Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99844 * 2 1 4 4 C 1.53503 * 114.20437 * 150.00082 * 3 2 1 5 5 N 1.47062 * 87.98390 * 139.84857 * 4 3 2 6 6 C 1.34783 * 136.05958 * 152.84262 * 5 4 3 7 7 O 1.21784 * 119.99564 * 0.02562 * 6 5 4 8 8 C 1.41491 * 120.00373 * 180.02562 * 6 5 4 9 9 C 1.35451 * 120.00256 * 186.51828 * 8 6 5 10 10 C 1.46386 * 119.99629 * 10.06857 * 9 8 6 11 11 C 1.36665 * 126.78724 * 45.50500 * 10 9 8 12 12 N 1.35613 * 109.69278 * 179.46525 * 11 10 9 13 13 C 1.46502 * 124.78013 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46949 * 265.81224 * 13 12 11 15 15 H 1.08001 * 119.99829 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99456 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00259 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47433 * 59.99952 * 18 16 14 20 20 H 1.48504 * 109.47323 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47293 * 299.99745 * 18 16 14 22 22 C 1.37995 * 110.43788 * 0.62532 * 12 11 10 23 23 C 1.39117 * 133.13086 * 179.26958 * 22 12 11 24 24 C 1.37780 * 119.93404 * 180.02562 * 23 22 12 25 25 C 1.38736 * 120.62742 * 0.02562 * 24 23 22 26 26 C 1.37780 * 120.29640 * 0.02562 * 25 24 23 27 27 C 1.39240 * 119.67699 * 0.25293 * 26 25 24 28 28 C 1.47072 * 87.88741 * 333.10160 * 5 4 3 29 29 H 1.08994 * 109.47178 * 60.00040 * 1 2 3 30 30 H 1.08998 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47043 * 299.99747 * 1 2 3 32 32 H 1.08997 * 113.28360 * 16.93426 * 3 2 1 33 33 H 1.08994 * 113.46935 * 25.06748 * 4 3 2 34 34 H 1.08995 * 113.46420 * 254.62842 * 4 3 2 35 35 H 1.08001 * 119.99657 * 6.51856 * 8 6 5 36 36 H 1.07999 * 120.00183 * 190.05914 * 9 8 6 37 37 H 1.07996 * 125.15082 * 359.97438 * 11 10 9 38 38 H 1.08997 * 109.46916 * 25.80660 * 13 12 11 39 39 H 1.08999 * 109.47303 * 145.81109 * 13 12 11 40 40 H 0.97006 * 119.99424 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.03505 * 0.02562 * 23 22 12 42 42 H 1.07994 * 119.68288 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.85138 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.16179 * 179.97438 * 26 25 24 45 45 H 1.09000 * 113.46836 * 141.68404 * 28 5 4 46 46 H 1.09002 * 113.46411 * 272.11699 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3739 1.3873 0.7000 5 7 3.8131 2.2901 -0.3746 6 6 4.7153 3.2837 -0.4993 7 8 5.4017 3.6059 0.4537 8 6 4.8648 3.9523 -1.7372 9 6 5.8585 4.8579 -1.9022 10 6 6.9067 4.9870 -0.8886 11 6 7.5871 3.9695 -0.2807 12 7 8.4892 4.4810 0.5932 13 6 9.3945 3.6822 1.4230 14 6 8.7696 3.4583 2.7760 15 1 7.7958 3.8702 2.9958 16 6 9.4411 2.7276 3.7332 17 7 10.6268 2.2257 3.4652 18 14 8.6669 2.4507 5.4104 19 1 7.3783 1.7306 5.2480 20 1 9.5845 1.6409 6.2516 21 1 8.4226 3.7610 6.0653 22 6 8.4241 5.8594 0.6013 23 6 9.1089 6.8397 1.3123 24 6 8.8193 8.1702 1.1020 25 6 7.8477 8.5458 0.1857 26 6 7.1580 7.5896 -0.5273 27 6 7.4365 6.2411 -0.3205 28 6 2.8302 1.6361 -1.2516 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3105 2.0886 0.2916 33 1 3.9108 0.4389 0.7168 34 1 3.3314 1.8655 1.6785 35 1 4.1866 3.7405 -2.5506 36 1 5.8775 5.4846 -2.7815 37 1 7.4356 2.9177 -0.4736 38 1 9.5745 2.7206 0.9424 39 1 10.3399 4.2114 1.5425 40 1 11.0991 1.7113 4.1386 41 1 9.8669 6.5581 2.0283 42 1 9.3536 8.9278 1.6559 43 1 7.6304 9.5923 0.0311 44 1 6.4017 7.8844 -1.2398 45 1 2.3266 2.3255 -1.9292 46 1 3.2209 0.7546 -1.7600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491841378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 56.852543 kcal Electronic energy + Delta-G solvation = -28994.663558 eV Core-core repulsion = 25045.642436 eV Total energy + Delta-G solvation = -3949.021122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73474 -40.31679 -38.39301 -36.59347 -36.27588 -33.91969 -32.85769 -31.06066 -29.56177 -29.43807 -28.01808 -26.92458 -26.41178 -26.01161 -23.72274 -22.82516 -21.97895 -21.19892 -20.55743 -19.32797 -18.11646 -17.31564 -17.13213 -16.63492 -16.13393 -15.86186 -15.47515 -15.29387 -14.94547 -14.65167 -14.41949 -14.26780 -14.04237 -13.48856 -13.31553 -13.16399 -13.03945 -12.82624 -12.69797 -12.33287 -12.25264 -12.05649 -11.87843 -11.58123 -11.49863 -11.34397 -11.17746 -11.08462 -10.77173 -10.75977 -10.39267 -10.08334 -9.92630 -9.77486 -9.31365 -9.23057 -8.62906 -8.59906 -8.49832 -7.38247 -6.60145 -6.19097 -4.28555 1.26285 1.91329 2.34269 2.87491 3.27138 3.29496 3.34473 3.47089 3.61517 3.86797 3.93503 4.11432 4.34697 4.58283 4.60070 4.77103 4.99382 5.04711 5.11915 5.17363 5.21933 5.31622 5.34751 5.35720 5.42231 5.53853 5.57055 5.59914 5.66729 5.71704 5.80362 5.92669 6.09585 6.21871 6.33026 6.45385 6.51926 6.66733 6.72547 6.84820 6.91443 7.00126 7.11398 7.19011 7.46014 7.56526 7.74032 7.92436 7.93407 8.12462 8.19598 8.61249 8.80947 9.38350 10.85634 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.003968 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.104327 B = 7054.886723 C = 9729.425290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.046 3.954 4 C 0.105 3.895 5 N -0.648 5.648 6 C 0.577 3.423 7 O -0.507 6.507 8 C -0.272 4.272 9 C 0.073 3.927 10 C -0.234 4.234 11 C 0.176 3.824 12 N -0.439 5.439 13 C 0.234 3.766 14 C -0.534 4.534 15 H 0.067 0.933 16 C 0.065 3.935 17 N -0.895 5.895 18 Si 0.904 3.096 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.095 3.905 23 C -0.102 4.102 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.094 4.094 27 C -0.076 4.076 28 C 0.087 3.913 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.267 0.733 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.156 1.205 -11.878 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.013 4.013 4 C -0.019 4.019 5 N -0.388 5.388 6 C 0.371 3.629 7 O -0.382 6.382 8 C -0.294 4.294 9 C 0.052 3.948 10 C -0.241 4.241 11 C 0.040 3.960 12 N -0.114 5.114 13 C 0.116 3.884 14 C -0.572 4.572 15 H 0.085 0.915 16 C -0.138 4.138 17 N -0.533 5.533 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.012 4.012 23 C -0.122 4.122 24 C -0.148 4.148 25 C -0.169 4.169 26 C -0.113 4.113 27 C -0.080 4.080 28 C -0.037 4.037 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.171 0.829 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.095 0.905 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.061 1.083 -11.056 18.715 hybrid contribution -0.724 -0.296 0.952 1.232 sum -15.785 0.787 -10.104 18.758 Atomic orbital electron populations 1.22833 0.80705 1.02967 1.00170 1.87938 1.20033 1.26433 1.94418 1.23991 0.94340 0.85778 0.97180 1.23049 0.90967 0.94263 0.93601 1.49331 1.39945 1.34376 1.15162 1.16798 0.77870 0.78210 0.89986 1.91092 1.42522 1.63375 1.41258 1.21573 1.03849 1.06325 0.97619 1.21617 0.88335 0.90533 0.94270 1.18556 1.05822 0.91286 1.08404 1.21737 0.88630 0.97480 0.88184 1.44605 1.30652 1.04418 1.31675 1.19748 0.88340 0.90572 0.89773 1.21346 1.04685 1.34430 0.96711 0.91478 1.24924 0.94745 0.94954 0.99148 1.69921 1.12961 1.35125 1.35277 0.86438 0.79117 0.78506 0.82797 1.19949 1.21029 1.19945 1.18212 0.99290 0.83885 0.99769 1.20172 1.00835 0.91263 0.99940 1.20599 0.99548 0.94642 0.99970 1.20685 0.98830 0.98222 0.99138 1.20210 1.00020 0.90771 1.00281 1.18906 0.97604 0.92381 0.99106 1.23356 0.88300 0.97122 0.94965 0.93821 0.89462 0.93768 0.88072 0.89183 0.89995 0.86331 0.85884 0.82905 0.93618 0.93676 0.92339 0.86163 0.86670 0.87029 0.87188 0.90499 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.62 10.76 -35.23 -0.38 -4.00 16 3 C 0.05 0.45 4.65 -26.35 -0.12 0.32 16 4 C 0.10 1.35 8.46 -8.50 -0.07 1.28 16 5 N -0.65 -9.07 3.69 -188.89 -0.70 -9.76 16 6 C 0.58 9.87 7.38 -15.02 -0.11 9.76 16 7 O -0.51 -11.23 12.82 5.11 0.07 -11.16 16 8 C -0.27 -3.82 9.67 -39.34 -0.38 -4.21 16 9 C 0.07 1.09 10.17 -37.30 -0.38 0.71 16 10 C -0.23 -4.51 4.76 -103.41 -0.49 -5.00 16 11 C 0.18 3.78 8.20 -16.45 -0.13 3.64 16 12 N -0.44 -10.36 2.73 -115.37 -0.32 -10.68 16 13 C 0.23 6.08 5.70 -5.19 -0.03 6.05 16 14 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 15 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 18 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.09 2.13 6.79 -83.95 -0.57 1.56 16 23 C -0.10 -2.11 9.97 -39.42 -0.39 -2.50 16 24 C -0.13 -2.23 10.01 -39.56 -0.40 -2.62 16 25 C -0.15 -2.43 10.03 -39.56 -0.40 -2.83 16 26 C -0.09 -1.63 10.09 -39.38 -0.40 -2.03 16 27 C -0.08 -1.54 6.36 -104.93 -0.67 -2.20 16 28 C 0.09 0.84 8.07 -8.63 -0.07 0.77 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.85 7.88 -51.93 -0.41 0.44 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.12 1.26 7.89 -52.49 -0.41 0.84 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.15 3.16 7.67 -52.49 -0.40 2.75 16 38 H 0.05 1.21 8.11 -51.93 -0.42 0.79 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 42 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -33.74 393.26 -10.31 -44.05 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.69 Total: 3.50 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.94 Total: -9.85 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.28 Total: -45.50 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.31 Total: -15.16 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.74 -10.31 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491841378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.899 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds