Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48508 * 109.47089 * 240.00064 * 3 2 1 5 5 H 1.48496 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47214 * 120.00222 * 3 2 1 7 7 C 1.38811 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21486 * 120.00452 * 0.02562 * 19 18 16 21 21 C 1.48361 * 119.99704 * 179.97438 * 19 18 16 22 22 C 1.40167 * 119.20347 * 179.97438 * 21 19 18 23 23 C 1.36628 * 119.70686 * 179.97438 * 22 21 19 24 24 C 1.40589 * 118.20730 * 0.02562 * 23 22 21 25 25 C 1.40739 * 121.37642 * 179.97438 * 24 23 22 26 26 C 1.36590 * 118.12994 * 180.02562 * 25 24 23 27 27 C 1.39429 * 119.84725 * 359.97438 * 26 25 24 28 28 N 1.31012 * 121.84365 * 0.02562 * 27 26 25 29 29 C 1.33860 * 121.42192 * 359.95873 * 28 27 26 30 30 N 1.31880 * 119.20480 * 359.73453 * 21 19 18 31 31 H 0.96998 * 119.99581 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 34 34 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 35 35 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 37 37 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 38 38 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 40 40 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 42 42 H 1.07999 * 120.14751 * 359.96417 * 22 21 19 43 43 H 1.07997 * 120.89349 * 180.02562 * 23 22 21 44 44 H 1.07993 * 120.93802 * 0.02562 * 25 24 23 45 45 H 1.08001 * 120.07501 * 179.97438 * 26 25 24 46 46 H 1.08008 * 119.07514 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5890 12 6 2.4220 -4.0356 -1.4375 13 6 3.1865 -5.3609 -1.4375 14 6 2.3088 -6.4560 -0.8280 15 6 1.9449 -6.0771 0.6089 16 6 1.1804 -4.7519 0.6089 17 1 0.2697 -4.8577 0.0194 18 7 0.8314 -4.3894 1.9849 19 6 -0.2870 -4.8860 2.5495 20 8 -1.0056 -5.6346 1.9177 21 6 -0.6401 -4.5194 3.9430 22 6 -1.8074 -5.0451 4.5137 23 6 -2.1422 -4.7148 5.7965 24 6 -1.2905 -3.8478 6.5032 25 6 -1.5713 -3.4632 7.8275 26 6 -0.6988 -2.6175 8.4513 27 6 0.4314 -2.1626 7.7732 28 7 0.6895 -2.5229 6.5403 29 6 -0.1229 -3.3492 5.8702 30 7 0.1545 -3.7106 4.6166 31 1 -0.4849 0.8401 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.5113 -4.1418 -2.0270 34 1 3.0469 -3.2552 -1.8718 35 1 3.4453 -5.6310 -2.4613 36 1 4.0972 -5.2550 -0.8480 37 1 1.3981 -6.5619 -1.4176 38 1 2.8533 -7.4002 -0.8285 39 1 2.8556 -5.9713 1.1985 40 1 1.3200 -6.8575 1.0432 41 1 1.4055 -3.7920 2.4894 42 1 -2.4396 -5.7082 3.9418 43 1 -3.0369 -5.1090 6.2551 44 1 -2.4518 -3.8265 8.3363 45 1 -0.8839 -2.3018 9.4675 46 1 1.1128 -1.4939 8.2783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085205252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = 38.592071 kcal Electronic energy + Delta-G solvation = -29244.711371 eV Core-core repulsion = 25327.191166 eV Total energy + Delta-G solvation = -3917.520205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37901 -39.76084 -38.21896 -37.23661 -34.40358 -33.97122 -33.66159 -31.38006 -31.09130 -31.05341 -29.22925 -27.68713 -25.71115 -24.40667 -23.65337 -22.80540 -22.29609 -21.04336 -20.43959 -19.71763 -18.86107 -17.98338 -17.38024 -17.04572 -16.20088 -15.88637 -15.37138 -15.13325 -14.85945 -14.46414 -14.39385 -14.24298 -13.95921 -13.72042 -13.54685 -13.37632 -13.30502 -12.89763 -12.60266 -12.37084 -12.11216 -12.02623 -11.99355 -11.28783 -11.03693 -10.86348 -10.84890 -10.74505 -10.68618 -10.52890 -10.29706 -10.13527 -9.90926 -9.65207 -9.58184 -9.14382 -9.13220 -9.07666 -8.84639 -8.55480 -6.91724 -5.70738 -3.00002 -0.08457 0.33655 1.69793 2.29852 3.21037 3.30382 3.48122 3.52427 3.53105 3.61281 4.05037 4.18245 4.39678 4.44434 4.54626 4.62285 4.70563 4.86849 5.09235 5.10615 5.13053 5.18664 5.33246 5.45178 5.55459 5.58758 5.63563 5.65256 5.76192 5.84937 5.90413 5.94478 5.98414 6.00256 6.02059 6.16010 6.36208 6.38265 6.50397 6.50790 6.55033 6.62579 6.87390 6.93126 7.10272 7.18625 7.74388 7.84511 8.03265 8.46018 8.48752 9.58171 10.14031 10.49116 11.51429 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.004006 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.438164 B = 6988.055514 C = 9355.733128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.052 0.948 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.138 3.862 17 H 0.087 0.913 18 N -0.679 5.679 19 C 0.567 3.433 20 O -0.539 6.539 21 C 0.153 3.847 22 C -0.128 4.128 23 C -0.051 4.051 24 C -0.145 4.145 25 C -0.048 4.048 26 C -0.176 4.176 27 C 0.156 3.844 28 N -0.453 5.453 29 C 0.304 3.696 30 N -0.427 5.427 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.416 0.584 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -12.504 15.249 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.070 0.930 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.033 3.967 17 H 0.105 0.895 18 N -0.327 5.327 19 C 0.350 3.650 20 O -0.416 6.416 21 C -0.005 4.005 22 C -0.149 4.149 23 C -0.078 4.078 24 C -0.150 4.150 25 C -0.074 4.074 26 C -0.195 4.195 27 C -0.022 4.022 28 N -0.162 5.162 29 C 0.065 3.935 30 N -0.139 5.139 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.253 0.747 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.889 -12.221 13.901 18.531 hybrid contribution -1.124 0.841 1.100 1.783 sum -2.013 -11.380 15.000 18.936 Atomic orbital electron populations 1.69663 1.05103 1.25623 1.57466 1.24713 0.95421 0.97579 1.02906 0.86309 0.78544 0.83769 0.77805 1.21338 1.21846 1.21242 1.19148 0.90877 0.83989 1.42937 0.91229 1.42389 1.05766 0.99473 1.88493 1.20465 0.93988 0.85701 0.93611 0.93014 1.22219 0.99967 0.95531 0.99616 1.21589 0.98574 0.95684 0.99963 1.21465 0.99933 0.98034 0.95658 1.21877 1.00129 0.97022 0.97317 1.21431 0.99292 0.94339 0.81675 0.89512 1.45831 1.24155 1.47558 1.15191 1.17785 0.81759 0.80949 0.84490 1.90751 1.51258 1.36989 1.62575 1.21588 0.91550 0.92464 0.94850 1.21860 0.97062 1.00337 0.95621 1.21422 0.98233 0.94360 0.93778 1.19735 0.97897 1.00743 0.96624 1.21469 0.98797 0.94767 0.92404 1.22047 0.96150 0.99287 1.02064 1.23156 0.94733 0.95045 0.89234 1.67667 1.29681 1.10532 1.08276 1.19229 0.89568 0.94123 0.90559 1.67435 1.30402 1.09904 1.06130 0.93585 0.78181 0.92426 0.91523 0.92666 0.92340 0.91918 0.92354 0.91872 0.91868 0.74654 0.82605 0.83388 0.83932 0.83891 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -18.01 4.95 -53.42 -0.26 -18.27 16 10 C 0.17 3.42 2.29 -67.93 -0.16 3.26 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.84 5.49 -26.74 -0.15 -1.98 16 16 C 0.14 2.46 1.97 -67.93 -0.13 2.32 16 17 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 18 N -0.68 -12.49 4.90 -54.59 -0.27 -12.75 16 19 C 0.57 10.36 7.78 -12.10 -0.09 10.26 16 20 O -0.54 -10.51 15.94 5.38 0.09 -10.42 16 21 C 0.15 2.54 6.75 -82.96 -0.56 1.98 16 22 C -0.13 -1.67 9.54 -39.44 -0.38 -2.05 16 23 C -0.05 -0.54 9.89 -39.28 -0.39 -0.92 16 24 C -0.14 -1.75 5.75 -106.68 -0.61 -2.36 16 25 C -0.05 -0.40 9.90 -39.23 -0.39 -0.79 16 26 C -0.18 -1.35 10.04 -39.73 -0.40 -1.75 16 27 C 0.16 1.61 11.14 -17.46 -0.19 1.41 16 28 N -0.45 -6.97 10.43 -12.59 -0.13 -7.11 16 29 C 0.30 4.85 7.62 -157.91 -1.20 3.65 16 30 N -0.43 -7.59 9.56 -9.19 -0.09 -7.68 16 31 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.38 10.55 7.80 -40.82 -0.32 10.23 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.42 8.01 7.91 -40.82 -0.32 7.69 16 42 H 0.16 1.80 7.60 -52.49 -0.40 1.40 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -34.70 383.11 -11.03 -45.72 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.47 Total: 14.95 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -5.36 Total: -0.10 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -0.03 Total: -73.75 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.70 -11.03 -45.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085205252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.314 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds