Wall clock time and date at job start Sat Apr 11 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34783 * 119.99554 * 2 1 4 4 O 1.21280 * 119.99374 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00098 * 0.02562 * 3 2 1 6 6 C 1.53004 * 117.49550 * 248.74440 * 5 3 2 7 7 C 1.52997 * 117.49786 * 180.08707 * 5 3 2 8 8 C 1.46499 * 120.00105 * 180.02562 * 2 1 3 9 9 H 1.08999 * 108.44681 * 177.68119 * 8 2 1 10 10 C 1.52570 * 108.51066 * 295.23128 * 8 2 1 11 11 C 1.50884 * 109.35358 * 206.26395 * 10 8 2 12 12 C 1.53597 * 109.95530 * 268.02255 * 11 10 8 13 13 N 1.47609 * 112.33853 * 40.84004 * 12 11 10 14 14 C 1.34775 * 118.64179 * 222.03978 * 13 12 11 15 15 O 1.21284 * 120.00295 * 179.73291 * 14 13 12 16 16 C 1.50708 * 119.99957 * 359.72301 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.44571 * 122.71196 * 41.75464 * 13 12 11 27 27 C 1.47092 * 108.50964 * 59.99728 * 8 2 1 28 28 H 1.09007 * 109.46673 * 269.99745 * 1 2 3 29 29 H 1.08992 * 109.47220 * 29.99392 * 1 2 3 30 30 H 1.08993 * 109.47248 * 150.00363 * 1 2 3 31 31 H 1.08993 * 115.55475 * 34.41758 * 5 3 2 32 32 H 1.08998 * 117.49994 * 0.02562 * 6 5 3 33 33 H 1.09002 * 117.49393 * 145.02615 * 6 5 3 34 34 H 1.09001 * 117.50236 * 214.97747 * 7 5 3 35 35 H 1.09007 * 117.49806 * 359.97438 * 7 5 3 36 36 H 1.08994 * 109.48810 * 326.22670 * 10 8 2 37 37 H 1.09004 * 109.48836 * 86.28060 * 10 8 2 38 38 H 1.09000 * 109.36734 * 28.30499 * 11 10 8 39 39 H 1.09003 * 109.36382 * 148.04846 * 11 10 8 40 40 H 1.09000 * 108.94253 * 280.03441 * 12 11 10 41 41 H 1.08997 * 108.75715 * 161.51761 * 12 11 10 42 42 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 43 43 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 44 44 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 45 45 H 1.08992 * 109.45342 * 29.57379 * 26 13 12 46 46 H 1.09006 * 109.45121 * 149.49567 * 26 13 12 47 47 H 1.08996 * 109.32930 * 55.68421 * 27 8 2 48 48 H 1.09004 * 109.33018 * 296.20424 * 27 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 1.4577 3.3304 -1.2641 7 6 2.2073 3.7627 -0.0015 8 6 2.1976 -1.2687 -0.0006 9 1 3.2647 -1.0508 -0.0423 10 6 1.9057 -1.9971 1.3078 11 6 3.0584 -2.9129 1.6382 12 6 2.7994 -4.3117 1.0591 13 7 2.2087 -4.2587 -0.2927 14 6 1.2087 -5.1103 -0.5946 15 8 0.7022 -5.0847 -1.6963 16 6 0.7200 -6.0945 0.4368 17 16 -0.6177 -7.0907 -0.2662 18 6 -0.9879 -8.1229 1.1129 19 1 -0.4343 -8.0128 2.0337 20 6 -1.9908 -9.0774 1.0160 21 7 -2.6652 -9.2119 -0.1065 22 14 -2.3837 -10.1712 2.4784 23 1 -3.4856 -11.1000 2.1200 24 1 -1.1776 -10.9545 2.8488 25 1 -2.7997 -9.3293 3.6287 26 6 2.6546 -3.3269 -1.3041 27 6 1.8270 -2.0213 -1.2088 28 1 -0.3633 0.0000 1.0278 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5137 31 1 0.4479 2.4737 0.5567 32 1 2.0500 2.9507 -2.0967 33 1 0.5679 3.8966 -1.5397 34 1 1.8106 4.6131 0.5530 35 1 3.2932 3.6677 -0.0029 36 1 1.7785 -1.2690 2.1089 37 1 0.9934 -2.5842 1.2016 38 1 3.9761 -2.5069 1.2126 39 1 3.1634 -2.9857 2.7208 40 1 2.1201 -4.8486 1.7212 41 1 3.7449 -4.8518 1.0111 42 1 0.3513 -5.5540 1.3087 43 1 1.5408 -6.7470 0.7340 44 1 -2.4614 -8.6436 -0.8657 45 1 3.7094 -3.1001 -1.1490 46 1 2.5204 -3.7704 -2.2908 47 1 2.0186 -1.4077 -2.0890 48 1 0.7662 -2.2688 -1.1686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078765928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:20 Heat of formation + Delta-G solvation = -43.250306 kcal Electronic energy + Delta-G solvation = -27969.294943 eV Core-core repulsion = 24151.376987 eV Total energy + Delta-G solvation = -3817.917956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95505 -39.89199 -37.91124 -36.36388 -35.64587 -33.00622 -32.73851 -32.54690 -29.56498 -27.31031 -26.72486 -25.85935 -24.86629 -23.88671 -22.83914 -22.00940 -20.51134 -19.30887 -18.95961 -18.18079 -17.89330 -17.05276 -16.54285 -16.14778 -15.77260 -15.60611 -15.09586 -14.76400 -14.52851 -14.27628 -13.96900 -13.86307 -13.55014 -13.38836 -13.29083 -12.95480 -12.88324 -12.59146 -12.49227 -12.42328 -11.97030 -11.88034 -11.84929 -11.65142 -11.54471 -11.19615 -11.05491 -11.00095 -10.94075 -10.90894 -10.77049 -10.19559 -10.01723 -9.57639 -9.47339 -9.03784 -8.98889 -8.57937 -8.24039 -6.69841 -6.64340 -4.02417 2.18018 2.60978 2.82418 2.93466 3.30882 3.35763 3.42627 3.46968 3.55865 4.08248 4.21886 4.34994 4.38323 4.47838 4.57445 4.66334 4.69647 4.78942 4.85964 4.89233 5.00661 5.08434 5.15473 5.18384 5.20202 5.25851 5.32305 5.34950 5.40239 5.42676 5.48994 5.53250 5.55144 5.67874 5.71958 5.72353 5.76833 5.84453 5.91551 5.95597 6.00676 6.07914 6.27601 6.68591 7.08523 7.39506 7.89123 7.89180 8.44569 8.47816 9.24755 10.79521 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002332 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.276247 B =12002.755836 C =12188.954485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.544 3.456 4 O -0.544 6.544 5 C -0.196 4.196 6 C -0.152 4.152 7 C -0.149 4.149 8 C 0.145 3.855 9 H 0.096 0.904 10 C -0.123 4.123 11 C -0.129 4.129 12 C 0.105 3.895 13 N -0.612 5.612 14 C 0.528 3.472 15 O -0.515 6.515 16 C -0.129 4.129 17 S -0.118 6.118 18 C -0.607 4.607 19 H 0.065 0.935 20 C 0.035 3.965 21 N -0.884 5.884 22 Si 1.083 2.917 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.126 3.874 27 C -0.146 4.146 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.278 0.722 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.498 23.379 2.836 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C 0.332 3.668 4 O -0.422 6.422 5 C -0.217 4.217 6 C -0.190 4.190 7 C -0.186 4.186 8 C 0.042 3.958 9 H 0.114 0.886 10 C -0.162 4.162 11 C -0.167 4.167 12 C -0.017 4.017 13 N -0.348 5.348 14 C 0.316 3.684 15 O -0.389 6.389 16 C -0.280 4.280 17 S 0.109 5.891 18 C -0.755 4.755 19 H 0.083 0.917 20 C -0.175 4.175 21 N -0.518 5.518 22 Si 0.909 3.091 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.001 3.999 27 C -0.185 4.185 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.414 22.185 1.688 24.159 hybrid contribution 1.424 1.167 1.122 2.156 sum 10.837 23.352 2.810 25.897 Atomic orbital electron populations 1.21839 0.79351 1.03681 1.02105 1.48042 1.07238 1.05714 1.73239 1.19701 0.87274 0.84452 0.75365 1.90670 1.13902 1.87205 1.50391 1.22234 1.02749 0.90849 1.05836 1.22946 1.03239 1.01385 0.91382 1.22967 1.00054 0.95267 1.00302 1.20157 0.98167 0.82431 0.94996 0.88607 1.21426 0.99618 0.98582 0.96552 1.21639 0.98749 0.94763 1.01573 1.21962 0.99322 0.97396 0.83060 1.47718 1.37260 1.36638 1.13186 1.20365 0.78680 0.80681 0.88706 1.90695 1.55398 1.69756 1.23098 1.23374 1.03982 0.99930 1.00701 1.84819 1.40228 1.41839 1.22263 1.23683 1.27058 1.24888 0.99847 0.91668 1.26048 0.92187 0.96779 1.02519 1.70803 1.39205 1.38711 1.03050 0.83340 0.76627 0.75669 0.73442 1.20272 1.21126 1.21141 1.21219 0.97352 0.88239 0.93082 1.21570 1.02272 0.97057 0.97626 0.92423 0.90788 0.90388 0.85822 0.88262 0.87724 0.87921 0.87444 0.91331 0.90955 0.91166 0.90073 0.89447 0.91586 0.89088 0.89056 0.90992 0.90725 0.89276 0.90647 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 9.44 59.85 0.56 1.13 16 2 N -0.61 -6.03 2.59 -177.48 -0.46 -6.49 16 3 C 0.54 5.96 7.46 -10.99 -0.08 5.88 16 4 O -0.54 -7.79 15.55 5.56 0.09 -7.70 16 5 C -0.20 -1.53 4.79 -91.77 -0.44 -1.97 16 6 C -0.15 -1.00 10.24 -26.69 -0.27 -1.27 16 7 C -0.15 -1.05 10.05 -26.69 -0.27 -1.32 16 8 C 0.14 1.51 1.97 -70.99 -0.14 1.37 16 9 H 0.10 1.13 6.03 -51.93 -0.31 0.81 16 10 C -0.12 -1.22 4.69 -28.01 -0.13 -1.35 16 11 C -0.13 -1.12 5.70 -27.48 -0.16 -1.28 16 12 C 0.11 1.10 5.91 -3.12 -0.02 1.08 16 13 N -0.61 -8.17 2.25 -172.75 -0.39 -8.56 16 14 C 0.53 9.58 7.63 -10.98 -0.08 9.49 16 15 O -0.52 -11.24 15.30 5.55 0.08 -11.15 16 16 C -0.13 -2.55 4.48 36.01 0.16 -2.39 16 17 S -0.12 -3.13 19.60 -107.50 -2.11 -5.23 16 18 C -0.61 -17.25 9.50 30.94 0.29 -16.96 16 19 H 0.07 1.77 7.80 -52.49 -0.41 1.36 16 20 C 0.04 1.01 5.49 -17.43 -0.10 0.92 16 21 N -0.88 -27.28 13.67 55.49 0.76 -26.52 16 22 Si 1.08 24.66 29.92 -169.99 -5.09 19.58 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 26 C 0.13 1.49 5.38 -4.09 -0.02 1.47 16 27 C -0.15 -1.63 4.85 -28.58 -0.14 -1.77 16 28 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.45 6.64 -51.93 -0.34 0.10 16 30 H 0.08 0.68 6.37 -51.93 -0.33 0.34 16 31 H 0.12 0.74 7.27 -51.93 -0.38 0.36 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.93 7.67 -51.93 -0.40 0.53 16 36 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 38 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.95 5.82 -51.93 -0.30 0.65 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 43 H 0.09 1.70 8.03 -51.92 -0.42 1.28 16 44 H 0.28 8.76 7.12 -40.82 -0.29 8.46 16 45 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 46 H 0.09 1.20 7.30 -51.93 -0.38 0.82 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.97 6.63 -51.93 -0.34 0.62 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -35.75 389.77 -9.72 -45.47 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.65 Total: 1.70 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.83 Total: -6.95 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.09 Total: -41.58 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.85 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.58 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.75 -9.72 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078765928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.215 kcal (2) G-P(sol) polarization free energy of solvation -35.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds