Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47594 * 119.99797 * 8 6 4 11 11 H 1.48499 * 109.47226 * 240.00455 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39669 * 120.00242 * 179.97438 * 17 16 13 19 19 C 1.38936 * 120.07666 * 359.72464 * 18 17 16 20 20 C 1.38081 * 119.92426 * 179.74345 * 19 18 17 21 21 C 1.38309 * 120.07376 * 0.53160 * 20 19 18 22 22 C 1.38264 * 120.15399 * 359.74061 * 21 20 19 23 23 C 1.50693 * 119.96561 * 179.97438 * 22 21 20 24 24 S 1.81400 * 109.47622 * 269.98096 * 23 22 21 25 25 C 1.81401 * 103.00072 * 180.02562 * 24 23 22 26 26 O 1.42101 * 109.46610 * 296.38828 * 24 23 22 27 27 C 1.38129 * 120.07089 * 359.97438 * 22 21 20 28 28 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 29 29 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 30 30 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 31 31 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 32 32 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 33 33 H 0.96993 * 120.00483 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 35 35 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 36 36 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 37 37 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 38 38 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 39 39 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 40 40 H 1.07999 * 120.03339 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.96536 * 180.24855 * 20 19 18 42 42 H 1.07998 * 119.92297 * 179.71823 * 21 20 19 43 43 H 1.09003 * 109.46871 * 29.98140 * 23 22 21 44 44 H 1.09004 * 109.47167 * 149.97868 * 23 22 21 45 45 H 1.09001 * 109.47144 * 59.99900 * 25 24 23 46 46 H 1.09005 * 109.46746 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.47086 * 299.99713 * 25 24 23 48 48 H 1.07999 * 120.03720 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7137 4.0012 0.6158 8 14 1.5839 4.1864 3.1387 9 1 0.8156 3.2441 3.9914 10 1 2.8258 4.5929 3.8441 11 1 0.7569 5.3879 2.8601 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1297 -2.9996 -2.7564 19 6 5.5395 -3.3400 -3.9672 20 6 6.2662 -4.0284 -4.9183 21 6 7.5768 -4.3887 -4.6623 22 6 8.1656 -4.0565 -3.4562 23 6 9.5936 -4.4517 -3.1816 24 16 9.6287 -6.0888 -2.4009 25 6 11.4010 -6.3842 -2.1519 26 8 8.9776 -6.0259 -1.1394 27 6 7.4461 -3.3628 -2.5027 28 1 -0.3633 0.5899 -0.8415 29 1 -0.3634 -1.0238 -0.0902 30 1 -0.3633 0.4336 0.9316 31 1 3.0797 1.3443 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9882 4.9173 0.7778 34 1 1.3932 -1.6631 -1.2814 35 1 1.9552 -0.1531 -2.0381 36 1 2.9843 -2.8273 0.2042 37 1 3.4166 -2.8115 -2.2453 38 1 3.9751 -1.2717 -2.9419 39 1 5.8112 -2.0650 -0.9476 40 1 4.5149 -3.0625 -4.1660 41 1 5.8094 -4.2899 -5.8613 42 1 8.1415 -4.9311 -5.4062 43 1 10.1482 -4.4844 -4.1193 44 1 10.0508 -3.7211 -2.5143 45 1 11.8126 -5.6052 -1.5102 46 1 11.5445 -7.3565 -1.6803 47 1 11.9109 -6.3685 -3.1152 48 1 7.9067 -3.1032 -1.5609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564722966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = -86.895663 kcal Electronic energy + Delta-G solvation = -26539.745292 eV Core-core repulsion = 22719.934731 eV Total energy + Delta-G solvation = -3819.810561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53361 -39.45683 -37.44217 -36.80628 -36.06907 -34.65496 -33.25592 -31.97845 -30.04986 -29.76750 -29.23877 -27.78541 -27.02755 -25.39933 -23.61412 -23.04393 -21.83725 -21.45412 -18.66404 -18.48443 -18.17021 -17.63907 -17.15238 -16.87825 -16.60483 -16.33857 -16.24984 -16.00113 -15.78126 -15.35506 -15.18954 -15.18235 -14.65958 -14.61514 -14.43717 -14.09848 -13.96091 -13.93773 -13.55039 -13.35658 -13.22391 -13.12748 -12.95542 -12.67088 -12.61251 -12.59032 -12.38593 -12.30168 -12.16282 -11.95239 -11.62882 -11.45292 -11.36642 -10.92749 -10.82740 -10.65688 -9.75549 -9.07530 -8.99301 -8.31099 -8.25085 -6.34437 0.21423 0.74645 0.98503 1.35839 1.37291 1.50748 1.79829 2.34771 2.39250 2.88509 3.05745 3.07245 3.21561 3.55904 3.74564 3.82372 3.99377 4.03299 4.19480 4.24993 4.30392 4.37139 4.38401 4.53083 4.53802 4.54708 4.62484 4.64458 4.71858 4.75378 4.80705 4.96246 5.02166 5.06207 5.15295 5.16268 5.19249 5.26458 5.43822 5.61108 5.68430 5.76435 6.01468 6.04492 6.29873 6.43950 6.60641 6.69726 6.81833 6.93069 7.35090 8.86186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.001940 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.250730 B =14429.784625 C =15124.621498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.029 3.971 13 C 0.114 3.886 14 H 0.065 0.935 15 O -0.559 6.559 16 C 0.109 3.891 17 N -0.748 5.748 18 C 0.203 3.797 19 C -0.215 4.215 20 C -0.068 4.068 21 C -0.171 4.171 22 C -0.033 4.033 23 C -0.403 4.403 24 S 1.292 4.708 25 C -0.490 4.490 26 O -0.926 6.926 27 C -0.223 4.223 28 H 0.010 0.990 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.001 0.999 32 H -0.038 1.038 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.034 0.966 36 H 0.382 0.618 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.396 0.604 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.174 0.826 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.154 0.846 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.389 -24.971 -18.207 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.201 1.201 12 C -0.100 4.100 13 C 0.054 3.946 14 H 0.083 0.917 15 O -0.365 6.365 16 C -0.016 4.016 17 N -0.377 5.377 18 C 0.099 3.901 19 C -0.238 4.238 20 C -0.087 4.087 21 C -0.192 4.192 22 C -0.035 4.035 23 C -0.539 4.539 24 S 1.494 4.506 25 C -0.649 4.649 26 O -0.922 6.922 27 C -0.247 4.247 28 H 0.029 0.971 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.019 0.981 32 H -0.020 1.020 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.231 0.769 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.188 0.812 43 H 0.192 0.808 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.172 0.828 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.040 -25.109 -17.355 33.192 hybrid contribution 0.396 3.025 2.015 3.656 sum 13.436 -22.085 -15.340 30.060 Atomic orbital electron populations 1.22218 0.87150 1.01056 1.00125 1.61899 1.08134 1.15087 1.41672 1.19397 0.93585 0.83939 0.94805 1.21516 1.34606 0.97434 1.02503 0.92123 1.25940 0.95097 0.98167 1.00769 1.70085 1.39438 1.11871 1.36162 0.85329 0.78042 0.78250 0.78976 1.18803 1.20594 1.20061 1.22721 0.96082 0.99057 0.92133 1.21860 0.95325 0.92383 0.85047 0.91719 1.86634 1.74894 1.35599 1.39369 1.21911 0.82605 0.99553 0.97500 1.44691 1.12659 1.62094 1.18213 1.18069 0.90753 0.91357 0.89913 1.20941 1.01616 1.07383 0.93841 1.21316 0.94182 0.94476 0.98693 1.21239 0.96021 1.05043 0.96884 1.19069 0.93673 0.96476 0.94287 1.26741 0.97529 1.17526 1.12080 1.69699 0.85554 0.96040 0.99318 1.27671 1.19580 1.07273 1.10339 1.93049 1.68713 1.83548 1.46879 1.20566 0.94647 1.08612 1.00851 0.97142 0.89685 0.92835 0.98081 1.02024 0.92725 0.87868 0.94745 0.76924 0.89790 0.91232 0.77042 0.85417 0.82721 0.81223 0.80815 0.90483 0.91735 0.87059 0.82794 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.31 127.69 1.19 2.80 16 2 N -0.54 -23.60 4.59 -927.05 -4.25 -27.86 16 3 C 0.21 11.46 4.55 85.56 0.39 11.85 16 4 C -0.52 -30.80 8.58 25.60 0.22 -30.58 16 5 H 0.06 3.54 7.10 -2.91 -0.02 3.52 16 6 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 7 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 8 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 9 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.03 0.97 4.65 86.30 0.40 1.37 16 13 C 0.11 3.75 3.13 30.59 0.10 3.85 16 14 H 0.06 2.69 6.73 -2.39 -0.02 2.68 16 15 O -0.56 -18.98 12.98 -148.98 -1.93 -20.91 16 16 C 0.11 2.81 4.58 86.38 0.40 3.21 16 17 N -0.75 -21.49 5.62 -339.41 -1.91 -23.40 16 18 C 0.20 5.52 6.65 38.22 0.25 5.78 16 19 C -0.21 -4.68 9.31 22.40 0.21 -4.47 16 20 C -0.07 -1.07 10.04 22.25 0.22 -0.85 16 21 C -0.17 -2.35 9.70 22.29 0.22 -2.13 16 22 C -0.03 -0.64 5.14 -19.89 -0.10 -0.74 16 23 C -0.40 -4.97 6.05 71.23 0.43 -4.54 16 24 S 1.29 15.61 13.78 -56.49 -0.78 14.83 16 25 C -0.49 -3.46 10.74 113.37 1.22 -2.25 16 26 O -0.93 -27.90 18.14 -148.98 -2.70 -30.60 16 27 C -0.22 -6.15 9.55 22.40 0.21 -5.93 16 28 H 0.01 0.38 8.08 -2.39 -0.02 0.37 16 29 H 0.08 2.49 7.85 -2.38 -0.02 2.48 16 30 H 0.05 2.21 7.01 -2.39 -0.02 2.19 16 31 H 0.00 0.07 6.60 -2.39 -0.02 0.05 16 32 H -0.04 -2.23 8.07 -2.39 -0.02 -2.25 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.10 2.62 7.75 -2.39 -0.02 2.60 16 35 H 0.03 1.16 8.00 -2.38 -0.02 1.14 16 36 H 0.38 9.62 9.05 -74.05 -0.67 8.95 16 37 H 0.08 1.76 7.94 -2.39 -0.02 1.74 16 38 H 0.07 1.74 7.96 -2.39 -0.02 1.72 16 39 H 0.40 12.56 8.36 -92.71 -0.77 11.78 16 40 H 0.13 2.47 6.74 -2.91 -0.02 2.45 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 43 H 0.17 0.40 8.08 -2.39 -0.02 0.38 16 44 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.09 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -89.84 406.99 -3.93 -93.77 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.48 Total: 26.05 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 5.81 Total: -22.30 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.88 Total: -108.91 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -4.64 Total: -51.51 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 15.61 SS G_CDS: -0.78 Total: 14.83 kcal Total: -89.84 -3.93 -93.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564722966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.878 kcal (2) G-P(sol) polarization free energy of solvation -89.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds