Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00568 * 2 1 4 4 H 1.48493 * 109.47281 * 275.24284 * 3 2 1 5 5 H 1.48502 * 109.46660 * 35.24117 * 3 2 1 6 6 H 1.48502 * 109.47181 * 155.23640 * 3 2 1 7 7 C 1.38816 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 332.66047 * 7 2 1 9 9 N 1.36937 * 120.00233 * 152.66203 * 7 2 1 10 10 C 1.44345 * 116.42477 * 329.06057 * 9 7 2 11 11 C 1.51569 * 113.01614 * 188.02950 * 10 9 7 12 12 C 1.52912 * 111.66156 * 320.12009 * 11 10 9 13 13 H 1.09007 * 112.47147 * 293.93230 * 12 11 10 14 14 C 1.55408 * 106.57214 * 169.88935 * 12 11 10 15 15 N 1.47382 * 106.73856 * 270.99217 * 14 12 11 16 16 C 1.34773 * 125.74252 * 179.02611 * 15 14 12 17 17 O 1.21797 * 120.00053 * 5.45855 * 16 15 14 18 18 C 1.41707 * 120.00076 * 185.45621 * 16 15 14 19 19 C 1.39181 * 125.87300 * 6.10590 * 18 16 15 20 20 C 1.38084 * 107.67845 * 179.97438 * 19 18 16 21 21 C 1.39511 * 107.56603 * 0.02562 * 20 19 18 22 22 C 1.40624 * 132.41363 * 179.97438 * 21 20 19 23 23 C 1.36287 * 119.16100 * 180.02562 * 22 21 20 24 24 C 1.39968 * 120.03849 * 359.97080 * 23 22 21 25 25 N 1.30650 * 120.99379 * 0.29552 * 24 23 22 26 26 N 1.37149 * 108.20328 * 359.97438 * 21 20 19 27 27 C 1.47931 * 108.51761 * 359.28902 * 15 14 12 28 28 C 1.54101 * 109.62722 * 60.85771 * 12 11 10 29 29 H 1.09000 * 109.18700 * 187.52727 * 28 12 11 30 30 C 1.43978 * 116.42514 * 149.07046 * 9 7 2 31 31 H 0.97000 * 119.99252 * 0.02562 * 1 2 3 32 32 H 1.08993 * 108.77636 * 67.11124 * 10 9 7 33 33 H 1.09005 * 108.67590 * 308.87304 * 10 9 7 34 34 H 1.09000 * 109.04421 * 199.55802 * 11 10 9 35 35 H 1.08999 * 108.98557 * 80.63585 * 11 10 9 36 36 H 1.08995 * 110.00694 * 151.67055 * 14 12 11 37 37 H 1.09005 * 110.00674 * 30.30772 * 14 12 11 38 38 H 1.07996 * 126.16294 * 359.95843 * 19 18 16 39 39 H 1.07996 * 126.21927 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.41648 * 0.04887 * 22 21 20 41 41 H 1.07997 * 119.97955 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.50677 * 180.02562 * 24 23 22 43 43 H 1.09007 * 110.56480 * 93.91332 * 27 15 14 44 44 H 1.08998 * 110.56912 * 216.77201 * 27 15 14 45 45 H 1.08992 * 108.12084 * 304.65245 * 30 9 7 46 46 H 1.09012 * 108.11153 * 61.31741 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3871 2.1103 -1.3941 5 1 1.5075 2.6181 0.8079 6 1 3.5988 1.4105 0.5865 7 6 2.0102 -1.2022 0.0005 8 1 1.5606 -2.0851 0.4305 9 7 3.2649 -1.2688 -0.5440 10 6 3.5356 -0.3752 -1.6449 11 6 4.8697 -0.6441 -2.3121 12 6 5.9558 -0.9771 -1.2886 13 1 6.1926 -0.1318 -0.6424 14 6 7.1853 -1.4805 -2.0948 15 7 7.0232 -2.9371 -2.2508 16 6 7.8671 -3.7572 -2.9077 17 8 8.9155 -3.3240 -3.3512 18 6 7.5347 -5.1236 -3.0825 19 6 6.3260 -5.7198 -2.7351 20 6 6.4070 -7.0573 -3.0686 21 6 7.6692 -7.2779 -3.6206 22 6 8.2940 -8.4308 -4.1284 23 6 9.5646 -8.3389 -4.6128 24 6 10.2313 -7.1083 -4.6017 25 7 9.6563 -6.0358 -4.1261 26 7 8.3495 -6.0871 -3.6237 27 6 5.7750 -3.3464 -1.5705 28 6 5.5606 -2.2463 -0.5089 29 1 6.2686 -2.4015 0.3052 30 6 4.1689 -2.2225 0.0442 31 1 -0.4849 0.8401 -0.0004 32 1 3.5288 0.6498 -1.2745 33 1 2.7441 -0.4850 -2.3863 34 1 5.1703 0.2396 -2.8750 35 1 4.7597 -1.4829 -2.9994 36 1 8.1034 -1.2638 -1.5488 37 1 7.2111 -1.0013 -3.0735 38 1 5.4776 -5.2255 -2.2855 39 1 5.6339 -7.7981 -2.9278 40 1 7.7734 -9.3771 -4.1348 41 1 10.0569 -9.2159 -5.0064 42 1 11.2378 -7.0451 -4.9881 43 1 4.9441 -3.3683 -2.2756 44 1 5.8998 -4.3187 -1.0939 45 1 4.2325 -2.0152 1.1124 46 1 3.7405 -3.2171 -0.0806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088132444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = 132.562163 kcal Electronic energy + Delta-G solvation = -29743.815339 eV Core-core repulsion = 25830.369984 eV Total energy + Delta-G solvation = -3913.445356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27269 -40.38978 -38.49424 -37.38070 -35.85906 -33.56823 -32.86304 -31.78607 -31.13414 -30.55165 -29.28871 -27.90936 -26.03010 -24.99760 -23.81546 -22.90821 -22.50259 -21.62583 -21.33182 -20.12156 -18.20597 -17.80871 -17.45663 -17.18563 -16.51595 -16.20757 -15.84640 -15.62556 -15.34835 -15.27396 -14.45921 -14.18006 -14.07577 -13.93911 -13.71140 -13.48099 -13.08671 -13.04420 -12.76047 -12.70335 -12.55423 -12.27704 -12.07978 -12.03863 -11.50016 -11.40321 -11.09592 -10.95817 -10.80081 -10.65832 -10.37037 -10.21348 -9.94379 -9.87607 -9.86700 -9.37653 -9.17027 -8.63397 -8.41089 -8.01277 -6.79490 -6.02505 -3.36694 0.15719 0.69680 1.60975 2.05697 2.92880 3.00356 3.35491 3.38019 3.49565 3.54319 3.95912 4.14915 4.26978 4.49191 4.53213 4.54370 4.60675 4.84364 4.91083 4.94837 5.00266 5.07113 5.26330 5.31588 5.36404 5.39925 5.42290 5.53752 5.61631 5.66619 5.71749 5.77668 5.84619 5.89157 5.96303 6.05943 6.15982 6.24739 6.25288 6.37529 6.41090 6.45991 6.58787 6.69406 6.80882 6.88852 7.34297 7.50053 8.07661 8.19528 8.36973 9.09617 9.77057 10.00962 11.13268 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.002730 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.140990 B =10255.184190 C =11039.571421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.036 3.964 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.275 1.275 7 C -0.281 4.281 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.156 3.844 11 C -0.124 4.124 12 C -0.087 4.087 13 H 0.099 0.901 14 C 0.116 3.884 15 N -0.608 5.608 16 C 0.596 3.404 17 O -0.538 6.538 18 C -0.017 4.017 19 C -0.123 4.123 20 C -0.166 4.166 21 C -0.001 4.001 22 C -0.015 4.015 23 C -0.199 4.199 24 C 0.121 3.879 25 N -0.243 5.243 26 N -0.219 5.219 27 C 0.093 3.907 28 C -0.101 4.101 29 H 0.079 0.921 30 C 0.175 3.825 31 H 0.263 0.737 32 H 0.009 0.991 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.195 0.805 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.032 0.968 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.675 -16.898 -7.940 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.165 4.165 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.234 1.234 6 H -0.201 1.201 7 C -0.410 4.410 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.162 4.162 12 C -0.106 4.106 13 H 0.117 0.883 14 C -0.006 4.006 15 N -0.343 5.343 16 C 0.387 3.613 17 O -0.416 6.416 18 C -0.134 4.134 19 C -0.147 4.147 20 C -0.192 4.192 21 C -0.113 4.113 22 C -0.042 4.042 23 C -0.222 4.222 24 C -0.072 4.072 25 N -0.051 5.051 26 N 0.019 4.981 27 C -0.029 4.029 28 C -0.121 4.121 29 H 0.098 0.902 30 C 0.049 3.951 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.196 0.804 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.167 0.833 42 H 0.211 0.789 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 18.703 -15.523 -8.186 25.647 hybrid contribution 0.243 0.135 -0.130 0.306 sum 18.946 -15.389 -8.315 25.786 Atomic orbital electron populations 1.69940 1.06073 1.26796 1.50685 1.25305 0.95002 0.97713 0.98431 0.86872 0.80097 0.84610 0.76916 1.21566 1.23397 1.20116 1.18812 0.89651 0.95375 1.37129 0.90081 1.42884 1.11872 1.43645 1.34167 1.20187 0.94109 0.92725 0.89888 1.21625 0.95436 1.01544 0.97611 1.22125 0.93687 0.97969 0.96791 0.88270 1.22354 0.98611 0.79214 1.00445 1.48299 1.23919 1.08436 1.53630 1.15244 0.83332 0.83836 0.78927 1.90885 1.23433 1.77074 1.50193 1.18877 0.91431 0.90533 1.12574 1.22252 0.96602 0.94454 1.01378 1.21125 0.95159 0.97287 1.05650 1.19494 0.95458 0.87130 1.09193 1.20926 0.94113 0.96998 0.92152 1.21452 0.96175 0.99218 1.05399 1.24151 1.00659 0.89112 0.93239 1.76184 0.90944 1.25545 1.12433 1.45424 1.07812 1.07546 1.37311 1.23061 0.86094 0.98868 0.94842 1.21727 0.99305 0.94031 0.97027 0.90218 1.19323 0.86613 0.93611 0.95532 0.92716 0.97377 0.93649 0.91775 0.91760 0.91519 0.91164 0.80387 0.82432 0.82646 0.83277 0.78876 0.89938 0.89336 0.94974 0.95598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.97 55.49 0.78 -26.03 16 2 C 0.04 1.03 5.21 -17.43 -0.09 0.94 16 3 Si 0.88 22.22 24.66 -169.99 -4.19 18.03 16 4 H -0.29 -7.06 6.92 56.52 0.39 -6.67 16 5 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.28 -6.81 7.10 56.52 0.40 -6.41 16 7 C -0.28 -7.61 9.64 -15.06 -0.15 -7.76 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 9 N -0.60 -13.56 2.94 -179.70 -0.53 -14.09 16 10 C 0.16 3.30 4.83 -5.91 -0.03 3.27 16 11 C -0.12 -2.04 4.78 -27.50 -0.13 -2.17 16 12 C -0.09 -1.29 3.65 -88.81 -0.32 -1.61 16 13 H 0.10 1.48 8.14 -51.92 -0.42 1.05 16 14 C 0.12 1.64 6.25 -2.28 -0.01 1.63 16 15 N -0.61 -8.91 3.34 -172.83 -0.58 -9.49 16 16 C 0.60 9.92 7.64 -14.94 -0.11 9.80 16 17 O -0.54 -10.68 16.83 5.10 0.09 -10.59 16 18 C -0.02 -0.24 6.80 -83.74 -0.57 -0.81 16 19 C -0.12 -1.45 9.02 -39.29 -0.35 -1.80 16 20 C -0.17 -1.68 10.92 -39.16 -0.43 -2.11 16 21 C 0.00 -0.01 6.80 -84.11 -0.57 -0.58 16 22 C -0.02 -0.11 10.11 -39.38 -0.40 -0.51 16 23 C -0.20 -1.22 10.04 -39.64 -0.40 -1.61 16 24 C 0.12 1.00 11.29 -17.41 -0.20 0.80 16 25 N -0.24 -3.30 11.33 30.61 0.35 -2.96 16 26 N -0.22 -3.11 4.01 -8.28 -0.03 -3.15 16 27 C 0.09 1.22 3.78 -2.54 -0.01 1.21 16 28 C -0.10 -1.48 2.84 -90.92 -0.26 -1.74 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 C 0.18 3.20 5.75 -6.98 -0.04 3.16 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.01 0.21 2.99 -51.93 -0.16 0.05 16 33 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.02 6.60 -51.93 -0.34 0.68 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 38 H 0.18 1.83 4.51 -52.49 -0.24 1.59 16 39 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.16 0.57 8.06 -52.48 -0.42 0.14 16 41 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 42 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.08 1.11 6.77 -51.93 -0.35 0.76 16 44 H 0.09 1.00 5.77 -51.93 -0.30 0.70 16 45 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 46 H 0.03 0.46 7.80 -51.92 -0.40 0.06 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -36.34 357.21 -8.80 -45.15 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.99 Total: -2.36 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -4.07 Total: 0.10 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.02 Total: -55.71 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.19 Total: 18.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.34 -8.80 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088132444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.709 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds