Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34783 * 119.99554 * 2 1 4 4 O 1.21280 * 119.99374 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00098 * 0.02562 * 3 2 1 6 6 C 1.53004 * 117.49550 * 248.74440 * 5 3 2 7 7 C 1.52997 * 117.49786 * 180.08707 * 5 3 2 8 8 C 1.46499 * 120.00105 * 180.02562 * 2 1 3 9 9 H 1.08999 * 108.44681 * 177.68119 * 8 2 1 10 10 C 1.52570 * 108.51066 * 295.23128 * 8 2 1 11 11 C 1.50884 * 109.35358 * 206.26395 * 10 8 2 12 12 C 1.53597 * 109.95530 * 268.02255 * 11 10 8 13 13 N 1.47609 * 112.33853 * 40.84004 * 12 11 10 14 14 C 1.34775 * 118.64179 * 222.03978 * 13 12 11 15 15 O 1.21284 * 120.00295 * 179.73291 * 14 13 12 16 16 C 1.50708 * 119.99957 * 359.72301 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.44571 * 122.71196 * 41.75464 * 13 12 11 27 27 C 1.47092 * 108.50964 * 59.99728 * 8 2 1 28 28 H 1.09007 * 109.46673 * 269.99745 * 1 2 3 29 29 H 1.08992 * 109.47220 * 29.99392 * 1 2 3 30 30 H 1.08993 * 109.47248 * 150.00363 * 1 2 3 31 31 H 1.08993 * 115.55475 * 34.41758 * 5 3 2 32 32 H 1.08998 * 117.49994 * 0.02562 * 6 5 3 33 33 H 1.09002 * 117.49393 * 145.02615 * 6 5 3 34 34 H 1.09001 * 117.50236 * 214.97747 * 7 5 3 35 35 H 1.09007 * 117.49806 * 359.97438 * 7 5 3 36 36 H 1.08994 * 109.48810 * 326.22670 * 10 8 2 37 37 H 1.09004 * 109.48836 * 86.28060 * 10 8 2 38 38 H 1.09000 * 109.36734 * 28.30499 * 11 10 8 39 39 H 1.09003 * 109.36382 * 148.04846 * 11 10 8 40 40 H 1.09000 * 108.94253 * 280.03441 * 12 11 10 41 41 H 1.08997 * 108.75715 * 161.51761 * 12 11 10 42 42 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 43 43 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 44 44 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 45 45 H 1.08992 * 109.45342 * 29.57379 * 26 13 12 46 46 H 1.09006 * 109.45121 * 149.49567 * 26 13 12 47 47 H 1.08996 * 109.32930 * 55.68421 * 27 8 2 48 48 H 1.09004 * 109.33018 * 296.20424 * 27 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 1.4577 3.3304 -1.2641 7 6 2.2073 3.7627 -0.0015 8 6 2.1976 -1.2687 -0.0006 9 1 3.2647 -1.0508 -0.0423 10 6 1.9057 -1.9971 1.3078 11 6 3.0584 -2.9129 1.6382 12 6 2.7994 -4.3117 1.0591 13 7 2.2087 -4.2587 -0.2927 14 6 1.2087 -5.1103 -0.5946 15 8 0.7022 -5.0847 -1.6963 16 6 0.7200 -6.0945 0.4368 17 16 -0.6177 -7.0907 -0.2662 18 6 -0.9879 -8.1229 1.1129 19 1 -0.4343 -8.0128 2.0337 20 6 -1.9908 -9.0774 1.0160 21 7 -2.6652 -9.2119 -0.1065 22 14 -2.3837 -10.1712 2.4784 23 1 -3.4856 -11.1000 2.1200 24 1 -1.1776 -10.9545 2.8488 25 1 -2.7997 -9.3293 3.6287 26 6 2.6546 -3.3269 -1.3041 27 6 1.8270 -2.0213 -1.2088 28 1 -0.3633 0.0000 1.0278 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5137 31 1 0.4479 2.4737 0.5567 32 1 2.0500 2.9507 -2.0967 33 1 0.5679 3.8966 -1.5397 34 1 1.8106 4.6131 0.5530 35 1 3.2932 3.6677 -0.0029 36 1 1.7785 -1.2690 2.1089 37 1 0.9934 -2.5842 1.2016 38 1 3.9761 -2.5069 1.2126 39 1 3.1634 -2.9857 2.7208 40 1 2.1201 -4.8486 1.7212 41 1 3.7449 -4.8518 1.0111 42 1 0.3513 -5.5540 1.3087 43 1 1.5408 -6.7470 0.7340 44 1 -2.4614 -8.6436 -0.8657 45 1 3.7094 -3.1001 -1.1490 46 1 2.5204 -3.7704 -2.2908 47 1 2.0186 -1.4077 -2.0890 48 1 0.7662 -2.2688 -1.1686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078765928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -64.775908 kcal Electronic energy + Delta-G solvation = -27970.228363 eV Core-core repulsion = 24151.376987 eV Total energy + Delta-G solvation = -3818.851376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89638 -40.98398 -38.93996 -37.13389 -36.61123 -34.74288 -33.98277 -33.71063 -30.99640 -28.13892 -27.65514 -27.08302 -26.66844 -24.73882 -23.36158 -23.05227 -21.32718 -20.66312 -20.08082 -19.70876 -18.66804 -18.31631 -17.58579 -17.23011 -16.94260 -16.54704 -16.35087 -15.78081 -15.67775 -15.51735 -15.25197 -15.09145 -14.73332 -14.49497 -14.41197 -14.13327 -14.05345 -13.78860 -13.60668 -13.51978 -13.20057 -13.17516 -12.73159 -12.55172 -12.52048 -12.41415 -12.08951 -11.95426 -11.85899 -11.74720 -11.56363 -11.50027 -11.43178 -11.09004 -10.94546 -10.85575 -10.30465 -9.87778 -9.65748 -8.91534 -8.86551 -6.26769 1.19240 1.39793 1.47342 1.52380 1.60886 1.80889 1.87365 2.03035 2.34512 2.88973 3.03029 3.08591 3.33974 3.50446 3.61383 3.80440 3.83027 3.90633 3.93958 3.97203 4.02365 4.12798 4.15328 4.21694 4.24629 4.32638 4.36310 4.51548 4.55430 4.57829 4.67900 4.70832 4.80595 4.82971 4.87215 4.88905 4.99356 5.01262 5.07511 5.13174 5.19418 5.22604 5.47971 5.59722 5.64943 6.14484 6.16656 6.30711 7.05979 7.07678 7.07702 8.51843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002332 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.276247 B =12002.755836 C =12188.954485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.536 3.464 4 O -0.585 6.585 5 C -0.203 4.203 6 C -0.143 4.143 7 C -0.150 4.150 8 C 0.147 3.853 9 H 0.087 0.913 10 C -0.118 4.118 11 C -0.121 4.121 12 C 0.098 3.902 13 N -0.595 5.595 14 C 0.528 3.472 15 O -0.562 6.562 16 C -0.104 4.104 17 S -0.196 6.196 18 C -0.611 4.611 19 H 0.075 0.925 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.135 2.865 23 H -0.281 1.281 24 H -0.263 1.263 25 H -0.262 1.262 26 C 0.123 3.877 27 C -0.134 4.134 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.147 0.853 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.260 0.740 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 24.748 5.266 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.327 3.673 4 O -0.466 6.466 5 C -0.223 4.223 6 C -0.180 4.180 7 C -0.187 4.187 8 C 0.044 3.956 9 H 0.105 0.895 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.023 4.023 13 N -0.328 5.328 14 C 0.316 3.684 15 O -0.440 6.440 16 C -0.256 4.256 17 S 0.031 5.969 18 C -0.759 4.759 19 H 0.093 0.907 20 C -0.223 4.223 21 N -0.549 5.549 22 Si 0.953 3.047 23 H -0.206 1.206 24 H -0.188 1.188 25 H -0.187 1.187 26 C 0.000 4.000 27 C -0.173 4.173 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.281 23.597 4.139 26.070 hybrid contribution 1.279 0.862 0.343 1.580 sum 11.560 24.459 4.482 27.422 Atomic orbital electron populations 1.21966 0.78008 1.04111 1.03012 1.48125 1.08078 1.05343 1.72549 1.20282 0.87018 0.85568 0.74479 1.90644 1.15707 1.87836 1.52405 1.22310 1.03406 0.89336 1.07289 1.23032 1.03825 1.00640 0.90499 1.23021 0.98968 0.95660 1.01083 1.20068 0.97746 0.82811 0.94936 0.89485 1.21376 0.99454 0.98628 0.96192 1.21625 0.98373 0.93093 1.02838 1.22261 0.99992 0.99010 0.81076 1.47701 1.35302 1.35103 1.14700 1.20120 0.79530 0.81158 0.87610 1.90683 1.57369 1.71263 1.24672 1.23264 1.01589 0.99561 1.01136 1.85063 1.44121 1.43713 1.24048 1.24009 1.26911 1.24752 1.00208 0.90676 1.27812 0.91887 0.98237 1.04324 1.70923 1.40788 1.39476 1.03693 0.82735 0.77142 0.74279 0.70567 1.20649 1.18827 1.18683 1.21345 0.98953 0.87890 0.91855 1.21426 1.00837 0.96729 0.98295 0.91234 0.88733 0.91619 0.83508 0.89631 0.85111 0.85529 0.89582 0.90858 0.92469 0.90382 0.87892 0.89554 0.89390 0.87274 0.87427 0.92876 0.87885 0.91112 0.90526 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 9.44 127.77 1.21 2.22 16 2 N -0.61 -11.44 2.59 -833.82 -2.16 -13.59 16 3 C 0.54 11.28 7.46 87.65 0.65 11.93 16 4 O -0.59 -16.69 15.55 -3.03 -0.05 -16.74 16 5 C -0.20 -2.78 4.79 -11.54 -0.06 -2.83 16 6 C -0.14 -1.59 10.24 30.62 0.31 -1.28 16 7 C -0.15 -1.89 10.05 30.62 0.31 -1.58 16 8 C 0.15 2.93 1.97 43.01 0.08 3.02 16 9 H 0.09 1.95 6.03 -2.39 -0.01 1.93 16 10 C -0.12 -2.12 4.69 29.76 0.14 -1.98 16 11 C -0.12 -1.76 5.70 30.11 0.17 -1.58 16 12 C 0.10 1.77 5.91 86.37 0.51 2.28 16 13 N -0.59 -15.16 2.25 -818.85 -1.84 -17.00 16 14 C 0.53 19.13 7.63 87.66 0.67 19.80 16 15 O -0.56 -25.30 15.30 -3.04 -0.05 -25.34 16 16 C -0.10 -4.06 4.48 71.24 0.32 -3.74 16 17 S -0.20 -10.68 19.60 -56.49 -1.11 -11.78 16 18 C -0.61 -34.76 9.50 67.95 0.65 -34.11 16 19 H 0.08 3.99 7.80 -2.92 -0.02 3.96 16 20 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 21 N -0.91 -57.71 13.67 21.65 0.30 -57.41 16 22 Si 1.14 48.64 29.92 68.60 2.05 50.70 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 C 0.12 2.84 5.38 87.38 0.47 3.31 16 27 C -0.13 -2.96 4.85 29.40 0.14 -2.81 16 28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.09 0.95 6.64 -2.39 -0.02 0.93 16 30 H 0.07 1.12 6.37 -2.39 -0.02 1.10 16 31 H 0.15 1.30 7.27 -2.39 -0.02 1.28 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.47 7.67 -2.38 -0.02 1.46 16 36 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 37 H 0.06 1.22 7.48 -2.39 -0.02 1.20 16 38 H 0.08 1.07 7.31 -2.39 -0.02 1.06 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.62 5.82 -2.39 -0.01 1.61 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.11 3.85 7.40 -2.39 -0.02 3.83 16 43 H 0.11 3.84 8.03 -2.40 -0.02 3.82 16 44 H 0.26 17.11 7.12 -92.71 -0.66 16.45 16 45 H 0.10 1.82 8.07 -2.39 -0.02 1.81 16 46 H 0.07 1.94 7.30 -2.38 -0.02 1.92 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.06 1.47 6.63 -2.38 -0.02 1.45 16 Total: -1.00 -81.11 389.77 4.26 -76.85 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.06 Total: 22.32 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 6.05 Total: -8.01 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.70 Total: -88.00 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.09 Total: -42.08 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.70 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.11 Total: -11.78 kcal Total: -81.11 4.26 -76.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078765928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.076 kcal (2) G-P(sol) polarization free energy of solvation -81.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds