Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99903 * 2 1 4 4 O 1.21283 * 120.00136 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99877 * 0.02562 * 3 2 1 6 6 S 1.81001 * 109.47038 * 180.02562 * 5 3 2 7 7 C 1.76201 * 99.99892 * 179.97438 * 6 5 3 8 8 H 1.08005 * 120.00078 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99939 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99763 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99776 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47114 * 90.00060 * 11 9 7 13 13 H 1.48502 * 109.46540 * 209.99942 * 11 9 7 14 14 H 1.48495 * 109.47094 * 329.99839 * 11 9 7 15 15 C 1.46500 * 120.00325 * 180.02562 * 2 1 3 16 16 H 1.08995 * 109.51153 * 179.97438 * 15 2 1 17 17 C 1.52573 * 109.48921 * 299.99992 * 15 2 1 18 18 C 1.47094 * 114.32381 * 204.98199 * 17 15 2 19 19 C 1.54867 * 110.18154 * 297.28310 * 18 17 15 20 20 N 1.44277 * 109.76722 * 71.39353 * 19 18 17 21 21 C 1.34769 * 118.75803 * 89.09693 * 20 19 18 22 22 O 1.21283 * 120.00451 * 180.02562 * 21 20 19 23 23 C 1.50713 * 119.99991 * 0.05192 * 21 20 19 24 24 C 1.52995 * 117.49683 * 248.62248 * 23 21 20 25 25 C 1.52993 * 117.49654 * 180.02562 * 23 21 20 26 26 C 1.47605 * 122.59681 * 269.14880 * 20 19 18 27 27 C 1.50880 * 109.49310 * 59.88023 * 15 2 1 28 28 H 1.09005 * 109.47172 * 269.99657 * 1 2 3 29 29 H 1.08999 * 109.47675 * 30.00034 * 1 2 3 30 30 H 1.09002 * 109.46702 * 150.00620 * 1 2 3 31 31 H 1.09000 * 109.46991 * 300.00010 * 5 3 2 32 32 H 1.09000 * 109.47090 * 60.00035 * 5 3 2 33 33 H 0.97004 * 119.99547 * 179.97438 * 10 9 7 34 34 H 1.08998 * 108.51023 * 83.72647 * 17 15 2 35 35 H 1.08996 * 108.38611 * 326.14626 * 17 15 2 36 36 H 1.09002 * 109.33138 * 57.46086 * 18 17 15 37 37 H 1.08996 * 109.32977 * 177.11285 * 18 17 15 38 38 H 1.08999 * 109.45170 * 191.21689 * 19 18 17 39 39 H 1.09000 * 109.44736 * 311.13942 * 19 18 17 40 40 H 1.08999 * 115.54535 * 34.32515 * 23 21 20 41 41 H 1.09009 * 117.50071 * 359.97438 * 24 23 21 42 42 H 1.09003 * 117.50039 * 145.02006 * 24 23 21 43 43 H 1.09005 * 117.49364 * 214.97549 * 25 23 21 44 44 H 1.08998 * 117.50228 * 359.97438 * 25 23 21 45 45 H 1.08999 * 108.94670 * 281.39520 * 26 20 19 46 46 H 1.09003 * 108.94250 * 162.76216 * 26 20 19 47 47 H 1.09003 * 109.36863 * 268.34337 * 27 15 2 48 48 H 1.09005 * 109.36373 * 28.07985 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 -0.0003 7 6 1.4413 5.2082 -0.0002 8 1 0.3760 5.0305 0.0007 9 6 1.9280 6.5081 -0.0003 10 7 3.2263 6.7247 0.0001 11 14 0.7404 7.9500 0.0005 12 1 0.4264 8.3319 1.4007 13 1 1.3614 9.1030 -0.6997 14 1 -0.5105 7.5614 -0.6989 15 6 2.1975 -1.2687 -0.0006 16 1 3.2693 -1.0702 -0.0009 17 6 1.8293 -2.0697 1.2447 18 6 2.8559 -3.0331 1.6709 19 6 3.0732 -4.1031 0.5726 20 7 3.7532 -3.5137 -0.5551 21 6 5.1007 -3.5142 -0.5724 22 8 5.6955 -3.0244 -1.5091 23 6 5.8688 -4.1241 0.5719 24 6 6.6624 -3.1772 1.4743 25 6 7.3964 -4.0930 0.4935 26 6 3.0312 -2.9084 -1.6914 27 6 1.8312 -2.0610 -1.2312 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 0.7583 2.5302 -0.8891 32 1 0.7590 2.5298 0.8908 33 1 3.5664 7.6331 -0.0003 34 1 0.9057 -2.6133 1.0459 35 1 1.6494 -1.3713 2.0620 36 1 3.7927 -2.5059 1.8515 37 1 2.5333 -3.5207 2.5908 38 1 3.6802 -4.9155 0.9723 39 1 2.1081 -4.4954 0.2521 40 1 5.4060 -4.9941 1.0379 41 1 6.6294 -2.1131 1.2400 42 1 6.7219 -3.4240 2.5343 43 1 7.9390 -4.9427 0.9081 44 1 7.8460 -3.6319 -0.3858 45 1 2.6732 -3.7025 -2.3467 46 1 3.7191 -2.2738 -2.2501 47 1 0.9918 -2.7175 -1.0019 48 1 1.5468 -1.3765 -2.0304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078836155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -62.247525 kcal Electronic energy + Delta-G solvation = -28174.032109 eV Core-core repulsion = 24355.290372 eV Total energy + Delta-G solvation = -3818.741737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82226 -40.87448 -38.88444 -37.14185 -36.63024 -34.60989 -34.18922 -33.47751 -30.71376 -28.22155 -27.72916 -27.34681 -26.58181 -25.05981 -23.39805 -22.31123 -21.79804 -20.45342 -19.68593 -19.50899 -18.69428 -18.09201 -17.62386 -17.15228 -16.90253 -16.74585 -16.41262 -16.03584 -15.73316 -15.37629 -15.29809 -14.89422 -14.59264 -14.47902 -14.24139 -14.03870 -13.91730 -13.58922 -13.34151 -13.31343 -13.20837 -13.13571 -12.90503 -12.70581 -12.63162 -12.49398 -12.29062 -12.04896 -11.80184 -11.69202 -11.59027 -11.45030 -11.41600 -11.16304 -10.87541 -10.83546 -10.29257 -9.75633 -9.61048 -8.71405 -8.36499 -6.16054 1.23193 1.41248 1.41879 1.43995 1.54510 1.55037 1.94939 2.08098 2.25453 2.90315 2.97524 3.24219 3.43377 3.60509 3.77843 3.78801 3.88555 3.92829 3.94680 4.01342 4.08266 4.13941 4.19899 4.28729 4.35682 4.43553 4.49578 4.58928 4.68302 4.69436 4.70702 4.79194 4.83841 4.90768 4.91665 4.95183 5.03049 5.09870 5.12980 5.18912 5.28240 5.38633 5.39072 5.61690 5.63231 6.17446 6.26976 6.36234 7.04113 7.13648 7.14058 8.72957 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002599 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.763477 B =10771.332402 C =11635.427346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.526 3.474 4 O -0.572 6.572 5 C -0.119 4.119 6 S -0.161 6.161 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.011 3.989 10 N -0.913 5.913 11 Si 1.002 2.998 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.256 1.256 15 C 0.141 3.859 16 H 0.051 0.949 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.104 3.896 20 N -0.598 5.598 21 C 0.524 3.476 22 O -0.596 6.596 23 C -0.189 4.189 24 C -0.151 4.151 25 C -0.153 4.153 26 C 0.114 3.886 27 C -0.129 4.129 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.166 0.834 41 H 0.063 0.937 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.115 0.885 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -30.158 4.735 31.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C 0.314 3.686 4 O -0.451 6.451 5 C -0.270 4.270 6 S 0.066 5.934 7 C -0.691 4.691 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.823 3.177 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.180 1.180 15 C 0.037 3.963 16 H 0.069 0.931 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.329 5.329 21 C 0.314 3.686 22 O -0.478 6.478 23 C -0.209 4.209 24 C -0.188 4.188 25 C -0.190 4.190 26 C -0.009 4.009 27 C -0.167 4.167 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.183 0.817 41 H 0.082 0.918 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.133 0.867 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.103 -29.811 4.236 30.723 hybrid contribution -1.300 1.726 -0.321 2.185 sum -7.403 -28.085 3.915 29.307 Atomic orbital electron populations 1.22088 0.76792 1.04847 1.03472 1.48012 1.08505 1.04265 1.73153 1.20263 0.87273 0.85833 0.75272 1.90692 1.16116 1.87492 1.50817 1.23349 1.02528 0.94816 1.06336 1.85697 1.13007 0.97626 1.97039 1.23177 0.94542 0.92475 1.58937 0.89782 1.26188 0.97658 1.01805 0.93681 1.70203 1.14255 1.22477 1.47990 0.84912 0.77812 0.76117 0.78874 1.19146 1.20352 1.18006 1.20602 0.96163 0.82556 0.96932 0.93067 1.20782 1.01195 0.98082 0.95739 1.21266 0.98676 0.97215 1.00059 1.21962 0.99873 0.95273 0.84718 1.47685 1.05124 1.57920 1.22155 1.20537 0.83059 0.78067 0.86963 1.90680 1.69969 1.48498 1.38609 1.22369 0.94977 1.04333 0.99222 1.22938 1.01849 0.95711 0.98339 1.23007 0.91739 1.03049 1.01201 1.21756 0.93632 0.97318 0.88152 1.22118 0.98546 0.98783 0.97285 0.90946 0.90951 0.87672 0.87428 0.87378 0.92004 0.88165 0.93042 0.94132 0.87061 0.87551 0.87148 0.81652 0.91786 0.84559 0.84621 0.90612 0.88888 0.93558 0.86692 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.61 127.77 1.23 2.39 16 2 N -0.61 -16.50 2.59 -827.27 -2.15 -18.65 16 3 C 0.53 21.16 7.69 87.66 0.67 21.84 16 4 O -0.57 -29.34 15.19 -3.04 -0.05 -29.38 16 5 C -0.12 -4.98 4.71 71.24 0.34 -4.64 16 6 S -0.16 -9.33 20.57 -56.49 -1.16 -10.49 16 7 C -0.54 -31.69 9.50 67.95 0.65 -31.05 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 C 0.01 0.65 5.49 84.86 0.47 1.12 16 10 N -0.91 -57.46 13.22 21.65 0.29 -57.18 16 11 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 15 C 0.14 3.34 2.14 44.16 0.09 3.43 16 16 H 0.05 1.80 6.24 -2.39 -0.01 1.78 16 17 C -0.12 -1.82 4.30 28.62 0.12 -1.69 16 18 C -0.13 -1.60 5.75 29.40 0.17 -1.43 16 19 C 0.10 0.95 5.18 87.43 0.45 1.40 16 20 N -0.60 -11.37 2.24 -818.89 -1.83 -13.20 16 21 C 0.52 13.50 7.41 87.66 0.65 14.15 16 22 O -0.60 -22.10 15.53 -3.04 -0.05 -22.15 16 23 C -0.19 -3.23 5.23 -11.54 -0.06 -3.30 16 24 C -0.15 -2.78 10.23 30.57 0.31 -2.46 16 25 C -0.15 -2.74 10.04 30.57 0.31 -2.43 16 26 C 0.11 2.33 6.10 86.49 0.53 2.86 16 27 C -0.13 -2.20 4.35 30.22 0.13 -2.07 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.29 6.44 -2.39 -0.02 1.28 16 30 H 0.10 1.02 7.21 -2.39 -0.02 1.00 16 31 H 0.11 4.05 7.40 -2.40 -0.02 4.04 16 32 H 0.11 4.05 8.11 -2.39 -0.02 4.03 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.10 0.79 7.36 -2.39 -0.02 0.78 16 35 H 0.05 0.97 8.03 -2.39 -0.02 0.95 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.48 5.82 -2.39 -0.01 0.47 16 39 H 0.11 0.42 8.06 -2.39 -0.02 0.40 16 40 H 0.17 1.38 6.34 -2.39 -0.02 1.36 16 41 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.14 1.47 8.14 -2.38 -0.02 1.46 16 44 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.05 1.39 6.95 -2.39 -0.02 1.37 16 47 H 0.11 0.97 7.24 -2.39 -0.02 0.95 16 48 H 0.07 1.47 7.99 -2.38 -0.02 1.45 16 Total: -1.00 -92.76 391.93 4.09 -88.67 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.95 Total: 18.06 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.06 Total: -1.89 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.69 Total: -89.02 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.09 Total: -51.53 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -1.16 Total: -10.49 kcal Total: -92.76 4.09 -88.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078836155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.420 kcal (2) G-P(sol) polarization free energy of solvation -92.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds