Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00258 * 2 1 4 4 H 1.48501 * 109.47491 * 270.00533 * 3 2 1 5 5 H 1.48498 * 109.47184 * 30.00629 * 3 2 1 6 6 H 1.48504 * 109.47122 * 150.00527 * 3 2 1 7 7 C 1.38813 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99668 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00441 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.89283 * 23.65316 * 10 9 7 12 12 C 1.53950 * 113.74532 * 252.22536 * 10 9 7 13 13 C 1.53947 * 87.29698 * 270.24989 * 12 10 9 14 14 H 1.08996 * 113.74521 * 89.75326 * 13 12 10 15 15 N 1.46504 * 113.66091 * 220.79537 * 13 12 10 16 16 C 1.34777 * 119.99854 * 252.18385 * 15 13 12 17 17 O 1.21673 * 120.00005 * 0.02562 * 16 15 13 18 18 C 1.46928 * 120.00255 * 180.27679 * 16 15 13 19 19 C 1.36481 * 126.72223 * 359.75442 * 18 16 15 20 20 N 1.35365 * 109.77499 * 179.97438 * 19 18 16 21 21 H 0.96999 * 124.82391 * 180.02562 * 20 19 18 22 22 C 1.37867 * 110.34814 * 0.02562 * 20 19 18 23 23 C 1.39222 * 133.47500 * 180.02562 * 22 20 19 24 24 C 1.38333 * 118.29909 * 179.97438 * 23 22 20 25 25 C 1.38596 * 119.64071 * 0.02562 * 24 23 22 26 26 N 1.31623 * 121.19845 * 0.02562 * 25 24 23 27 27 C 1.32703 * 121.42476 * 359.67058 * 26 25 24 28 28 C 1.52903 * 86.78280 * 335.26435 * 13 12 10 29 29 C 1.52905 * 121.14191 * 259.17852 * 28 13 12 30 30 C 1.53949 * 86.78469 * 209.38313 * 29 28 13 31 31 C 1.52911 * 121.13748 * 150.61437 * 28 13 12 32 32 H 0.97006 * 119.99751 * 359.97438 * 1 2 3 33 33 H 0.96996 * 119.99678 * 359.97438 * 9 7 2 34 34 H 1.09005 * 113.57972 * 155.64519 * 12 10 9 35 35 H 1.08993 * 113.58251 * 24.85651 * 12 10 9 36 36 H 0.97000 * 120.00410 * 72.19110 * 15 13 12 37 37 H 1.07998 * 125.11775 * 359.97438 * 19 18 16 38 38 H 1.08001 * 120.84944 * 359.97119 * 23 22 20 39 39 H 1.07998 * 120.17999 * 179.97438 * 24 23 22 40 40 H 1.08005 * 119.40035 * 179.97438 * 25 24 23 41 41 H 1.09006 * 113.66016 * 323.85329 * 29 28 13 42 42 H 1.08998 * 113.66527 * 94.90517 * 29 28 13 43 43 H 1.08999 * 113.57537 * 270.12832 * 30 29 28 44 44 H 1.09003 * 113.58139 * 139.33657 * 30 29 28 45 45 H 1.08999 * 113.66479 * 265.09473 * 31 28 13 46 46 H 1.09007 * 113.66131 * 36.15254 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1119 -2.4710 -0.0011 11 1 3.5272 -3.2981 -0.4035 12 6 4.7950 -2.7925 1.3406 13 6 6.0284 -2.0396 0.8099 14 1 6.0242 -0.9739 1.0387 15 7 7.3000 -2.6881 1.1396 16 6 8.1131 -2.1446 2.0670 17 8 7.7908 -1.1155 2.6306 18 6 9.3912 -2.7916 2.3934 19 6 9.8863 -3.9412 1.8492 20 7 11.0904 -4.2261 2.3982 21 1 11.6356 -4.9950 2.1691 22 6 11.4316 -3.2682 3.3292 23 6 12.5346 -3.0896 4.1596 24 6 12.5549 -1.9871 4.9950 25 6 11.4903 -1.0998 4.9849 26 7 10.4552 -1.2858 4.1933 27 6 10.3917 -2.3245 3.3698 28 6 5.5179 -2.3681 -0.5935 29 6 6.1197 -3.5155 -1.4054 30 6 5.7511 -2.7050 -2.6614 31 6 5.8113 -1.4460 -1.7775 32 1 -0.4850 0.8401 0.0004 33 1 3.8645 -0.3622 -0.0014 34 1 4.9682 -3.8572 1.4977 35 1 4.3240 -2.3091 2.1965 36 1 7.5568 -3.5086 0.6905 37 1 9.3919 -4.5343 1.0942 38 1 13.3535 -3.7937 4.1519 39 1 13.3954 -1.8192 5.6521 40 1 11.5099 -0.2406 5.6389 41 1 7.1935 -3.6364 -1.2624 42 1 5.5704 -4.4524 -1.3125 43 1 4.7536 -2.9224 -3.0432 44 1 6.5166 -2.7304 -3.4369 45 1 5.0156 -0.7296 -1.9819 46 1 6.7985 -0.9853 -1.7391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078785180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = 100.992008 kcal Electronic energy + Delta-G solvation = -29004.409436 eV Core-core repulsion = 25089.595096 eV Total energy + Delta-G solvation = -3914.814340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00711 -40.57626 -38.64297 -38.07846 -35.12157 -34.04911 -33.12351 -32.32889 -30.65734 -30.21171 -29.54809 -25.62637 -25.02102 -24.21658 -24.11821 -23.19359 -22.80912 -21.83579 -20.36224 -19.74765 -18.77406 -18.15716 -17.29305 -17.08856 -16.64667 -16.29048 -15.85922 -15.50946 -15.14571 -15.13181 -14.80997 -14.31443 -14.17663 -13.77829 -13.44831 -13.19576 -12.94173 -12.90667 -12.66087 -12.59836 -12.55004 -12.25405 -12.03723 -11.92740 -11.44960 -10.96754 -10.86544 -10.80158 -10.59183 -10.20198 -10.08084 -9.84421 -9.75573 -9.58788 -9.53908 -9.36895 -8.85597 -8.85159 -8.66099 -8.42021 -7.26332 -5.75840 -3.11924 0.54416 0.99679 1.72989 2.45286 3.32654 3.36319 3.42817 3.49184 3.51376 3.81045 3.90089 4.22706 4.51841 4.57934 4.61832 4.63633 4.64586 4.77869 4.84144 4.90804 5.09939 5.15043 5.16782 5.25330 5.39556 5.42694 5.59487 5.65214 5.75687 5.80245 5.84931 5.87171 5.92861 5.98179 5.99103 6.06092 6.19335 6.36375 6.45916 6.50947 6.62264 6.65344 6.69926 6.80556 6.82364 7.02952 7.76008 7.90450 8.00976 8.43640 8.53388 9.21350 9.93931 10.12745 11.41998 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.002764 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.410815 B =10128.112870 C =11210.208290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.725 5.725 10 C 0.203 3.797 11 H 0.076 0.924 12 C -0.180 4.180 13 C 0.140 3.860 14 H 0.112 0.888 15 N -0.716 5.716 16 C 0.580 3.420 17 O -0.519 6.519 18 C -0.206 4.206 19 C 0.118 3.882 20 N -0.574 5.574 21 H 0.422 0.578 22 C 0.032 3.968 23 C -0.080 4.080 24 C -0.159 4.159 25 C 0.097 3.903 26 N -0.430 5.430 27 C 0.138 3.862 28 C -0.127 4.127 29 C -0.113 4.113 30 C -0.133 4.133 31 C -0.129 4.129 32 H 0.260 0.740 33 H 0.364 0.636 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.391 0.609 37 H 0.186 0.814 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.221 -13.359 2.597 32.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.364 5.364 10 C 0.090 3.910 11 H 0.094 0.906 12 C -0.223 4.223 13 C 0.036 3.964 14 H 0.129 0.871 15 N -0.367 5.367 16 C 0.366 3.634 17 O -0.394 6.394 18 C -0.218 4.218 19 C -0.016 4.016 20 N -0.176 5.176 21 H 0.260 0.740 22 C -0.076 4.076 23 C -0.109 4.109 24 C -0.180 4.180 25 C -0.069 4.069 26 N -0.137 5.137 27 C 0.004 3.996 28 C -0.130 4.130 29 C -0.151 4.151 30 C -0.170 4.170 31 C -0.166 4.166 32 H 0.070 0.930 33 H 0.198 0.802 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.225 0.775 37 H 0.203 0.797 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 28.005 -12.126 2.954 30.660 hybrid contribution 1.789 -0.192 -0.214 1.811 sum 29.794 -12.318 2.740 32.356 Atomic orbital electron populations 1.69693 1.05107 1.25909 1.57147 1.24641 0.95205 0.97177 1.01706 0.86639 0.79625 0.85068 0.77880 1.20980 1.21609 1.19929 1.19061 0.80226 0.94793 1.43469 0.89010 1.42458 1.03905 1.01548 1.88516 1.20569 0.88218 0.90143 0.92039 0.90559 1.24260 0.96862 0.99387 1.01747 1.22379 0.80714 0.98413 0.94865 0.87063 1.45850 1.21111 1.28265 1.41446 1.17163 0.82262 0.84245 0.79691 1.90865 1.74298 1.23243 1.51023 1.20126 0.97979 0.99039 1.04627 1.22198 0.85811 0.96194 0.97418 1.41324 1.18265 1.23675 1.34339 0.74002 1.19108 0.98724 0.93122 0.96599 1.20491 0.95906 0.99006 0.95473 1.21916 1.00706 0.95193 1.00179 1.22809 0.88735 0.98919 0.96473 1.67165 1.24627 1.18651 1.03240 1.19517 0.92592 0.91281 0.96230 1.23648 0.99417 0.97674 0.92245 1.22504 0.99562 0.96914 0.96137 1.22738 1.01671 0.96824 0.95766 1.22659 1.01497 0.96952 0.95531 0.92999 0.80244 0.90853 0.90744 0.77508 0.79684 0.84877 0.84158 0.82273 0.90743 0.91178 0.89818 0.92210 0.90454 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.97 55.49 0.78 -28.57 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 22.63 27.73 -169.99 -4.71 17.92 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.84 6.52 56.52 0.37 -6.47 16 7 C -0.25 -6.88 10.45 -15.06 -0.16 -7.03 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 9 N -0.72 -17.02 4.66 -52.99 -0.25 -17.26 16 10 C 0.20 3.80 4.36 -67.48 -0.29 3.50 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.18 -3.11 7.68 -25.75 -0.20 -3.31 16 13 C 0.14 2.28 4.04 -67.48 -0.27 2.01 16 14 H 0.11 2.21 7.46 -51.93 -0.39 1.82 16 15 N -0.72 -9.39 5.24 -54.60 -0.29 -9.68 16 16 C 0.58 9.24 7.80 -12.74 -0.10 9.14 16 17 O -0.52 -11.02 16.56 5.21 0.09 -10.93 16 18 C -0.21 -2.61 6.27 -103.28 -0.65 -3.26 16 19 C 0.12 0.84 11.33 -16.63 -0.19 0.66 16 20 N -0.57 -3.43 5.98 -10.46 -0.06 -3.49 16 21 H 0.42 0.83 8.96 -40.82 -0.37 0.46 16 22 C 0.03 0.30 7.27 -83.94 -0.61 -0.31 16 23 C -0.08 -0.58 10.19 -39.18 -0.40 -0.98 16 24 C -0.16 -1.18 10.09 -39.41 -0.40 -1.58 16 25 C 0.10 1.02 11.16 -17.51 -0.20 0.82 16 26 N -0.43 -6.46 10.41 -9.70 -0.10 -6.56 16 27 C 0.14 1.89 7.35 -82.91 -0.61 1.28 16 28 C -0.13 -1.90 0.92 -154.72 -0.14 -2.04 16 29 C -0.11 -1.26 7.15 -26.29 -0.19 -1.45 16 30 C -0.13 -1.65 8.08 -25.75 -0.21 -1.85 16 31 C -0.13 -1.93 7.62 -26.28 -0.20 -2.13 16 32 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 33 H 0.36 8.66 5.47 -40.82 -0.22 8.43 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.39 3.59 5.91 -40.82 -0.24 3.35 16 37 H 0.19 0.51 7.38 -52.49 -0.39 0.12 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.07 0.65 7.03 -51.93 -0.36 0.29 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 46 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -38.89 379.84 -9.91 -48.80 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.18 Total: 10.41 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.90 Total: -6.36 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.08 Total: -65.56 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.89 -9.91 -48.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078785180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.795 kcal (2) G-P(sol) polarization free energy of solvation -38.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds