Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00568 * 2 1 4 4 H 1.48493 * 109.47281 * 275.24284 * 3 2 1 5 5 H 1.48502 * 109.46660 * 35.24117 * 3 2 1 6 6 H 1.48502 * 109.47181 * 155.23640 * 3 2 1 7 7 C 1.38816 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 332.66047 * 7 2 1 9 9 N 1.36937 * 120.00233 * 152.66203 * 7 2 1 10 10 C 1.44345 * 116.42477 * 329.06057 * 9 7 2 11 11 C 1.51569 * 113.01614 * 188.02950 * 10 9 7 12 12 C 1.52912 * 111.66156 * 320.12009 * 11 10 9 13 13 H 1.09007 * 112.47147 * 293.93230 * 12 11 10 14 14 C 1.55408 * 106.57214 * 169.88935 * 12 11 10 15 15 N 1.47382 * 106.73856 * 270.99217 * 14 12 11 16 16 C 1.34773 * 125.74252 * 179.02611 * 15 14 12 17 17 O 1.21797 * 120.00053 * 5.45855 * 16 15 14 18 18 C 1.41707 * 120.00076 * 185.45621 * 16 15 14 19 19 C 1.39181 * 125.87300 * 6.10590 * 18 16 15 20 20 C 1.38084 * 107.67845 * 179.97438 * 19 18 16 21 21 C 1.39511 * 107.56603 * 0.02562 * 20 19 18 22 22 C 1.40624 * 132.41363 * 179.97438 * 21 20 19 23 23 C 1.36287 * 119.16100 * 180.02562 * 22 21 20 24 24 C 1.39968 * 120.03849 * 359.97080 * 23 22 21 25 25 N 1.30650 * 120.99379 * 0.29552 * 24 23 22 26 26 N 1.37149 * 108.20328 * 359.97438 * 21 20 19 27 27 C 1.47931 * 108.51761 * 359.28902 * 15 14 12 28 28 C 1.54101 * 109.62722 * 60.85771 * 12 11 10 29 29 H 1.09000 * 109.18700 * 187.52727 * 28 12 11 30 30 C 1.43978 * 116.42514 * 149.07046 * 9 7 2 31 31 H 0.97000 * 119.99252 * 0.02562 * 1 2 3 32 32 H 1.08993 * 108.77636 * 67.11124 * 10 9 7 33 33 H 1.09005 * 108.67590 * 308.87304 * 10 9 7 34 34 H 1.09000 * 109.04421 * 199.55802 * 11 10 9 35 35 H 1.08999 * 108.98557 * 80.63585 * 11 10 9 36 36 H 1.08995 * 110.00694 * 151.67055 * 14 12 11 37 37 H 1.09005 * 110.00674 * 30.30772 * 14 12 11 38 38 H 1.07996 * 126.16294 * 359.95843 * 19 18 16 39 39 H 1.07996 * 126.21927 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.41648 * 0.04887 * 22 21 20 41 41 H 1.07997 * 119.97955 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.50677 * 180.02562 * 24 23 22 43 43 H 1.09007 * 110.56480 * 93.91332 * 27 15 14 44 44 H 1.08998 * 110.56912 * 216.77201 * 27 15 14 45 45 H 1.08992 * 108.12084 * 304.65245 * 30 9 7 46 46 H 1.09012 * 108.11153 * 61.31741 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3871 2.1103 -1.3941 5 1 1.5075 2.6181 0.8079 6 1 3.5988 1.4105 0.5865 7 6 2.0102 -1.2022 0.0005 8 1 1.5606 -2.0851 0.4305 9 7 3.2649 -1.2688 -0.5440 10 6 3.5356 -0.3752 -1.6449 11 6 4.8697 -0.6441 -2.3121 12 6 5.9558 -0.9771 -1.2886 13 1 6.1926 -0.1318 -0.6424 14 6 7.1853 -1.4805 -2.0948 15 7 7.0232 -2.9371 -2.2508 16 6 7.8671 -3.7572 -2.9077 17 8 8.9155 -3.3240 -3.3512 18 6 7.5347 -5.1236 -3.0825 19 6 6.3260 -5.7198 -2.7351 20 6 6.4070 -7.0573 -3.0686 21 6 7.6692 -7.2779 -3.6206 22 6 8.2940 -8.4308 -4.1284 23 6 9.5646 -8.3389 -4.6128 24 6 10.2313 -7.1083 -4.6017 25 7 9.6563 -6.0358 -4.1261 26 7 8.3495 -6.0871 -3.6237 27 6 5.7750 -3.3464 -1.5705 28 6 5.5606 -2.2463 -0.5089 29 1 6.2686 -2.4015 0.3052 30 6 4.1689 -2.2225 0.0442 31 1 -0.4849 0.8401 -0.0004 32 1 3.5288 0.6498 -1.2745 33 1 2.7441 -0.4850 -2.3863 34 1 5.1703 0.2396 -2.8750 35 1 4.7597 -1.4829 -2.9994 36 1 8.1034 -1.2638 -1.5488 37 1 7.2111 -1.0013 -3.0735 38 1 5.4776 -5.2255 -2.2855 39 1 5.6339 -7.7981 -2.9278 40 1 7.7734 -9.3771 -4.1348 41 1 10.0569 -9.2159 -5.0064 42 1 11.2378 -7.0451 -4.9881 43 1 4.9441 -3.3683 -2.2756 44 1 5.8998 -4.3187 -1.0939 45 1 4.2325 -2.0152 1.1124 46 1 3.7405 -3.2171 -0.0806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088132444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 107.641777 kcal Electronic energy + Delta-G solvation = -29744.895968 eV Core-core repulsion = 25830.369984 eV Total energy + Delta-G solvation = -3914.525985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.08301 -41.56982 -39.74631 -38.17474 -37.42793 -34.45597 -34.23476 -33.35076 -32.64475 -31.54012 -30.24877 -29.06247 -27.44612 -26.01537 -24.97556 -24.31643 -23.72760 -22.90357 -22.20090 -21.09614 -19.66220 -18.94408 -18.75014 -18.13221 -17.55471 -17.35093 -17.23031 -16.62313 -16.51775 -16.29680 -15.88004 -15.72711 -15.39750 -15.05669 -14.76449 -14.53233 -14.46521 -14.31216 -14.00411 -13.80432 -13.68232 -13.56210 -13.22823 -13.06843 -13.00289 -12.80702 -12.53469 -12.44557 -12.05606 -11.74120 -11.63992 -11.48625 -11.43072 -11.38156 -11.21956 -11.04035 -10.52654 -10.00547 -9.79891 -8.80461 -8.71343 -8.20744 -5.50485 -0.45387 -0.09243 0.84638 1.23551 1.33566 1.43050 1.53612 1.93257 2.21551 2.38799 2.43967 3.03909 3.18506 3.31148 3.45977 3.57542 3.61124 3.72638 3.77177 3.85479 3.94731 4.02780 4.24205 4.30188 4.34550 4.39291 4.46034 4.49569 4.57737 4.64801 4.73021 4.77064 4.81644 4.83057 4.95603 4.98248 5.01376 5.06116 5.08284 5.12666 5.21457 5.22656 5.30934 5.41863 5.63713 5.69462 5.97388 6.18958 6.35636 6.62039 7.04606 7.09147 7.79254 7.97844 8.99149 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.002730 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.140990 B =10255.184190 C =11039.571421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.018 4.018 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.313 1.313 6 H -0.266 1.266 7 C -0.270 4.270 8 H 0.053 0.947 9 N -0.606 5.606 10 C 0.154 3.846 11 C -0.116 4.116 12 C -0.082 4.082 13 H 0.105 0.895 14 C 0.121 3.879 15 N -0.607 5.607 16 C 0.593 3.407 17 O -0.585 6.585 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.171 4.171 21 C -0.004 4.004 22 C -0.024 4.024 23 C -0.182 4.182 24 C 0.127 3.873 25 N -0.311 5.311 26 N -0.236 5.236 27 C 0.102 3.898 28 C -0.096 4.096 29 H 0.099 0.901 30 C 0.173 3.827 31 H 0.262 0.738 32 H -0.004 1.004 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.188 0.812 39 H 0.190 0.810 40 H 0.197 0.803 41 H 0.197 0.803 42 H 0.230 0.770 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.027 0.973 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.962 -19.540 -8.843 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.215 4.215 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.243 1.243 6 H -0.191 1.191 7 C -0.400 4.400 8 H 0.071 0.929 9 N -0.332 5.332 10 C 0.029 3.971 11 C -0.153 4.153 12 C -0.101 4.101 13 H 0.123 0.877 14 C -0.001 4.001 15 N -0.340 5.340 16 C 0.386 3.614 17 O -0.467 6.467 18 C -0.188 4.188 19 C -0.142 4.142 20 C -0.196 4.196 21 C -0.117 4.117 22 C -0.050 4.050 23 C -0.204 4.204 24 C -0.063 4.063 25 N -0.120 5.120 26 N 0.002 4.998 27 C -0.020 4.020 28 C -0.115 4.115 29 H 0.117 0.883 30 C 0.048 3.952 31 H 0.071 0.929 32 H 0.013 0.987 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.205 0.795 39 H 0.208 0.792 40 H 0.214 0.786 41 H 0.214 0.786 42 H 0.246 0.754 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.045 0.955 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.009 -18.168 -9.078 29.221 hybrid contribution -0.395 0.672 0.065 0.782 sum 20.615 -17.496 -9.013 28.501 Atomic orbital electron populations 1.70044 1.07585 1.27385 1.53528 1.25860 0.95512 1.00758 0.99349 0.85889 0.78881 0.80686 0.77092 1.20689 1.24270 1.19131 1.18818 0.91297 0.94271 1.35623 0.92943 1.43017 1.11292 1.44289 1.34606 1.20173 0.96172 0.91655 0.89089 1.21548 0.93235 1.02752 0.97806 1.22093 0.93285 0.98226 0.96490 0.87702 1.22281 0.98308 0.79184 1.00322 1.48286 1.23974 1.08438 1.53307 1.15580 0.82753 0.84780 0.78262 1.90833 1.25388 1.78027 1.52477 1.18853 0.93268 0.90253 1.16394 1.22385 0.95749 0.95270 1.00845 1.21534 0.95729 0.97153 1.05175 1.20264 0.95678 0.87506 1.08249 1.21524 0.94778 0.97201 0.91483 1.22020 0.95603 0.99647 1.03180 1.24999 1.01775 0.88987 0.90581 1.76149 0.91675 1.28678 1.15521 1.45583 1.08308 1.08251 1.37632 1.23050 0.85412 0.99266 0.94265 1.21617 0.97182 0.94680 0.98064 0.88263 1.19402 0.88027 0.92584 0.95162 0.92857 0.98683 0.95848 0.89884 0.91209 0.91096 0.91252 0.79528 0.79236 0.78580 0.78573 0.75394 0.90171 0.87276 0.95535 0.94781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.97 21.65 0.30 -57.83 16 2 C -0.02 -1.03 5.21 84.86 0.44 -0.58 16 3 Si 0.94 46.55 24.66 68.60 1.69 48.24 16 4 H -0.28 -13.27 6.92 99.48 0.69 -12.58 16 5 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 6 H -0.27 -12.56 7.10 99.48 0.71 -11.85 16 7 C -0.27 -14.90 9.64 84.03 0.81 -14.09 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 9 N -0.61 -27.25 2.94 -722.44 -2.13 -29.38 16 10 C 0.15 6.43 4.83 86.31 0.42 6.84 16 11 C -0.12 -3.63 4.78 30.10 0.14 -3.48 16 12 C -0.08 -2.29 3.65 -9.62 -0.04 -2.32 16 13 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 14 C 0.12 3.30 6.25 87.04 0.54 3.84 16 15 N -0.61 -17.42 3.34 -818.88 -2.74 -20.16 16 16 C 0.59 20.12 7.64 85.10 0.65 20.77 16 17 O -0.58 -24.13 16.83 -4.66 -0.08 -24.21 16 18 C -0.07 -2.14 6.80 39.37 0.27 -1.87 16 19 C -0.12 -2.67 9.02 22.46 0.20 -2.46 16 20 C -0.17 -3.09 10.92 22.54 0.25 -2.85 16 21 C 0.00 -0.08 6.80 39.20 0.27 0.19 16 22 C -0.02 -0.25 10.11 22.40 0.23 -0.02 16 23 C -0.18 -1.42 10.04 22.23 0.22 -1.19 16 24 C 0.13 1.79 11.29 85.29 0.96 2.75 16 25 N -0.31 -8.35 11.33 -57.06 -0.65 -9.00 16 26 N -0.24 -6.63 4.01 -180.11 -0.72 -7.35 16 27 C 0.10 2.51 3.78 86.57 0.33 2.84 16 28 C -0.10 -2.64 2.84 -10.99 -0.03 -2.67 16 29 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 30 C 0.17 6.16 5.75 85.81 0.49 6.65 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.00 -0.17 2.99 -2.39 -0.01 -0.18 16 33 H 0.02 1.07 8.12 -2.38 -0.02 1.05 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.12 6.60 -2.39 -0.02 2.11 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.91 7.79 -2.38 -0.02 1.89 16 38 H 0.19 3.60 4.51 -2.91 -0.01 3.59 16 39 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.20 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 42 H 0.23 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.08 2.05 6.77 -2.38 -0.02 2.03 16 44 H 0.11 2.27 5.77 -2.39 -0.01 2.26 16 45 H 0.03 0.99 8.13 -2.39 -0.02 0.97 16 46 H 0.03 1.17 7.80 -2.38 -0.02 1.15 16 Total: -1.00 -84.58 357.21 2.84 -81.74 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.99 Total: 5.59 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.16 Total: 12.35 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -5.93 Total: -123.71 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.08 Total: -24.21 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.69 Total: 48.24 kcal Total: -84.58 2.84 -81.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088132444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.382 kcal (2) G-P(sol) polarization free energy of solvation -84.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds