Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47594 * 119.99797 * 8 6 4 11 11 H 1.48499 * 109.47226 * 240.00455 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39669 * 120.00242 * 179.97438 * 17 16 13 19 19 C 1.38936 * 120.07666 * 359.72464 * 18 17 16 20 20 C 1.38081 * 119.92426 * 179.74345 * 19 18 17 21 21 C 1.38309 * 120.07376 * 0.53160 * 20 19 18 22 22 C 1.38264 * 120.15399 * 359.74061 * 21 20 19 23 23 C 1.50693 * 119.96561 * 179.97438 * 22 21 20 24 24 S 1.81400 * 109.47622 * 269.98096 * 23 22 21 25 25 C 1.81401 * 103.00072 * 180.02562 * 24 23 22 26 26 O 1.42101 * 109.46610 * 296.38828 * 24 23 22 27 27 C 1.38129 * 120.07089 * 359.97438 * 22 21 20 28 28 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 29 29 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 30 30 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 31 31 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 32 32 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 33 33 H 0.96993 * 120.00483 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 35 35 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 36 36 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 37 37 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 38 38 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 39 39 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 40 40 H 1.07999 * 120.03339 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.96536 * 180.24855 * 20 19 18 42 42 H 1.07998 * 119.92297 * 179.71823 * 21 20 19 43 43 H 1.09003 * 109.46871 * 29.98140 * 23 22 21 44 44 H 1.09004 * 109.47167 * 149.97868 * 23 22 21 45 45 H 1.09001 * 109.47144 * 59.99900 * 25 24 23 46 46 H 1.09005 * 109.46746 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.47086 * 299.99713 * 25 24 23 48 48 H 1.07999 * 120.03720 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7137 4.0012 0.6158 8 14 1.5839 4.1864 3.1387 9 1 0.8156 3.2441 3.9914 10 1 2.8258 4.5929 3.8441 11 1 0.7569 5.3879 2.8601 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1297 -2.9996 -2.7564 19 6 5.5395 -3.3400 -3.9672 20 6 6.2662 -4.0284 -4.9183 21 6 7.5768 -4.3887 -4.6623 22 6 8.1656 -4.0565 -3.4562 23 6 9.5936 -4.4517 -3.1816 24 16 9.6287 -6.0888 -2.4009 25 6 11.4010 -6.3842 -2.1519 26 8 8.9776 -6.0259 -1.1394 27 6 7.4461 -3.3628 -2.5027 28 1 -0.3633 0.5899 -0.8415 29 1 -0.3634 -1.0238 -0.0902 30 1 -0.3633 0.4336 0.9316 31 1 3.0797 1.3443 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9882 4.9173 0.7778 34 1 1.3932 -1.6631 -1.2814 35 1 1.9552 -0.1531 -2.0381 36 1 2.9843 -2.8273 0.2042 37 1 3.4166 -2.8115 -2.2453 38 1 3.9751 -1.2717 -2.9419 39 1 5.8112 -2.0650 -0.9476 40 1 4.5149 -3.0625 -4.1660 41 1 5.8094 -4.2899 -5.8613 42 1 8.1415 -4.9311 -5.4062 43 1 10.1482 -4.4844 -4.1193 44 1 10.0508 -3.7211 -2.5143 45 1 11.8126 -5.6052 -1.5102 46 1 11.5445 -7.3565 -1.6803 47 1 11.9109 -6.3685 -3.1152 48 1 7.9067 -3.1032 -1.5609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564722966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = -55.110478 kcal Electronic energy + Delta-G solvation = -26538.366983 eV Core-core repulsion = 22719.934731 eV Total energy + Delta-G solvation = -3818.432252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.65892 -38.14408 -35.99219 -35.93700 -34.94377 -32.52956 -32.49290 -30.85306 -29.38533 -28.73951 -27.31265 -27.09780 -25.69699 -23.61187 -22.64976 -21.78860 -20.69435 -20.08604 -17.82925 -17.26302 -16.68896 -16.44283 -15.98350 -15.71702 -15.62406 -15.38525 -15.03690 -14.74411 -14.65828 -14.30411 -14.04885 -13.79730 -13.67659 -13.47531 -13.31567 -13.13964 -12.99849 -12.82521 -12.57515 -12.26393 -12.00375 -11.95671 -11.52579 -11.46223 -11.21482 -11.15911 -10.96267 -10.78229 -10.66983 -10.64164 -10.41424 -10.01897 -9.80421 -9.71827 -9.15748 -9.02106 -8.43801 -8.38047 -7.40146 -7.24579 -6.03274 -4.03819 0.88648 1.52876 1.67233 2.30369 3.31309 3.38484 3.39186 3.44133 3.47591 3.85361 4.41655 4.45470 4.60716 4.62781 4.73441 4.77331 4.84545 4.97179 5.12063 5.18478 5.28091 5.29905 5.33891 5.36160 5.47826 5.51124 5.54676 5.59966 5.64887 5.77313 5.93731 5.98015 6.04676 6.27839 6.31824 6.37355 6.43377 6.53893 6.69182 6.79289 7.22384 7.28170 7.35744 7.75107 7.79175 8.00753 8.06535 8.17684 8.53030 9.03844 9.60314 11.07853 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.001940 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.250730 B =14429.784625 C =15124.621498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.028 3.972 13 C 0.104 3.896 14 H 0.108 0.892 15 O -0.539 6.539 16 C 0.093 3.907 17 N -0.736 5.736 18 C 0.228 3.772 19 C -0.201 4.201 20 C -0.069 4.069 21 C -0.182 4.182 22 C -0.025 4.025 23 C -0.405 4.405 24 S 1.249 4.751 25 C -0.497 4.497 26 O -0.839 6.839 27 C -0.188 4.188 28 H 0.012 0.988 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.029 0.971 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.365 0.635 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.406 0.594 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.111 0.889 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -22.705 -15.888 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.102 4.102 13 C 0.044 3.956 14 H 0.126 0.874 15 O -0.342 6.342 16 C -0.032 4.032 17 N -0.364 5.364 18 C 0.123 3.877 19 C -0.225 4.225 20 C -0.087 4.087 21 C -0.203 4.203 22 C -0.027 4.027 23 C -0.540 4.540 24 S 1.447 4.553 25 C -0.655 4.655 26 O -0.834 6.834 27 C -0.212 4.212 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.211 0.789 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.242 0.758 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.123 0.877 47 H 0.130 0.870 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.631 -22.804 -15.014 30.083 hybrid contribution 0.389 2.415 1.410 2.823 sum 13.020 -20.389 -13.604 27.754 Atomic orbital electron populations 1.22195 0.88636 0.98663 1.01240 1.62023 1.06680 1.17852 1.39000 1.19794 0.95376 0.81441 0.96675 1.21188 1.34564 0.96810 1.01674 0.91793 1.25001 0.95336 0.97406 0.97041 1.69962 1.38527 1.11414 1.34090 0.86431 0.78154 0.79237 0.83547 1.19638 1.21007 1.21159 1.22604 0.95269 0.98378 0.93908 1.22129 0.96225 0.93337 0.83922 0.87399 1.86677 1.74228 1.34588 1.38751 1.22097 0.82619 0.99117 0.99405 1.44671 1.12338 1.61169 1.18237 1.17817 0.90468 0.90308 0.89117 1.20686 1.00892 1.06803 0.94080 1.20833 0.93874 0.95924 0.98110 1.20691 0.96054 1.06485 0.97109 1.18683 0.92385 0.97353 0.94252 1.26679 0.98781 1.18391 1.10166 1.70794 0.85120 0.97341 1.02016 1.27734 1.22020 1.07567 1.08132 1.93178 1.64866 1.81929 1.43434 1.20460 0.93869 1.06206 1.00673 0.96937 0.93852 0.90877 0.95262 0.99256 0.93015 0.91856 0.94702 0.78915 0.92157 0.91489 0.75810 0.86168 0.86040 0.85927 0.85576 0.88808 0.90190 0.87682 0.86976 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.31 60.07 0.56 1.35 16 2 N -0.53 -11.37 4.59 -244.37 -1.12 -12.49 16 3 C 0.19 5.02 4.55 -4.98 -0.02 5.00 16 4 C -0.50 -14.40 8.58 -34.44 -0.30 -14.70 16 5 H 0.06 1.83 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 C 0.03 0.47 4.65 -3.82 -0.02 0.46 16 13 C 0.10 1.65 3.13 -26.74 -0.08 1.56 16 14 H 0.11 2.05 6.73 -51.93 -0.35 1.70 16 15 O -0.54 -8.92 12.98 -35.23 -0.46 -9.37 16 16 C 0.09 1.18 4.58 -4.04 -0.02 1.16 16 17 N -0.74 -9.87 5.62 -58.63 -0.33 -10.20 16 18 C 0.23 2.99 6.65 -83.79 -0.56 2.43 16 19 C -0.20 -2.30 9.31 -39.38 -0.37 -2.66 16 20 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 21 C -0.18 -1.56 9.70 -39.55 -0.38 -1.95 16 22 C -0.02 -0.25 5.14 -104.66 -0.54 -0.79 16 23 C -0.40 -2.85 6.05 36.00 0.22 -2.63 16 24 S 1.25 8.19 13.78 -107.50 -1.48 6.71 16 25 C -0.50 -2.37 10.74 101.05 1.09 -1.28 16 26 O -0.84 -11.96 18.14 -35.23 -0.64 -12.60 16 27 C -0.19 -2.44 9.55 -39.38 -0.38 -2.81 16 28 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 29 H 0.04 0.69 7.85 -51.92 -0.41 0.28 16 30 H 0.07 1.51 7.01 -51.93 -0.36 1.15 16 31 H 0.03 0.82 6.60 -51.93 -0.34 0.47 16 32 H -0.01 -0.29 8.07 -51.93 -0.42 -0.71 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 35 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.37 4.69 9.05 45.56 0.41 5.10 16 37 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 38 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 39 H 0.41 5.75 8.36 -40.82 -0.34 5.41 16 40 H 0.12 1.25 6.74 -52.49 -0.35 0.90 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.44 8.08 -51.92 -0.42 0.02 16 44 H 0.09 0.77 8.08 -51.92 -0.42 0.35 16 45 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 46 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.11 0.20 8.14 -51.92 -0.42 -0.22 16 48 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -38.20 406.99 -10.58 -48.78 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.11 Total: 6.77 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.29 Total: -14.47 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.71 Total: -49.01 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.10 Total: -21.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 8.19 SS G_CDS: -1.48 Total: 6.71 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.20 -10.58 -48.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564722966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.331 kcal (2) G-P(sol) polarization free energy of solvation -38.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds