Wall clock time and date at job start Sat Apr 11 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08999 * 112.88772 * 336.06653 * 10 9 7 12 12 C 1.53952 * 113.66468 * 107.53505 * 10 9 7 13 13 C 1.53954 * 87.29622 * 89.73682 * 12 10 9 14 14 H 1.08998 * 113.74823 * 139.21734 * 13 12 10 15 15 N 1.46503 * 113.66309 * 270.26650 * 13 12 10 16 16 C 1.34778 * 119.99298 * 252.18283 * 15 13 12 17 17 O 1.21596 * 120.00438 * 359.97438 * 16 15 13 18 18 C 1.47520 * 119.99649 * 179.97438 * 16 15 13 19 19 C 1.41037 * 119.39330 * 359.73225 * 18 16 15 20 20 C 1.35193 * 121.65614 * 179.71853 * 19 18 16 21 21 C 1.41379 * 119.92870 * 0.52860 * 20 19 18 22 22 N 1.31922 * 134.39918 * 179.72749 * 21 20 19 23 23 N 1.39917 * 109.06742 * 180.02562 * 22 21 20 24 24 H 0.96996 * 124.98508 * 180.02562 * 23 22 21 25 25 C 1.33815 * 110.02472 * 0.02562 * 23 22 21 26 26 C 1.38536 * 107.83969 * 0.02562 * 25 23 22 27 27 C 1.38216 * 119.39212 * 180.02562 * 18 16 15 28 28 C 1.52914 * 113.66088 * 204.72352 * 10 9 7 29 29 C 1.52904 * 121.13609 * 144.70875 * 28 10 9 30 30 C 1.53957 * 86.78142 * 209.37789 * 29 28 10 31 31 C 1.52912 * 121.13575 * 36.14257 * 28 10 9 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.08998 * 113.57953 * 204.34071 * 12 10 9 35 35 H 1.09001 * 113.58008 * 335.13258 * 12 10 9 36 36 H 0.96991 * 120.00223 * 72.18338 * 15 13 12 37 37 H 1.08005 * 119.17341 * 359.97438 * 19 18 16 38 38 H 1.07994 * 120.03337 * 180.28208 * 20 19 18 39 39 H 1.08001 * 126.08146 * 180.02562 * 25 23 22 40 40 H 1.07997 * 120.33016 * 0.02562 * 27 18 16 41 41 H 1.09002 * 113.66434 * 323.84972 * 29 28 10 42 42 H 1.08996 * 113.66452 * 94.90950 * 29 28 10 43 43 H 1.08990 * 113.57842 * 270.13126 * 30 29 28 44 44 H 1.09000 * 113.57959 * 139.33269 * 30 29 28 45 45 H 1.08996 * 113.66088 * 265.08935 * 31 28 10 46 46 H 1.08995 * 113.65977 * 36.14846 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0666 -3.5661 -0.3957 12 6 1.9928 -4.4008 1.3535 13 6 0.7241 -5.0949 0.8254 14 1 0.6664 -6.1540 1.0766 15 7 -0.5122 -4.3694 1.1278 16 6 -1.3632 -4.8466 2.0576 17 8 -1.1052 -5.8794 2.6451 18 6 -2.6079 -4.1157 2.3625 19 6 -2.8917 -2.9161 1.6774 20 6 -4.0211 -2.2126 1.9166 21 6 -4.9464 -2.6709 2.8823 22 7 -6.1018 -2.2259 3.3377 23 7 -6.5791 -3.1082 4.3131 24 1 -7.4117 -3.0022 4.7993 25 6 -5.7183 -4.1196 4.4767 26 6 -4.6571 -3.9182 3.6092 27 6 -3.4714 -4.6161 3.3187 28 6 1.2657 -4.8259 -0.5791 29 6 1.9587 -5.9263 -1.3834 30 6 0.6308 -6.0850 -2.1461 31 6 0.3219 -4.6256 -1.7654 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.8275 -5.0827 1.5156 35 1 1.8091 -3.7459 2.2052 36 1 -0.7182 -3.5458 0.6588 37 1 -2.1912 -2.5524 0.9402 38 1 -4.2144 -1.2994 1.3734 39 1 -5.8308 -4.9459 5.1629 40 1 -3.2374 -5.5334 3.8384 41 1 2.7788 -5.5644 -2.0035 42 1 2.2286 -6.7989 -0.7887 43 1 -0.0486 -6.8069 -1.6930 44 1 0.7590 -6.2383 -3.2176 45 1 -0.7156 -4.4592 -1.4758 46 1 0.6821 -3.8981 -2.4928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078711328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:05 Heat of formation + Delta-G solvation = 122.805707 kcal Electronic energy + Delta-G solvation = -29626.708008 eV Core-core repulsion = 25712.839581 eV Total energy + Delta-G solvation = -3913.868427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37060 -40.59411 -38.87112 -36.55074 -35.24396 -33.61464 -32.36123 -32.16115 -30.68291 -29.77679 -28.93008 -25.47964 -25.18783 -24.22362 -23.89205 -23.03412 -22.16671 -20.70536 -20.22275 -19.97216 -18.49038 -18.29435 -17.12073 -17.00177 -16.48436 -15.64633 -15.23021 -15.06174 -14.99904 -14.61163 -14.26574 -14.10806 -14.03076 -13.78223 -13.47493 -13.00288 -12.95178 -12.67017 -12.45946 -12.10425 -11.94366 -11.62906 -11.51408 -11.44800 -11.33288 -10.91780 -10.84618 -10.62538 -10.39362 -10.37711 -10.23520 -10.05090 -9.81454 -9.72183 -9.49546 -9.29035 -8.85910 -8.83992 -8.46163 -7.65004 -7.02266 -5.84579 -3.12177 0.47128 1.54129 2.29961 2.51938 3.21101 3.42152 3.45927 3.47588 3.49896 4.08252 4.19183 4.46312 4.53016 4.80413 4.95477 5.00033 5.03341 5.09281 5.16701 5.21359 5.35595 5.38914 5.45891 5.57673 5.58580 5.69687 5.90493 5.93517 6.00541 6.06414 6.13991 6.14898 6.17613 6.29788 6.36452 6.39989 6.45734 6.50357 6.59724 6.65953 6.74934 6.78900 6.82600 6.88146 7.00217 7.16457 7.46772 7.67797 7.98570 8.35415 8.62313 9.46068 10.00622 10.34599 11.38339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.004062 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.148977 B = 6891.192374 C = 9173.076879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.699 5.699 10 C 0.179 3.821 11 H 0.066 0.934 12 C -0.186 4.186 13 C 0.152 3.848 14 H 0.092 0.908 15 N -0.694 5.694 16 C 0.565 3.435 17 O -0.557 6.557 18 C -0.166 4.166 19 C -0.044 4.044 20 C -0.107 4.107 21 C 0.123 3.877 22 N -0.311 5.311 23 N -0.427 5.427 24 H 0.443 0.557 25 C 0.096 3.904 26 C -0.219 4.219 27 C 0.026 3.974 28 C -0.133 4.133 29 C -0.104 4.104 30 C -0.141 4.141 31 C -0.116 4.116 32 H 0.257 0.743 33 H 0.378 0.622 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.191 0.809 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.408 -11.776 4.495 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.067 3.933 11 H 0.084 0.916 12 C -0.229 4.229 13 C 0.046 3.954 14 H 0.110 0.890 15 N -0.346 5.346 16 C 0.354 3.646 17 O -0.437 6.437 18 C -0.171 4.171 19 C -0.067 4.067 20 C -0.128 4.128 21 C -0.032 4.032 22 N -0.139 5.139 23 N -0.126 5.126 24 H 0.287 0.713 25 C -0.063 4.063 26 C -0.229 4.229 27 C 0.005 3.995 28 C -0.135 4.135 29 C -0.142 4.142 30 C -0.179 4.179 31 C -0.153 4.153 32 H 0.067 0.933 33 H 0.213 0.787 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.208 0.792 40 H 0.156 0.844 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.025 -11.310 4.772 15.849 hybrid contribution 0.169 0.856 0.309 0.926 sum -9.855 -10.454 5.081 15.239 Atomic orbital electron populations 1.69582 1.05017 1.26052 1.57356 1.24689 0.95558 0.97593 1.02582 0.86259 0.78555 0.83470 0.77819 1.21297 1.21705 1.21311 1.19224 0.91133 0.83777 1.43215 0.90996 1.42076 1.05181 0.99416 1.87210 1.21052 0.94895 0.85113 0.92227 0.91630 1.24302 0.96403 1.00264 1.01893 1.21420 0.83834 0.95970 0.94168 0.88990 1.45680 1.20772 1.27817 1.40342 1.18109 0.83039 0.84269 0.79224 1.90710 1.76783 1.24633 1.51601 1.19551 0.96940 0.98184 1.02419 1.20898 0.96000 0.92364 0.97436 1.19787 0.93028 1.01575 0.98383 1.21128 0.92594 0.93333 0.96104 1.77674 1.13910 1.14295 1.07974 1.46323 1.19291 1.17059 1.29908 0.71292 1.22793 0.90469 0.93679 0.99318 1.19561 0.98917 1.00256 1.04185 1.20591 0.89268 0.96962 0.92699 1.23459 0.98605 0.98510 0.92968 1.22477 0.96773 0.97183 0.97744 1.22860 0.97661 0.97799 0.99575 1.22509 0.99166 0.95987 0.97664 0.93282 0.78655 0.90480 0.90935 0.75273 0.84220 0.84600 0.79227 0.84440 0.89692 0.91674 0.90772 0.91991 0.91997 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.94 13.06 55.49 0.72 -25.22 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.36 9.97 -15.06 -0.15 -6.51 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.17 4.98 -52.99 -0.26 -16.43 16 10 C 0.18 3.43 4.36 -67.48 -0.29 3.13 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 12 C -0.19 -3.34 7.68 -25.75 -0.20 -3.54 16 13 C 0.15 2.58 4.13 -67.47 -0.28 2.30 16 14 H 0.09 1.57 7.46 -51.93 -0.39 1.19 16 15 N -0.69 -12.25 4.63 -54.41 -0.25 -12.50 16 16 C 0.57 10.13 7.75 -12.48 -0.10 10.03 16 17 O -0.56 -11.01 15.86 5.28 0.08 -10.93 16 18 C -0.17 -2.69 5.86 -105.06 -0.62 -3.31 16 19 C -0.04 -0.71 9.39 -39.61 -0.37 -1.09 16 20 C -0.11 -1.67 10.06 -39.47 -0.40 -2.06 16 21 C 0.12 1.84 7.49 -82.97 -0.62 1.22 16 22 N -0.31 -4.30 12.69 33.30 0.42 -3.88 16 23 N -0.43 -3.82 7.17 30.87 0.22 -3.60 16 24 H 0.44 2.06 8.96 -182.74 -1.64 0.43 16 25 C 0.10 0.82 12.09 -16.58 -0.20 0.62 16 26 C -0.22 -2.84 6.32 -105.23 -0.66 -3.51 16 27 C 0.03 0.37 9.64 -38.69 -0.37 0.00 16 28 C -0.13 -2.12 0.78 -154.71 -0.12 -2.24 16 29 C -0.10 -1.37 7.84 -26.28 -0.21 -1.57 16 30 C -0.14 -1.84 8.08 -25.74 -0.21 -2.05 16 31 C -0.12 -1.81 7.27 -26.28 -0.19 -2.00 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.38 8.92 5.33 -40.82 -0.22 8.71 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.41 7.49 3.87 -40.82 -0.16 7.33 16 37 H 0.14 2.38 6.27 -52.48 -0.33 2.05 16 38 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.76 7.58 -52.49 -0.40 1.36 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.99 7.58 -51.93 -0.39 0.60 16 46 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -32.49 377.87 -10.77 -43.26 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -7.29 Total: 17.81 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -5.08 Total: -10.87 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.85 Total: -61.63 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.49 -10.77 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078711328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.065 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds