Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99844 * 2 1 4 4 C 1.53503 * 114.20437 * 150.00082 * 3 2 1 5 5 N 1.47062 * 87.98390 * 139.84857 * 4 3 2 6 6 C 1.34783 * 136.05958 * 152.84262 * 5 4 3 7 7 O 1.21784 * 119.99564 * 0.02562 * 6 5 4 8 8 C 1.41491 * 120.00373 * 180.02562 * 6 5 4 9 9 C 1.35451 * 120.00256 * 186.51828 * 8 6 5 10 10 C 1.46386 * 119.99629 * 10.06857 * 9 8 6 11 11 C 1.36665 * 126.78724 * 45.50500 * 10 9 8 12 12 N 1.35613 * 109.69278 * 179.46525 * 11 10 9 13 13 C 1.46502 * 124.78013 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46949 * 265.81224 * 13 12 11 15 15 H 1.08001 * 119.99829 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99456 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00259 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47433 * 59.99952 * 18 16 14 20 20 H 1.48504 * 109.47323 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47293 * 299.99745 * 18 16 14 22 22 C 1.37995 * 110.43788 * 0.62532 * 12 11 10 23 23 C 1.39117 * 133.13086 * 179.26958 * 22 12 11 24 24 C 1.37780 * 119.93404 * 180.02562 * 23 22 12 25 25 C 1.38736 * 120.62742 * 0.02562 * 24 23 22 26 26 C 1.37780 * 120.29640 * 0.02562 * 25 24 23 27 27 C 1.39240 * 119.67699 * 0.25293 * 26 25 24 28 28 C 1.47072 * 87.88741 * 333.10160 * 5 4 3 29 29 H 1.08994 * 109.47178 * 60.00040 * 1 2 3 30 30 H 1.08998 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47043 * 299.99747 * 1 2 3 32 32 H 1.08997 * 113.28360 * 16.93426 * 3 2 1 33 33 H 1.08994 * 113.46935 * 25.06748 * 4 3 2 34 34 H 1.08995 * 113.46420 * 254.62842 * 4 3 2 35 35 H 1.08001 * 119.99657 * 6.51856 * 8 6 5 36 36 H 1.07999 * 120.00183 * 190.05914 * 9 8 6 37 37 H 1.07996 * 125.15082 * 359.97438 * 11 10 9 38 38 H 1.08997 * 109.46916 * 25.80660 * 13 12 11 39 39 H 1.08999 * 109.47303 * 145.81109 * 13 12 11 40 40 H 0.97006 * 119.99424 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.03505 * 0.02562 * 23 22 12 42 42 H 1.07994 * 119.68288 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.85138 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.16179 * 179.97438 * 26 25 24 45 45 H 1.09000 * 113.46836 * 141.68404 * 28 5 4 46 46 H 1.09002 * 113.46411 * 272.11699 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3739 1.3873 0.7000 5 7 3.8131 2.2901 -0.3746 6 6 4.7153 3.2837 -0.4993 7 8 5.4017 3.6059 0.4537 8 6 4.8648 3.9523 -1.7372 9 6 5.8585 4.8579 -1.9022 10 6 6.9067 4.9870 -0.8886 11 6 7.5871 3.9695 -0.2807 12 7 8.4892 4.4810 0.5932 13 6 9.3945 3.6822 1.4230 14 6 8.7696 3.4583 2.7760 15 1 7.7958 3.8702 2.9958 16 6 9.4411 2.7276 3.7332 17 7 10.6268 2.2257 3.4652 18 14 8.6669 2.4507 5.4104 19 1 7.3783 1.7306 5.2480 20 1 9.5845 1.6409 6.2516 21 1 8.4226 3.7610 6.0653 22 6 8.4241 5.8594 0.6013 23 6 9.1089 6.8397 1.3123 24 6 8.8193 8.1702 1.1020 25 6 7.8477 8.5458 0.1857 26 6 7.1580 7.5896 -0.5273 27 6 7.4365 6.2411 -0.3205 28 6 2.8302 1.6361 -1.2516 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3105 2.0886 0.2916 33 1 3.9108 0.4389 0.7168 34 1 3.3314 1.8655 1.6785 35 1 4.1866 3.7405 -2.5506 36 1 5.8775 5.4846 -2.7815 37 1 7.4356 2.9177 -0.4736 38 1 9.5745 2.7206 0.9424 39 1 10.3399 4.2114 1.5425 40 1 11.0991 1.7113 4.1386 41 1 9.8669 6.5581 2.0283 42 1 9.3536 8.9278 1.6559 43 1 7.6304 9.5923 0.0311 44 1 6.4017 7.8844 -1.2398 45 1 2.3266 2.3255 -1.9292 46 1 3.2209 0.7546 -1.7600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491841378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 36.373158 kcal Electronic energy + Delta-G solvation = -28995.551611 eV Core-core repulsion = 25045.642436 eV Total energy + Delta-G solvation = -3949.909175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18593 -41.42042 -39.53289 -37.86591 -37.37226 -35.66498 -34.62766 -32.57768 -31.12625 -30.62813 -29.55819 -28.24274 -27.29648 -27.08830 -25.39194 -24.25595 -23.38043 -22.38107 -22.02793 -20.66812 -19.27660 -18.86520 -18.41670 -18.09085 -17.57069 -17.29797 -16.72570 -16.27305 -16.22180 -16.14874 -15.63366 -15.55417 -15.43402 -14.84036 -14.75584 -14.60062 -14.26537 -14.20096 -13.98696 -13.68881 -13.54423 -13.40875 -13.23738 -13.04809 -12.94182 -12.76435 -12.48112 -12.45626 -12.29575 -12.25313 -12.09436 -11.76325 -11.57816 -10.97614 -10.82804 -10.60346 -10.48313 -9.98828 -9.64860 -8.93158 -8.46695 -8.00778 -6.57736 -0.01130 0.50727 0.89733 1.26277 1.28995 1.38307 1.87061 2.02116 2.24095 2.33538 2.49892 2.87718 2.92838 3.13046 3.27430 3.74518 3.89131 3.92519 3.97808 4.07314 4.20460 4.30830 4.41722 4.42833 4.47504 4.50748 4.57088 4.59231 4.64223 4.66861 4.73817 4.77554 4.80538 4.86304 4.90778 4.93082 4.96067 5.08048 5.19820 5.41418 5.47532 5.60093 5.72572 5.76030 5.78452 6.03601 6.15038 6.19066 6.36623 6.54119 6.64894 6.81284 7.13621 7.35713 8.65319 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.003968 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.104327 B = 7054.886723 C = 9729.425290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.068 3.932 4 C 0.085 3.915 5 N -0.653 5.653 6 C 0.561 3.439 7 O -0.572 6.572 8 C -0.249 4.249 9 C 0.060 3.940 10 C -0.210 4.210 11 C 0.136 3.864 12 N -0.462 5.462 13 C 0.254 3.746 14 C -0.551 4.551 15 H 0.040 0.960 16 C 0.022 3.978 17 N -0.918 5.918 18 Si 0.967 3.033 19 H -0.276 1.276 20 H -0.264 1.264 21 H -0.271 1.271 22 C 0.058 3.942 23 C -0.142 4.142 24 C -0.114 4.114 25 C -0.144 4.144 26 C -0.087 4.087 27 C -0.099 4.099 28 C 0.092 3.908 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.141 0.859 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.274 0.726 41 H 0.097 0.903 42 H 0.146 0.854 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.112 0.888 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.594 2.982 -14.032 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C 0.009 3.991 4 C -0.039 4.039 5 N -0.390 5.390 6 C 0.357 3.643 7 O -0.453 6.453 8 C -0.269 4.269 9 C 0.040 3.960 10 C -0.217 4.217 11 C 0.003 3.997 12 N -0.139 5.139 13 C 0.134 3.866 14 C -0.589 4.589 15 H 0.058 0.942 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.196 1.196 22 C -0.048 4.048 23 C -0.163 4.163 24 C -0.134 4.134 25 C -0.163 4.163 26 C -0.105 4.105 27 C -0.103 4.103 28 C -0.030 4.030 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.159 0.841 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.164 0.836 43 H 0.176 0.824 44 H 0.167 0.833 45 H 0.130 0.870 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.560 2.822 -13.264 22.986 hybrid contribution 0.198 -0.864 1.592 1.822 sum -18.361 1.958 -11.673 21.845 Atomic orbital electron populations 1.23063 0.78739 1.04164 1.01354 1.87915 1.22159 1.26275 1.94422 1.23769 0.92916 0.86442 0.95959 1.23229 0.93896 0.93543 0.93199 1.49410 1.39408 1.33440 1.16771 1.17499 0.77557 0.78778 0.90500 1.91095 1.44980 1.65716 1.43464 1.21911 1.04030 1.03928 0.97075 1.22002 0.87383 0.91988 0.94644 1.19017 1.05081 0.90034 1.07525 1.21749 0.90288 0.97769 0.89904 1.44359 1.31617 1.05024 1.32900 1.19178 0.88226 0.89850 0.89333 1.21394 1.03837 1.35161 0.98483 0.94171 1.25725 0.95167 0.94281 1.02661 1.69998 1.13805 1.35225 1.36609 0.85484 0.78380 0.78637 0.78465 1.20105 1.18862 1.19576 1.18730 1.01117 0.83433 1.01499 1.20296 1.01899 0.92960 1.01104 1.21025 0.99246 0.93506 0.99575 1.21204 0.97235 1.00336 0.97488 1.20708 1.00167 0.89268 1.00344 1.19321 0.97628 0.94196 0.99190 1.23561 0.86787 0.97679 0.94965 0.91971 0.88390 0.93212 0.86284 0.90099 0.92139 0.81495 0.81090 0.84105 0.95519 0.95701 0.91709 0.88435 0.83643 0.82438 0.83276 0.86965 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 113.37 1.23 1.46 16 2 O -0.39 -6.86 10.76 -148.98 -1.60 -8.46 16 3 C 0.07 1.19 4.65 30.84 0.14 1.33 16 4 C 0.09 2.27 8.46 83.19 0.70 2.97 16 5 N -0.65 -17.83 3.69 -870.17 -3.21 -21.04 16 6 C 0.56 19.15 7.38 85.04 0.63 19.78 16 7 O -0.57 -26.81 12.82 -4.62 -0.06 -26.87 16 8 C -0.25 -6.27 9.67 22.43 0.22 -6.05 16 9 C 0.06 1.63 10.17 23.75 0.24 1.87 16 10 C -0.21 -8.20 4.76 -19.08 -0.09 -8.29 16 11 C 0.14 6.31 8.20 83.74 0.69 7.00 16 12 N -0.46 -23.94 2.73 -518.93 -1.42 -25.36 16 13 C 0.25 14.64 5.70 85.63 0.49 15.13 16 14 C -0.55 -34.10 9.39 25.60 0.24 -33.86 16 15 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 16 C 0.02 1.33 5.46 84.65 0.46 1.79 16 17 N -0.92 -55.37 13.29 21.45 0.28 -55.08 16 18 Si 0.97 47.01 29.54 68.60 2.03 49.04 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 22 C 0.06 2.76 6.79 38.91 0.26 3.03 16 23 C -0.14 -6.23 9.97 22.37 0.22 -6.00 16 24 C -0.11 -3.87 10.01 22.28 0.22 -3.64 16 25 C -0.14 -4.19 10.03 22.28 0.22 -3.97 16 26 C -0.09 -2.76 10.09 22.40 0.23 -2.53 16 27 C -0.10 -4.04 6.36 -20.07 -0.13 -4.17 16 28 C 0.09 1.51 8.07 83.09 0.67 2.18 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.12 1.66 7.88 -2.39 -0.02 1.64 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.17 2.57 7.89 -2.91 -0.02 2.55 16 36 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.14 6.52 7.67 -2.91 -0.02 6.50 16 38 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 39 H 0.02 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 41 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 44 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -82.38 393.26 3.64 -78.73 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.97 Total: 21.03 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 6.65 Total: -11.99 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -4.34 Total: -101.48 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.66 Total: -35.33 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -82.38 3.64 -78.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491841378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.105 kcal (2) G-P(sol) polarization free energy of solvation -82.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds