Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00036 * 2 1 4 4 O 1.21281 * 120.00220 * 179.72597 * 3 2 1 5 5 C 1.50706 * 120.00080 * 359.72107 * 3 2 1 6 6 S 1.80989 * 109.47203 * 180.02562 * 5 3 2 7 7 C 1.76206 * 100.00010 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99621 * 359.97438 * 7 6 5 9 9 C 1.38794 * 119.99924 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00193 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99992 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46975 * 89.99621 * 11 9 7 13 13 H 1.48497 * 109.47172 * 209.99845 * 11 9 7 14 14 H 1.48497 * 109.46742 * 329.99999 * 11 9 7 15 15 C 1.46506 * 119.99936 * 179.71965 * 2 1 3 16 16 H 1.09002 * 109.48760 * 180.02562 * 15 2 1 17 17 C 1.52566 * 109.48642 * 60.00326 * 15 2 1 18 18 C 1.47093 * 114.32159 * 155.01924 * 17 15 2 19 19 C 1.54866 * 110.32506 * 62.80402 * 18 17 15 20 20 N 1.44579 * 109.59832 * 288.73127 * 19 18 17 21 21 C 1.34773 * 118.64190 * 270.72824 * 20 19 18 22 22 O 1.21280 * 119.99956 * 180.02562 * 21 20 19 23 23 C 1.50702 * 120.00085 * 359.97438 * 21 20 19 24 24 C 1.53000 * 117.49811 * 248.62401 * 23 21 20 25 25 C 1.52999 * 60.00282 * 252.51344 * 24 23 21 26 26 C 1.47605 * 122.71538 * 90.70164 * 20 19 18 27 27 C 1.50877 * 109.49152 * 300.11566 * 15 2 1 28 28 H 1.09003 * 109.47269 * 270.27384 * 1 2 3 29 29 H 1.08994 * 109.47173 * 30.28203 * 1 2 3 30 30 H 1.09005 * 109.47077 * 150.28374 * 1 2 3 31 31 H 1.09004 * 109.46762 * 300.00389 * 5 3 2 32 32 H 1.08998 * 109.46924 * 59.99727 * 5 3 2 33 33 H 0.97004 * 119.99966 * 180.02562 * 10 9 7 34 34 H 1.08999 * 108.51334 * 276.26713 * 17 15 2 35 35 H 1.08999 * 108.51772 * 33.92277 * 17 15 2 36 36 H 1.09013 * 109.32575 * 183.06037 * 18 17 15 37 37 H 1.09001 * 109.33188 * 302.53723 * 18 17 15 38 38 H 1.08996 * 109.44857 * 48.76968 * 19 18 17 39 39 H 1.09003 * 109.44893 * 168.71759 * 19 18 17 40 40 H 1.08997 * 115.54927 * 34.33616 * 23 21 20 41 41 H 1.08996 * 117.50503 * 0.02562 * 24 23 21 42 42 H 1.09003 * 117.49338 * 145.02178 * 24 23 21 43 43 H 1.09000 * 117.49775 * 252.51756 * 25 24 23 44 44 H 1.08997 * 117.50258 * 107.49112 * 25 24 23 45 45 H 1.08999 * 108.94831 * 78.57051 * 26 20 19 46 46 H 1.08997 * 108.94999 * 197.29507 * 26 20 19 47 47 H 1.09000 * 109.36735 * 332.04278 * 27 15 2 48 48 H 1.09002 * 109.36314 * 91.65958 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0050 5 6 1.3854 2.4723 -0.0064 6 16 2.5615 3.8480 -0.0055 7 6 1.4414 5.2082 -0.0126 8 1 0.3761 5.0304 -0.0163 9 6 1.9281 6.5080 -0.0146 10 7 3.2265 6.7246 -0.0105 11 14 0.7407 7.9500 -0.0228 12 1 0.4210 8.3360 1.3751 13 1 1.3645 9.1009 -0.7238 14 1 -0.5074 7.5593 -0.7262 15 6 2.1975 -1.2688 0.0062 16 1 3.2692 -1.0699 0.0057 17 6 1.8292 -2.0751 -1.2355 18 6 2.8557 -3.0405 -1.6574 19 6 3.0740 -4.1087 -0.5575 20 7 3.7530 -3.5114 0.5706 21 6 5.1006 -3.5120 0.5878 22 8 5.6954 -3.0181 1.5222 23 6 5.8685 -4.1274 -0.5536 24 6 6.6460 -5.4141 -0.2695 25 6 7.3962 -4.0967 -0.4751 26 6 3.0312 -2.9006 1.7040 27 6 1.8312 -2.0555 1.2404 28 1 -0.3634 0.0049 1.0277 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8926 -0.5094 31 1 0.7624 2.5278 -0.8991 32 1 0.7550 2.5322 0.8808 33 1 3.5666 7.6330 -0.0115 34 1 0.9056 -2.6179 -1.0343 35 1 1.6502 -1.3823 -2.0577 36 1 2.5344 -3.5300 -2.5769 37 1 3.7926 -2.5142 -1.8402 38 1 2.1092 -4.4998 -0.2349 39 1 3.6803 -4.9219 -0.9566 40 1 5.4128 -4.0212 -1.5381 41 1 6.6018 -5.8158 0.7428 42 1 6.7018 -6.1549 -1.0672 43 1 7.9455 -3.9706 -1.4081 44 1 7.8459 -3.6313 0.4019 45 1 2.6731 -3.6915 2.3631 46 1 3.7188 -2.2622 2.2588 47 1 1.5447 -1.3676 2.0358 48 1 0.9917 -2.7130 1.0139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078836154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -63.768709 kcal Electronic energy + Delta-G solvation = -28025.098829 eV Core-core repulsion = 24206.291128 eV Total energy + Delta-G solvation = -3818.807701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81238 -40.87364 -38.89203 -37.12389 -36.62145 -34.61031 -34.18348 -33.49336 -30.70956 -28.20177 -27.73225 -27.38169 -26.51837 -25.13096 -23.34099 -22.20278 -21.83253 -20.49766 -19.76509 -19.56030 -18.55633 -18.08024 -17.60313 -17.15809 -16.90321 -16.75555 -16.38599 -15.96292 -15.82687 -15.54857 -15.21855 -14.85514 -14.58116 -14.47113 -14.25179 -14.06189 -13.85336 -13.57703 -13.41943 -13.29022 -13.20041 -13.11523 -12.90880 -12.69985 -12.62755 -12.47399 -12.27949 -11.99450 -11.79407 -11.71466 -11.60737 -11.51382 -11.41703 -11.16450 -10.87317 -10.84300 -10.29248 -9.76437 -9.61120 -8.71551 -8.36524 -6.16172 1.23150 1.41243 1.41724 1.44011 1.54483 1.55114 1.96146 2.08037 2.25431 2.88631 2.97455 3.24183 3.43262 3.60132 3.78706 3.80075 3.84563 3.94617 3.96520 4.06517 4.08547 4.16651 4.19224 4.28166 4.35730 4.43303 4.47155 4.58594 4.68325 4.68989 4.71453 4.79709 4.83695 4.88187 4.91468 4.97716 5.01262 5.09789 5.12045 5.20016 5.27103 5.35984 5.38952 5.61532 5.63050 6.17455 6.27011 6.35598 7.04038 7.13728 7.14113 8.72960 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.002481 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.762803 B =11284.993711 C =12126.108818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.526 3.474 4 O -0.572 6.572 5 C -0.119 4.119 6 S -0.162 6.162 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.011 3.989 10 N -0.913 5.913 11 Si 1.002 2.998 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.255 1.255 15 C 0.140 3.860 16 H 0.051 0.949 17 C -0.121 4.121 18 C -0.135 4.135 19 C 0.105 3.895 20 N -0.599 5.599 21 C 0.525 3.475 22 O -0.596 6.596 23 C -0.202 4.202 24 C -0.124 4.124 25 C -0.168 4.168 26 C 0.115 3.885 27 C -0.127 4.127 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.271 0.729 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 -30.912 -4.410 32.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C 0.313 3.687 4 O -0.451 6.451 5 C -0.270 4.270 6 S 0.065 5.935 7 C -0.691 4.691 8 H 0.102 0.898 9 C -0.194 4.194 10 N -0.550 5.550 11 Si 0.823 3.177 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.179 1.179 15 C 0.037 3.963 16 H 0.070 0.930 17 C -0.159 4.159 18 C -0.174 4.174 19 C -0.017 4.017 20 N -0.330 5.330 21 C 0.315 3.685 22 O -0.478 6.478 23 C -0.223 4.223 24 C -0.161 4.161 25 C -0.205 4.205 26 C -0.008 4.008 27 C -0.166 4.166 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.057 0.943 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.167 0.833 41 H 0.108 0.892 42 H 0.158 0.842 43 H 0.141 0.859 44 H 0.094 0.906 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.152 -30.563 -3.919 31.421 hybrid contribution -1.278 1.776 0.319 2.211 sum -7.430 -28.787 -3.599 29.948 Atomic orbital electron populations 1.22096 0.76778 1.04966 1.03405 1.48011 1.08513 1.04249 1.73157 1.20269 0.87273 0.85846 0.75275 1.90695 1.16133 1.87491 1.50807 1.23344 1.02508 0.94783 1.06348 1.85707 1.13047 0.97667 1.97038 1.23176 0.94542 0.92452 1.58901 0.89754 1.26196 0.97667 1.01830 0.93692 1.70204 1.14269 1.22484 1.48015 0.84911 0.77835 0.76120 0.78835 1.19284 1.20286 1.17903 1.20606 0.96194 0.82576 0.96927 0.93044 1.20784 1.01222 0.98089 0.95800 1.21303 0.98683 0.97251 1.00180 1.21987 0.99906 0.95131 0.84677 1.47752 1.05112 1.57656 1.22491 1.20519 0.83046 0.78079 0.86818 1.90677 1.69981 1.48264 1.38848 1.22343 0.95249 1.05835 0.98874 1.23032 0.99164 0.89756 1.04196 1.23007 0.91666 1.01640 1.04222 1.21740 0.93648 0.97203 0.88186 1.22092 0.98477 0.98778 0.97267 0.91109 0.90863 0.87538 0.87248 0.87529 0.91999 0.87998 0.92780 0.86880 0.94264 0.87126 0.87604 0.83304 0.89211 0.84214 0.85869 0.90553 0.88985 0.93547 0.90864 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.59 127.77 1.23 2.38 16 2 N -0.61 -16.52 2.60 -827.28 -2.15 -18.67 16 3 C 0.53 21.20 7.69 87.66 0.67 21.87 16 4 O -0.57 -29.45 15.19 -3.03 -0.05 -29.49 16 5 C -0.12 -4.96 4.71 71.24 0.34 -4.63 16 6 S -0.16 -9.40 20.57 -56.49 -1.16 -10.57 16 7 C -0.54 -31.69 9.50 67.95 0.65 -31.04 16 8 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 9 C 0.01 0.62 5.49 84.86 0.47 1.08 16 10 N -0.91 -57.60 13.22 21.65 0.29 -57.31 16 11 Si 1.00 44.23 29.55 68.60 2.03 46.25 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 15 C 0.14 3.33 2.14 44.16 0.09 3.43 16 16 H 0.05 1.81 6.24 -2.39 -0.01 1.80 16 17 C -0.12 -1.80 3.95 28.61 0.11 -1.68 16 18 C -0.14 -1.60 5.44 29.39 0.16 -1.44 16 19 C 0.11 0.99 5.04 87.38 0.44 1.43 16 20 N -0.60 -11.55 2.24 -818.23 -1.83 -13.38 16 21 C 0.53 13.68 7.41 87.66 0.65 14.33 16 22 O -0.60 -22.19 15.53 -3.03 -0.05 -22.23 16 23 C -0.20 -3.57 4.70 -11.54 -0.05 -3.63 16 24 C -0.12 -1.56 10.23 30.59 0.31 -1.25 16 25 C -0.17 -3.10 10.04 30.60 0.31 -2.79 16 26 C 0.11 2.38 6.10 86.48 0.53 2.91 16 27 C -0.13 -2.22 4.86 30.22 0.15 -2.07 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.29 6.45 -2.39 -0.02 1.28 16 30 H 0.11 1.01 7.00 -2.38 -0.02 0.99 16 31 H 0.11 4.08 7.41 -2.39 -0.02 4.06 16 32 H 0.11 4.04 8.10 -2.40 -0.02 4.02 16 33 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 34 H 0.10 0.76 6.95 -2.39 -0.02 0.74 16 35 H 0.05 0.99 8.04 -2.39 -0.02 0.97 16 36 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.04 0.72 7.65 -2.39 -0.02 0.70 16 38 H 0.11 0.45 8.07 -2.39 -0.02 0.43 16 39 H 0.11 0.58 6.50 -2.39 -0.02 0.57 16 40 H 0.15 1.85 6.45 -2.39 -0.02 1.84 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 1.90 7.67 -2.39 -0.02 1.88 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.40 6.96 -2.39 -0.02 1.39 16 47 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 48 H 0.11 1.01 7.32 -2.39 -0.02 0.99 16 Total: -1.00 -92.78 390.88 4.07 -88.70 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.95 Total: 17.80 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 6.04 Total: -1.10 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -3.69 Total: -89.36 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.09 Total: -51.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.16 Total: -10.57 kcal Total: -92.78 4.07 -88.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078836154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.935 kcal (2) G-P(sol) polarization free energy of solvation -92.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds