.20 -3.05 16 11 C -0.10 -1.87 10.02 22.30 0.22 -1.64 16 12 C 0.04 0.82 7.30 22.37 0.16 0.98 16 13 F -0.15 -3.46 17.27 44.97 0.78 -2.68 16 14 C -0.11 -2.84 10.02 22.30 0.22 -2.61 16 15 C -0.15 -4.48 9.99 22.36 0.22 -4.26 16 16 C 0.70 31.37 7.70 179.06 1.38 32.75 16 17 O -0.64 -35.41 15.65 -4.02 -0.06 -35.47 16 18 N -0.72 -34.16 4.94 -482.29 -2.38 -36.54 16 19 C 0.29 17.58 5.43 85.63 0.46 18.05 16 20 C -0.55 -31.76 9.28 25.60 0.24 -31.52 16 21 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 22 C 0.00 0.19 5.46 84.65 0.46 0.66 16 23 N -0.93 -58.72 13.29 21.44 0.28 -58.43 16 24 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.61 6.24 -2.39 -0.01 1.60 16 34 H 0.14 1.29 8.03 -2.39 -0.02 1.28 16 35 H 0.14 1.52 8.11 -2.39 -0.02 1.50 16 36 H 0.06 1.85 7.26 -2.39 -0.02 1.83 16 37 H 0.09 1.13 7.61 -2.38 -0.02 1.11 16 38 H 0.10 1.17 7.65 -2.38 -0.02 1.15 16 39 H 0.17 1.84 6.30 -2.91 -0.02 1.82 16 40 H 0.17 1.89 8.06 -2.92 -0.02 1.87 16 41 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 42 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 43 H 0.40 16.75 5.40 -92.70 -0.50 16.25 16 44 H -0.02 -1.62 8.14 -2.38 -0.02 -1.64 16 45 H -0.02 -1.56 8.14 -2.38 -0.02 -1.58 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -88.15 391.81 3.65 -84.50 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.50 Total: 24.22 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 6.80 Total: 22.55 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -4.11 Total: -115.08 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -2.33 Total: -59.65 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -88.15 3.65 -84.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.557 kcal (2) G-P(sol) polarization free energy of solvation -88.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds