Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99418 * 2 1 4 4 H 1.48496 * 109.46955 * 239.99706 * 3 2 1 5 5 H 1.48493 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47040 * 120.00058 * 3 2 1 7 7 C 1.38809 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00069 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.94934 * 336.40529 * 10 9 7 12 12 C 1.53954 * 113.66346 * 107.81408 * 10 9 7 13 13 C 1.53943 * 87.29746 * 139.20539 * 12 10 9 14 14 H 1.09000 * 113.75120 * 220.78154 * 13 12 10 15 15 N 1.46506 * 113.66557 * 89.73639 * 13 12 10 16 16 C 1.34775 * 119.99693 * 107.81012 * 15 13 12 17 17 O 1.21663 * 120.00500 * 0.02562 * 16 15 13 18 18 C 1.46936 * 119.99862 * 180.02562 * 16 15 13 19 19 C 1.36477 * 126.72193 * 359.69229 * 18 16 15 20 20 N 1.35362 * 109.77170 * 179.82885 * 19 18 16 21 21 H 0.96998 * 124.82583 * 180.18143 * 20 19 18 22 22 C 1.37859 * 110.34989 * 0.44808 * 20 19 18 23 23 C 1.39227 * 133.47923 * 179.69358 * 22 20 19 24 24 C 1.38335 * 118.30198 * 180.02562 * 23 22 20 25 25 C 1.38605 * 119.64199 * 0.02562 * 24 23 22 26 26 N 1.31627 * 121.19119 * 359.96187 * 25 24 23 27 27 C 1.32698 * 121.42745 * 0.07265 * 26 25 24 28 28 C 1.52907 * 86.78215 * 335.26517 * 13 12 10 29 29 C 1.52907 * 121.13663 * 259.17980 * 28 13 12 30 30 C 1.53957 * 86.78221 * 209.37875 * 29 28 13 31 31 C 1.52910 * 121.13865 * 150.61940 * 28 13 12 32 32 H 0.97001 * 120.00652 * 359.97438 * 1 2 3 33 33 H 0.97000 * 119.99967 * 359.97438 * 9 7 2 34 34 H 1.08998 * 113.58085 * 24.59642 * 12 10 9 35 35 H 1.09006 * 113.57333 * 253.81058 * 12 10 9 36 36 H 0.97000 * 120.00117 * 287.81364 * 15 13 12 37 37 H 1.07998 * 125.11457 * 359.96198 * 19 18 16 38 38 H 1.08004 * 120.84985 * 0.06445 * 23 22 20 39 39 H 1.08000 * 120.18121 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.40593 * 180.02562 * 25 24 23 41 41 H 1.08999 * 113.66650 * 323.85154 * 29 28 13 42 42 H 1.09002 * 113.66061 * 94.91304 * 29 28 13 43 43 H 1.08996 * 113.58056 * 270.12744 * 30 29 28 44 44 H 1.09006 * 113.64746 * 139.34776 * 30 29 28 45 45 H 1.09005 * 113.66392 * 265.09466 * 31 28 13 46 46 H 1.09005 * 113.66432 * 36.05373 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0674 -3.5648 -0.4012 12 6 1.9937 -4.4075 1.3430 13 6 1.8254 -5.7023 0.5275 14 1 1.0948 -6.3937 0.9473 15 7 3.0937 -6.3516 0.1865 16 6 3.4516 -7.4960 0.8019 17 8 2.7214 -7.9902 1.6402 18 6 4.7239 -8.1469 0.4603 19 6 5.6391 -7.7187 -0.4570 20 7 6.6868 -8.5752 -0.4928 21 1 7.4626 -8.4777 -1.0668 22 6 6.4916 -9.6088 0.3983 23 6 7.2405 -10.7307 0.7430 24 6 6.7342 -11.5873 1.7041 25 6 5.5097 -11.3111 2.2918 26 7 4.8159 -10.2451 1.9531 27 6 5.2586 -9.3940 1.0363 28 6 1.2659 -4.8229 -0.5913 29 6 -0.2399 -4.7137 -0.8330 30 6 0.1036 -4.4615 -2.3125 31 6 1.4200 -5.2188 -2.0602 32 1 -0.4851 0.8400 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 1.1200 -4.1534 1.9431 35 1 2.9237 -4.3672 1.9103 36 1 3.6758 -5.9578 -0.4820 37 1 5.5431 -6.8291 -1.0618 38 1 8.1927 -10.9269 0.2726 39 1 7.2900 -12.4664 1.9949 40 1 5.1182 -11.9822 3.0420 41 1 -0.7792 -5.6454 -0.6619 42 1 -0.7014 -3.8586 -0.3392 43 1 0.2458 -3.4081 -2.5536 44 1 -0.5644 -4.9683 -3.0090 45 1 2.2846 -4.7672 -2.5466 46 1 1.3489 -6.2926 -2.2337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078785177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = 70.073383 kcal Electronic energy + Delta-G solvation = -28878.892635 eV Core-core repulsion = 24962.737562 eV Total energy + Delta-G solvation = -3916.155072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66683 -41.79224 -39.73991 -38.81739 -36.30370 -35.68949 -33.99144 -33.54026 -31.87756 -31.04914 -30.27990 -26.70239 -26.54401 -25.48556 -24.81291 -24.61876 -23.44187 -23.29377 -21.58306 -20.70869 -19.61015 -19.33621 -18.57948 -17.90135 -17.52651 -17.07921 -16.87107 -16.60748 -16.34114 -16.23865 -15.77776 -15.60617 -15.39137 -15.22036 -14.74835 -14.16334 -13.97276 -13.84791 -13.70501 -13.57447 -13.40567 -13.29450 -13.21571 -13.12740 -12.82792 -12.71552 -12.45619 -12.17315 -11.87520 -11.83256 -11.28385 -11.24951 -11.17461 -10.91004 -10.84654 -10.64012 -10.17679 -9.87013 -9.49605 -9.15946 -8.91825 -7.89894 -5.17295 -0.06058 0.31956 1.00917 1.49105 1.51717 1.57470 1.93956 2.20427 2.40532 2.59314 3.02614 3.31738 3.40869 3.53979 3.67099 3.74408 3.81818 3.86092 3.99668 4.02387 4.05711 4.14489 4.17060 4.31393 4.34857 4.47022 4.60559 4.65857 4.70550 4.75634 4.80832 4.91852 4.96135 5.07963 5.13256 5.15807 5.16972 5.22504 5.25134 5.32041 5.35488 5.53382 5.64130 5.67777 5.75716 5.88769 6.31645 6.45196 6.74762 7.21462 7.38653 7.44057 8.16416 8.39502 9.33154 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002463 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.733405 B =11364.493406 C =11945.078173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.301 1.301 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.089 0.911 12 C -0.176 4.176 13 C 0.150 3.850 14 H 0.078 0.922 15 N -0.688 5.688 16 C 0.585 3.415 17 O -0.585 6.585 18 C -0.269 4.269 19 C 0.168 3.832 20 N -0.548 5.548 21 H 0.446 0.554 22 C 0.025 3.975 23 C -0.069 4.069 24 C -0.156 4.156 25 C 0.081 3.919 26 N -0.497 5.497 27 C 0.095 3.905 28 C -0.111 4.111 29 C -0.116 4.116 30 C -0.129 4.129 31 C -0.106 4.106 32 H 0.249 0.751 33 H 0.376 0.624 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.412 0.588 37 H 0.233 0.767 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.991 -23.265 -6.673 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.209 1.209 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.074 3.926 11 H 0.107 0.893 12 C -0.218 4.218 13 C 0.044 3.956 14 H 0.097 0.903 15 N -0.339 5.339 16 C 0.375 3.625 17 O -0.465 6.465 18 C -0.281 4.281 19 C 0.031 3.969 20 N -0.152 5.152 21 H 0.289 0.711 22 C -0.083 4.083 23 C -0.097 4.097 24 C -0.176 4.176 25 C -0.084 4.084 26 N -0.206 5.206 27 C -0.038 4.038 28 C -0.113 4.113 29 C -0.154 4.154 30 C -0.167 4.167 31 C -0.143 4.143 32 H 0.058 0.942 33 H 0.210 0.790 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.189 0.811 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.915 -23.235 -5.799 29.907 hybrid contribution 0.583 1.360 -0.147 1.487 sum 18.498 -21.875 -5.946 29.258 Atomic orbital electron populations 1.69809 1.06590 1.25908 1.59699 1.25515 0.96268 1.00948 1.04092 0.85272 0.77170 0.79555 0.78113 1.20063 1.22723 1.20851 1.19656 0.91554 0.85237 1.40593 0.90310 1.42566 1.05619 1.00637 1.86973 1.21547 0.94924 0.83365 0.92787 0.89304 1.24160 1.00837 0.97222 0.99561 1.21310 0.86007 0.92069 0.96248 0.90344 1.45165 1.21593 1.24189 1.42951 1.17561 0.84967 0.79794 0.80172 1.90787 1.54880 1.65758 1.35124 1.19916 0.99205 1.00189 1.08754 1.22797 0.84526 0.94732 0.94877 1.41348 1.20320 1.19022 1.34470 0.71123 1.19240 0.97754 0.94364 0.96953 1.21034 1.00423 0.90603 0.97626 1.22295 0.96779 1.01603 0.96966 1.23234 0.92696 0.93331 0.99168 1.67053 1.35961 1.04008 1.13563 1.19914 0.92999 0.95290 0.95634 1.23334 0.97170 0.96049 0.94767 1.22518 0.94189 1.01201 0.97510 1.22645 0.98255 1.00099 0.95657 1.22596 0.98017 1.00375 0.93337 0.94230 0.79018 0.91913 0.92547 0.75121 0.75044 0.80667 0.80409 0.81111 0.89020 0.93471 0.92216 0.90354 0.90351 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.52 29.55 68.60 2.03 47.54 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.24 -12.80 9.97 84.03 0.84 -11.96 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.04 5.32 -321.56 -1.71 -36.75 16 10 C 0.18 6.89 4.27 45.28 0.19 7.08 16 11 H 0.09 3.06 8.10 -2.38 -0.02 3.04 16 12 C -0.18 -6.54 7.68 31.23 0.24 -6.30 16 13 C 0.15 4.81 4.12 45.28 0.19 4.99 16 14 H 0.08 2.85 7.46 -2.39 -0.02 2.83 16 15 N -0.69 -17.94 5.04 -444.88 -2.24 -20.18 16 16 C 0.59 18.66 7.80 86.52 0.67 19.33 16 17 O -0.59 -25.16 16.56 -4.23 -0.07 -25.23 16 18 C -0.27 -6.71 6.27 -19.00 -0.12 -6.83 16 19 C 0.17 2.01 11.33 83.74 0.95 2.96 16 20 N -0.55 -4.83 5.98 -187.01 -1.12 -5.95 16 21 H 0.45 -0.11 8.96 -92.71 -0.83 -0.94 16 22 C 0.02 0.41 7.27 38.98 0.28 0.69 16 23 C -0.07 -0.75 10.19 22.53 0.23 -0.52 16 24 C -0.16 -1.89 10.09 22.38 0.23 -1.66 16 25 C 0.08 1.66 11.16 84.81 0.95 2.60 16 26 N -0.50 -15.27 10.41 -184.62 -1.92 -17.19 16 27 C 0.09 2.58 7.35 41.98 0.31 2.89 16 28 C -0.11 -3.45 0.92 -52.31 -0.05 -3.49 16 29 C -0.12 -3.79 7.47 30.89 0.23 -3.56 16 30 C -0.13 -3.83 8.08 31.23 0.25 -3.57 16 31 C -0.11 -2.65 7.49 30.88 0.23 -2.42 16 32 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.38 19.95 5.92 -92.71 -0.55 19.40 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.41 7.51 7.49 -92.71 -0.69 6.81 16 37 H 0.23 0.48 7.38 -2.91 -0.02 0.45 16 38 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 39 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.05 1.84 6.42 -2.39 -0.02 1.83 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -87.50 383.25 0.31 -87.19 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -1.03 Total: 32.80 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.09 Total: -3.60 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -6.71 Total: -138.71 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.07 Total: -25.23 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -87.50 0.31 -87.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078785177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.268 kcal (2) G-P(sol) polarization free energy of solvation -87.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds