Wall clock time and date at job start Sat Apr 11 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47402 * 300.00042 * 3 2 1 6 6 H 1.48501 * 109.46925 * 60.00155 * 3 2 1 7 7 C 1.38812 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00246 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.32297 * 51.40435 * 10 9 7 12 12 C 1.53028 * 109.32823 * 291.92981 * 10 9 7 13 13 C 1.53963 * 108.82476 * 295.14663 * 12 10 9 14 14 H 1.08999 * 112.99455 * 168.99708 * 13 12 10 15 15 C 1.55428 * 106.41737 * 293.81346 * 13 12 10 16 16 C 1.55172 * 100.35409 * 73.37771 * 15 13 12 17 17 H 1.09000 * 112.48691 * 163.35362 * 16 15 13 18 18 C 1.52987 * 109.32683 * 171.04185 * 10 9 7 19 19 N 1.47790 * 104.25036 * 40.55924 * 16 15 13 20 20 C 1.34774 * 125.85560 * 153.53271 * 19 16 15 21 21 O 1.21651 * 120.00379 * 359.97438 * 20 19 16 22 22 C 1.47284 * 119.99834 * 179.97438 * 20 19 16 23 23 C 1.38444 * 120.02781 * 179.71800 * 22 20 19 24 24 C 1.40654 * 118.26675 * 179.76710 * 23 22 20 25 25 C 1.38257 * 133.39884 * 180.21401 * 24 23 22 26 26 C 1.39676 * 106.99967 * 180.27165 * 25 24 23 27 27 C 1.35650 * 108.07959 * 0.02562 * 26 25 24 28 28 N 1.35911 * 109.05908 * 359.97438 * 27 26 25 29 29 C 1.36910 * 132.42329 * 180.02562 * 28 27 26 30 30 N 1.29797 * 121.47336 * 179.97438 * 29 28 27 31 31 C 1.47087 * 108.28920 * 333.52638 * 19 16 15 32 32 H 0.96998 * 120.00045 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00136 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.57420 * 54.94638 * 12 10 9 35 35 H 1.08999 * 109.58356 * 175.20636 * 12 10 9 36 36 H 1.08992 * 111.23880 * 191.16003 * 15 13 12 37 37 H 1.09010 * 111.23388 * 315.56128 * 15 13 12 38 38 H 1.08993 * 109.53613 * 185.06875 * 18 10 9 39 39 H 1.08999 * 109.53120 * 305.29567 * 18 10 9 40 40 H 1.08003 * 120.86123 * 0.02804 * 23 22 20 41 41 H 1.08003 * 126.50256 * 0.24494 * 25 24 23 42 42 H 1.07995 * 125.96642 * 179.97438 * 26 25 24 43 43 H 1.08000 * 125.47217 * 180.02562 * 27 26 25 44 44 H 1.07994 * 119.26172 * 359.97438 * 29 28 27 45 45 H 1.08999 * 109.97881 * 241.75918 * 31 19 16 46 46 H 1.08994 * 109.97509 * 120.46389 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.7942 -3.6490 0.8012 12 6 2.7784 -3.8245 -1.3424 13 6 1.7266 -3.9459 -2.4602 14 1 2.1571 -3.8769 -3.4592 15 6 0.9718 -5.2813 -2.2099 16 6 0.1143 -4.8902 -0.9772 17 1 -0.7071 -5.5852 -0.8033 18 6 1.0763 -4.8085 0.2210 19 7 -0.3440 -3.5168 -1.2738 20 6 -1.4655 -2.9391 -0.7996 21 8 -2.2025 -3.5600 -0.0572 22 6 -1.7989 -1.5559 -1.1803 23 6 -2.9538 -0.9639 -0.6981 24 6 -3.2335 0.3602 -1.0813 25 6 -4.2646 1.2350 -0.7928 26 6 -3.9960 2.4227 -1.4770 27 6 -2.8339 2.2625 -2.1582 28 7 -2.3540 1.0117 -1.9293 29 6 -1.2350 0.3570 -2.3691 30 7 -0.9782 -0.8633 -2.0088 31 6 0.6338 -2.8885 -2.1752 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 3.4106 -2.9562 -1.5284 35 1 3.3926 -4.7246 -1.3168 36 1 0.3433 -5.5450 -3.0605 37 1 1.6649 -6.0876 -1.9697 38 1 1.6271 -5.7447 0.3107 39 1 0.5074 -4.6302 1.1335 40 1 -3.6203 -1.5034 -0.0415 41 1 -5.1164 1.0373 -0.1590 42 1 -4.6072 3.3129 -1.4664 43 1 -2.3649 3.0093 -2.7817 44 1 -0.5506 0.8672 -3.0306 45 1 1.0764 -2.0160 -1.6946 46 1 0.1478 -2.5952 -3.1056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094946987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:28 Heat of formation + Delta-G solvation = 151.771155 kcal Electronic energy + Delta-G solvation = -32445.276629 eV Core-core repulsion = 28532.664238 eV Total energy + Delta-G solvation = -3912.612391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68495 -40.86194 -38.00466 -36.48839 -34.17054 -32.75991 -32.34914 -31.14795 -30.59648 -30.11994 -27.95230 -27.43217 -25.03548 -23.88741 -23.65345 -22.91073 -21.26620 -21.04729 -20.49172 -19.12082 -18.61372 -17.84148 -17.22732 -16.56731 -15.65861 -15.29717 -15.09628 -14.81554 -14.69792 -14.34646 -14.14853 -13.69453 -13.66431 -13.17577 -12.99783 -12.81291 -12.37426 -12.11125 -12.04763 -12.01010 -11.92738 -11.74774 -11.50291 -11.48605 -11.37728 -11.10150 -10.85693 -10.68162 -10.35478 -10.19304 -9.91593 -9.82833 -9.69569 -9.58327 -9.45908 -8.95627 -8.61781 -8.29717 -7.70840 -6.86831 -6.55508 -5.83315 -3.11571 1.24155 2.02775 3.25187 3.29947 3.40340 3.41376 3.42513 3.44970 3.62936 4.47564 4.53128 4.84318 4.96750 5.11758 5.20844 5.22946 5.30957 5.39413 5.45426 5.60704 5.71279 5.72715 5.80862 5.83644 5.89366 5.89877 6.02652 6.07698 6.10872 6.17253 6.21925 6.27376 6.37023 6.41189 6.61108 6.63961 6.69754 6.78233 6.84639 6.90738 6.92012 7.11226 7.24682 7.30145 7.62466 7.77848 7.83299 8.23499 8.30639 8.52726 8.90579 9.43952 10.03045 10.41983 11.29966 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.006124 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.355255 B = 4570.977865 C = 5908.907558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.723 5.723 10 C 0.172 3.828 11 H 0.034 0.966 12 C -0.128 4.128 13 C -0.100 4.100 14 H 0.084 0.916 15 C -0.129 4.129 16 C 0.133 3.867 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.579 5.579 20 C 0.595 3.405 21 O -0.562 6.562 22 C 0.099 3.901 23 C -0.076 4.076 24 C 0.066 3.934 25 C -0.214 4.214 26 C -0.151 4.151 27 C -0.058 4.058 28 N -0.370 5.370 29 C 0.300 3.700 30 N -0.384 5.384 31 C 0.084 3.916 32 H 0.250 0.750 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.162 0.838 44 H 0.186 0.814 45 H 0.176 0.824 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 -2.991 -7.592 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.052 0.948 12 C -0.168 4.168 13 C -0.119 4.119 14 H 0.102 0.898 15 C -0.167 4.167 16 C 0.029 3.971 17 H 0.107 0.893 18 C -0.173 4.173 19 N -0.311 5.311 20 C 0.386 3.614 21 O -0.442 6.442 22 C -0.021 4.021 23 C -0.099 4.099 24 C -0.042 4.042 25 C -0.239 4.239 26 C -0.174 4.174 27 C -0.189 4.189 28 N -0.041 5.041 29 C 0.017 3.983 30 N -0.095 5.095 31 C -0.037 4.037 32 H 0.062 0.938 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.202 0.798 45 H 0.193 0.807 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.977 -3.818 -7.457 8.434 hybrid contribution -0.176 1.585 0.649 1.722 sum -1.153 -2.232 -6.808 7.257 Atomic orbital electron populations 1.69782 1.04832 1.24302 1.57678 1.24553 0.95333 0.97031 1.03222 0.86212 0.78958 0.84507 0.77044 1.20781 1.22076 1.22323 1.19246 0.91143 0.84307 1.41824 0.91343 1.43672 1.07186 0.99581 1.86986 1.20190 0.92700 0.86569 0.94341 0.94834 1.22266 0.97198 1.00348 0.96952 1.22592 0.96525 0.94380 0.98367 0.89788 1.23029 0.98549 0.97975 0.97159 1.22157 0.95516 0.84333 0.95078 0.89315 1.22280 0.97883 0.98948 0.98210 1.48421 1.21853 1.13651 1.47159 1.17180 0.79629 0.84854 0.79774 1.90741 1.51012 1.64555 1.37912 1.20003 0.91190 0.93515 0.97362 1.21230 0.98128 0.91478 0.99022 1.18694 0.93181 0.93585 0.98742 1.20818 1.00804 0.93928 1.08310 1.20759 0.97345 0.98642 1.00676 1.21630 0.99654 0.87089 1.10537 1.43064 1.17220 1.11826 1.31998 1.24233 0.86825 0.89784 0.97431 1.68156 1.24243 1.05649 1.11410 1.23384 0.87716 1.00423 0.92168 0.93847 0.76373 0.91502 0.93480 0.91732 0.90495 0.91348 0.91786 0.83839 0.84426 0.84434 0.82076 0.79791 0.80720 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -23.46 7.53 55.49 0.42 -23.05 16 2 C -0.01 -0.14 5.38 -17.43 -0.09 -0.23 16 3 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.23 -5.83 7.89 -15.06 -0.12 -5.94 16 8 H 0.07 1.70 7.71 -52.49 -0.40 1.30 16 9 N -0.72 -16.71 2.80 -53.42 -0.15 -16.86 16 10 C 0.17 3.31 3.13 -67.92 -0.21 3.10 16 11 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.13 -2.11 5.19 -26.21 -0.14 -2.24 16 13 C -0.10 -1.56 4.33 -87.93 -0.38 -1.94 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.13 -1.81 6.18 -24.29 -0.15 -1.96 16 16 C 0.13 2.27 3.98 -65.61 -0.26 2.01 16 17 H 0.09 1.50 8.04 -51.93 -0.42 1.08 16 18 C -0.13 -2.34 5.42 -26.28 -0.14 -2.48 16 19 N -0.58 -11.54 1.72 -163.11 -0.28 -11.82 16 20 C 0.60 13.36 6.10 -12.58 -0.08 13.28 16 21 O -0.56 -13.57 16.61 5.23 0.09 -13.48 16 22 C 0.10 2.15 4.66 -82.43 -0.38 1.76 16 23 C -0.08 -1.57 9.72 -38.59 -0.38 -1.95 16 24 C 0.07 1.27 6.78 -83.95 -0.57 0.70 16 25 C -0.21 -3.59 10.98 -39.04 -0.43 -4.02 16 26 C -0.15 -2.26 10.80 -39.97 -0.43 -2.69 16 27 C -0.06 -0.89 11.61 -16.67 -0.19 -1.08 16 28 N -0.37 -6.65 2.87 -62.17 -0.18 -6.83 16 29 C 0.30 5.53 10.13 -89.22 -0.90 4.62 16 30 N -0.38 -7.84 5.19 -10.42 -0.05 -7.89 16 31 C 0.08 1.61 3.90 -2.82 -0.01 1.60 16 32 H 0.25 6.56 7.45 -40.82 -0.30 6.25 16 33 H 0.39 9.57 3.01 -40.82 -0.12 9.45 16 34 H 0.07 1.19 7.62 -51.93 -0.40 0.80 16 35 H 0.05 0.66 7.98 -51.93 -0.41 0.25 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.92 7.75 -51.92 -0.40 0.52 16 38 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.14 2.86 7.66 -52.48 -0.40 2.46 16 41 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 42 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.19 2.86 8.06 -52.49 -0.42 2.43 16 45 H 0.18 3.88 3.22 -58.49 -0.19 3.69 16 46 H 0.04 0.76 7.41 -51.93 -0.38 0.38 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -28.96 344.42 -10.89 -39.85 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -6.03 Total: 16.56 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -4.87 Total: 2.53 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.24 Total: -66.45 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.96 -10.89 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094946987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.625 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds