Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99418 * 2 1 4 4 H 1.48496 * 109.46955 * 239.99706 * 3 2 1 5 5 H 1.48493 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47040 * 120.00058 * 3 2 1 7 7 C 1.38809 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00069 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.94934 * 336.40529 * 10 9 7 12 12 C 1.53954 * 113.66346 * 107.81408 * 10 9 7 13 13 C 1.53943 * 87.29746 * 139.20539 * 12 10 9 14 14 H 1.09000 * 113.75120 * 220.78154 * 13 12 10 15 15 N 1.46506 * 113.66557 * 89.73639 * 13 12 10 16 16 C 1.34775 * 119.99693 * 107.81012 * 15 13 12 17 17 O 1.21663 * 120.00500 * 0.02562 * 16 15 13 18 18 C 1.46936 * 119.99862 * 180.02562 * 16 15 13 19 19 C 1.36477 * 126.72193 * 359.69229 * 18 16 15 20 20 N 1.35362 * 109.77170 * 179.82885 * 19 18 16 21 21 H 0.96998 * 124.82583 * 180.18143 * 20 19 18 22 22 C 1.37859 * 110.34989 * 0.44808 * 20 19 18 23 23 C 1.39227 * 133.47923 * 179.69358 * 22 20 19 24 24 C 1.38335 * 118.30198 * 180.02562 * 23 22 20 25 25 C 1.38605 * 119.64199 * 0.02562 * 24 23 22 26 26 N 1.31627 * 121.19119 * 359.96187 * 25 24 23 27 27 C 1.32698 * 121.42745 * 0.07265 * 26 25 24 28 28 C 1.52907 * 86.78215 * 335.26517 * 13 12 10 29 29 C 1.52907 * 121.13663 * 259.17980 * 28 13 12 30 30 C 1.53957 * 86.78221 * 209.37875 * 29 28 13 31 31 C 1.52910 * 121.13865 * 150.61940 * 28 13 12 32 32 H 0.97001 * 120.00652 * 359.97438 * 1 2 3 33 33 H 0.97000 * 119.99967 * 359.97438 * 9 7 2 34 34 H 1.08998 * 113.58085 * 24.59642 * 12 10 9 35 35 H 1.09006 * 113.57333 * 253.81058 * 12 10 9 36 36 H 0.97000 * 120.00117 * 287.81364 * 15 13 12 37 37 H 1.07998 * 125.11457 * 359.96198 * 19 18 16 38 38 H 1.08004 * 120.84985 * 0.06445 * 23 22 20 39 39 H 1.08000 * 120.18121 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.40593 * 180.02562 * 25 24 23 41 41 H 1.08999 * 113.66650 * 323.85154 * 29 28 13 42 42 H 1.09002 * 113.66061 * 94.91304 * 29 28 13 43 43 H 1.08996 * 113.58056 * 270.12744 * 30 29 28 44 44 H 1.09006 * 113.64746 * 139.34776 * 30 29 28 45 45 H 1.09005 * 113.66392 * 265.09466 * 31 28 13 46 46 H 1.09005 * 113.66432 * 36.05373 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0674 -3.5648 -0.4012 12 6 1.9937 -4.4075 1.3430 13 6 1.8254 -5.7023 0.5275 14 1 1.0948 -6.3937 0.9473 15 7 3.0937 -6.3516 0.1865 16 6 3.4516 -7.4960 0.8019 17 8 2.7214 -7.9902 1.6402 18 6 4.7239 -8.1469 0.4603 19 6 5.6391 -7.7187 -0.4570 20 7 6.6868 -8.5752 -0.4928 21 1 7.4626 -8.4777 -1.0668 22 6 6.4916 -9.6088 0.3983 23 6 7.2405 -10.7307 0.7430 24 6 6.7342 -11.5873 1.7041 25 6 5.5097 -11.3111 2.2918 26 7 4.8159 -10.2451 1.9531 27 6 5.2586 -9.3940 1.0363 28 6 1.2659 -4.8229 -0.5913 29 6 -0.2399 -4.7137 -0.8330 30 6 0.1036 -4.4615 -2.3125 31 6 1.4200 -5.2188 -2.0602 32 1 -0.4851 0.8400 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 1.1200 -4.1534 1.9431 35 1 2.9237 -4.3672 1.9103 36 1 3.6758 -5.9578 -0.4820 37 1 5.5431 -6.8291 -1.0618 38 1 8.1927 -10.9269 0.2726 39 1 7.2900 -12.4664 1.9949 40 1 5.1182 -11.9822 3.0420 41 1 -0.7792 -5.6454 -0.6619 42 1 -0.7014 -3.8586 -0.3392 43 1 0.2458 -3.4081 -2.5536 44 1 -0.5644 -4.9683 -3.0090 45 1 2.2846 -4.7672 -2.5466 46 1 1.3489 -6.2926 -2.2337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078785177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = 96.636341 kcal Electronic energy + Delta-G solvation = -28877.740779 eV Core-core repulsion = 24962.737562 eV Total energy + Delta-G solvation = -3915.003216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97066 -40.45145 -38.59888 -38.04681 -34.90321 -33.96145 -33.10304 -32.21457 -30.53645 -30.02924 -29.32283 -25.41809 -24.87337 -24.09336 -24.05649 -23.40199 -22.77660 -21.83219 -20.32653 -19.59380 -18.69524 -17.87148 -17.27263 -16.93811 -16.52901 -16.25033 -15.67321 -15.43895 -15.12738 -15.03242 -14.72734 -14.21414 -14.11529 -13.73723 -13.54667 -13.22232 -13.10120 -12.87278 -12.59169 -12.50821 -12.39770 -11.95156 -11.72824 -11.62850 -11.29142 -10.86401 -10.80012 -10.59157 -10.52444 -10.19283 -10.08913 -9.82523 -9.75232 -9.59161 -9.41033 -9.32159 -8.82569 -8.81801 -8.62976 -8.38054 -6.95228 -5.78742 -3.06986 0.57952 1.02342 1.76752 2.50380 3.30208 3.38334 3.41887 3.46842 3.47773 3.83420 3.94146 4.27100 4.55082 4.57684 4.61107 4.67804 4.85750 4.89571 5.08848 5.14029 5.18525 5.20040 5.31252 5.33340 5.44358 5.50310 5.74675 5.78166 5.87373 5.94020 6.01846 6.02631 6.06037 6.11614 6.17051 6.28927 6.34219 6.48619 6.53915 6.59758 6.62835 6.75065 6.86771 6.93666 7.00124 7.15230 7.67537 7.79898 7.92166 8.40093 8.54969 9.51452 10.09750 10.44468 11.43432 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002463 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.733405 B =11364.493406 C =11945.078173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.708 5.708 10 C 0.192 3.808 11 H 0.074 0.926 12 C -0.175 4.175 13 C 0.133 3.867 14 H 0.096 0.904 15 N -0.704 5.704 16 C 0.585 3.415 17 O -0.524 6.524 18 C -0.208 4.208 19 C 0.122 3.878 20 N -0.573 5.573 21 H 0.422 0.578 22 C 0.032 3.968 23 C -0.079 4.079 24 C -0.160 4.160 25 C 0.096 3.904 26 N -0.431 5.431 27 C 0.139 3.861 28 C -0.121 4.121 29 C -0.110 4.110 30 C -0.131 4.131 31 C -0.125 4.125 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.394 0.606 37 H 0.188 0.812 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.901 -21.759 -4.206 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.347 5.347 10 C 0.080 3.920 11 H 0.092 0.908 12 C -0.217 4.217 13 C 0.028 3.972 14 H 0.114 0.886 15 N -0.354 5.354 16 C 0.372 3.628 17 O -0.400 6.400 18 C -0.220 4.220 19 C -0.012 4.012 20 N -0.175 5.175 21 H 0.261 0.739 22 C -0.076 4.076 23 C -0.108 4.108 24 C -0.181 4.181 25 C -0.070 4.070 26 N -0.138 5.138 27 C 0.005 3.995 28 C -0.124 4.124 29 C -0.148 4.148 30 C -0.169 4.169 31 C -0.163 4.163 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.205 0.795 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.715 -21.690 -3.285 25.872 hybrid contribution 1.768 1.032 -0.965 2.264 sum 15.483 -20.657 -4.250 26.164 Atomic orbital electron populations 1.69638 1.05068 1.25835 1.57338 1.24735 0.95489 0.97658 1.02868 0.86295 0.78553 0.83695 0.77775 1.21354 1.21725 1.21298 1.19220 0.90951 0.84235 1.43034 0.91299 1.42394 1.05921 0.99558 1.86790 1.21278 0.94185 0.84522 0.92057 0.90775 1.24273 1.01946 0.95580 0.99929 1.21667 0.85103 0.93401 0.97036 0.88592 1.45408 1.22373 1.24765 1.42874 1.17071 0.84397 0.80047 0.81304 1.90830 1.52752 1.64084 1.32311 1.20059 0.98649 0.98500 1.04752 1.22272 0.86411 0.94860 0.97703 1.41346 1.20131 1.20531 1.35535 0.73938 1.19110 0.98736 0.93061 0.96651 1.20497 0.99538 0.92178 0.98606 1.21906 0.97923 1.00536 0.97733 1.22789 0.91487 0.94026 0.98717 1.67152 1.33361 1.01924 1.11329 1.19498 0.90841 0.94648 0.94549 1.23584 0.97656 0.98091 0.93063 1.22448 0.93945 1.01639 0.96750 1.22739 0.96621 1.01367 0.96141 1.22634 0.98434 0.99221 0.95995 0.93407 0.77681 0.89649 0.92292 0.77239 0.79484 0.84886 0.84208 0.82328 0.90753 0.90316 0.89240 0.92577 0.91900 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.71 -16.90 5.32 -52.99 -0.28 -17.18 16 10 C 0.19 3.62 4.27 -67.48 -0.29 3.33 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.17 -3.17 7.68 -25.75 -0.20 -3.37 16 13 C 0.13 2.12 4.12 -67.48 -0.28 1.85 16 14 H 0.10 1.68 7.46 -51.93 -0.39 1.29 16 15 N -0.70 -9.54 5.04 -54.60 -0.27 -9.82 16 16 C 0.58 9.19 7.80 -12.74 -0.10 9.09 16 17 O -0.52 -10.60 16.56 5.22 0.09 -10.51 16 18 C -0.21 -2.67 6.27 -103.28 -0.65 -3.32 16 19 C 0.12 0.95 11.33 -16.63 -0.19 0.77 16 20 N -0.57 -3.73 5.98 -10.46 -0.06 -3.80 16 21 H 0.42 1.11 8.96 -40.82 -0.37 0.75 16 22 C 0.03 0.31 7.27 -83.94 -0.61 -0.30 16 23 C -0.08 -0.58 10.19 -39.18 -0.40 -0.98 16 24 C -0.16 -1.18 10.09 -39.41 -0.40 -1.58 16 25 C 0.10 0.98 11.16 -17.50 -0.20 0.79 16 26 N -0.43 -6.31 10.41 -9.70 -0.10 -6.42 16 27 C 0.14 1.89 7.35 -82.92 -0.61 1.28 16 28 C -0.12 -1.93 0.92 -154.71 -0.14 -2.07 16 29 C -0.11 -1.78 7.47 -26.28 -0.20 -1.97 16 30 C -0.13 -2.02 8.08 -25.75 -0.21 -2.23 16 31 C -0.13 -1.74 7.49 -26.28 -0.20 -1.94 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.39 9.85 5.92 -40.82 -0.24 9.60 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.39 4.18 7.49 -40.82 -0.31 3.87 16 37 H 0.19 0.74 7.38 -52.49 -0.39 0.35 16 38 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.46 6.42 -51.93 -0.33 1.13 16 43 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -36.52 383.25 -10.27 -46.80 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.22 Total: 12.67 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.90 Total: -7.73 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 0.00 Total: -63.94 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.52 -10.27 -46.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078785177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.435 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds