Wall clock time and date at job start Sat Apr 11 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47402 * 300.00042 * 3 2 1 6 6 H 1.48501 * 109.46925 * 60.00155 * 3 2 1 7 7 C 1.38812 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00246 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.32297 * 51.40435 * 10 9 7 12 12 C 1.53028 * 109.32823 * 291.92981 * 10 9 7 13 13 C 1.53963 * 108.82476 * 295.14663 * 12 10 9 14 14 H 1.08999 * 112.99455 * 168.99708 * 13 12 10 15 15 C 1.55428 * 106.41737 * 293.81346 * 13 12 10 16 16 C 1.55172 * 100.35409 * 73.37771 * 15 13 12 17 17 H 1.09000 * 112.48691 * 163.35362 * 16 15 13 18 18 C 1.52987 * 109.32683 * 171.04185 * 10 9 7 19 19 N 1.47790 * 104.25036 * 40.55924 * 16 15 13 20 20 C 1.34774 * 125.85560 * 153.53271 * 19 16 15 21 21 O 1.21651 * 120.00379 * 359.97438 * 20 19 16 22 22 C 1.47284 * 119.99834 * 179.97438 * 20 19 16 23 23 C 1.38444 * 120.02781 * 179.71800 * 22 20 19 24 24 C 1.40654 * 118.26675 * 179.76710 * 23 22 20 25 25 C 1.38257 * 133.39884 * 180.21401 * 24 23 22 26 26 C 1.39676 * 106.99967 * 180.27165 * 25 24 23 27 27 C 1.35650 * 108.07959 * 0.02562 * 26 25 24 28 28 N 1.35911 * 109.05908 * 359.97438 * 27 26 25 29 29 C 1.36910 * 132.42329 * 180.02562 * 28 27 26 30 30 N 1.29797 * 121.47336 * 179.97438 * 29 28 27 31 31 C 1.47087 * 108.28920 * 333.52638 * 19 16 15 32 32 H 0.96998 * 120.00045 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00136 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.57420 * 54.94638 * 12 10 9 35 35 H 1.08999 * 109.58356 * 175.20636 * 12 10 9 36 36 H 1.08992 * 111.23880 * 191.16003 * 15 13 12 37 37 H 1.09010 * 111.23388 * 315.56128 * 15 13 12 38 38 H 1.08993 * 109.53613 * 185.06875 * 18 10 9 39 39 H 1.08999 * 109.53120 * 305.29567 * 18 10 9 40 40 H 1.08003 * 120.86123 * 0.02804 * 23 22 20 41 41 H 1.08003 * 126.50256 * 0.24494 * 25 24 23 42 42 H 1.07995 * 125.96642 * 179.97438 * 26 25 24 43 43 H 1.08000 * 125.47217 * 180.02562 * 27 26 25 44 44 H 1.07994 * 119.26172 * 359.97438 * 29 28 27 45 45 H 1.08999 * 109.97881 * 241.75918 * 31 19 16 46 46 H 1.08994 * 109.97509 * 120.46389 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.7942 -3.6490 0.8012 12 6 2.7784 -3.8245 -1.3424 13 6 1.7266 -3.9459 -2.4602 14 1 2.1571 -3.8769 -3.4592 15 6 0.9718 -5.2813 -2.2099 16 6 0.1143 -4.8902 -0.9772 17 1 -0.7071 -5.5852 -0.8033 18 6 1.0763 -4.8085 0.2210 19 7 -0.3440 -3.5168 -1.2738 20 6 -1.4655 -2.9391 -0.7996 21 8 -2.2025 -3.5600 -0.0572 22 6 -1.7989 -1.5559 -1.1803 23 6 -2.9538 -0.9639 -0.6981 24 6 -3.2335 0.3602 -1.0813 25 6 -4.2646 1.2350 -0.7928 26 6 -3.9960 2.4227 -1.4770 27 6 -2.8339 2.2625 -2.1582 28 7 -2.3540 1.0117 -1.9293 29 6 -1.2350 0.3570 -2.3691 30 7 -0.9782 -0.8633 -2.0088 31 6 0.6338 -2.8885 -2.1752 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 3.4106 -2.9562 -1.5284 35 1 3.3926 -4.7246 -1.3168 36 1 0.3433 -5.5450 -3.0605 37 1 1.6649 -6.0876 -1.9697 38 1 1.6271 -5.7447 0.3107 39 1 0.5074 -4.6302 1.1335 40 1 -3.6203 -1.5034 -0.0415 41 1 -5.1164 1.0373 -0.1590 42 1 -4.6072 3.3129 -1.4664 43 1 -2.3649 3.0093 -2.7817 44 1 -0.5506 0.8672 -3.0306 45 1 1.0764 -2.0160 -1.6946 46 1 0.1478 -2.5952 -3.1056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094946987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:27 Heat of formation + Delta-G solvation = 139.161291 kcal Electronic energy + Delta-G solvation = -32445.823434 eV Core-core repulsion = 28532.664238 eV Total energy + Delta-G solvation = -3913.159196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04537 -42.30249 -39.56711 -37.95539 -35.85827 -34.30706 -33.78456 -32.71765 -32.07234 -31.48689 -29.47428 -28.84988 -26.51752 -25.40857 -25.26896 -24.32802 -22.65291 -22.48321 -21.77566 -20.51497 -20.08553 -19.42775 -18.81822 -18.03538 -17.18607 -16.89091 -16.51604 -16.39148 -16.22612 -15.79726 -15.70364 -15.31115 -14.98338 -14.87440 -14.46194 -14.21032 -13.76979 -13.50809 -13.42259 -13.30789 -13.21666 -13.14031 -13.05562 -13.01796 -12.90860 -12.68827 -12.51923 -12.29244 -11.99388 -11.77512 -11.42054 -11.28801 -11.25790 -11.21424 -10.88372 -10.46253 -10.31477 -9.62293 -9.29113 -8.44854 -8.13814 -7.69552 -5.00220 -0.25418 0.66423 1.43787 1.51659 1.55474 1.81702 1.98449 2.15432 2.17351 2.61617 3.02601 3.43926 3.53096 3.63878 3.79595 3.86453 3.92185 3.96132 4.14651 4.22811 4.25064 4.42179 4.45740 4.48849 4.51139 4.54437 4.71358 4.76914 4.80999 4.87340 4.89529 5.00510 5.09411 5.11031 5.17487 5.32229 5.33591 5.42765 5.44808 5.49467 5.54796 5.66491 5.71789 5.85389 6.03019 6.26876 6.38312 6.52353 6.67376 7.03718 7.33822 7.50514 8.25198 8.55097 9.38276 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.006124 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.355255 B = 4570.977865 C = 5908.907558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.043 4.043 3 Si 0.947 3.053 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.319 1.319 7 C -0.236 4.236 8 H 0.063 0.937 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.020 0.980 12 C -0.117 4.117 13 C -0.093 4.093 14 H 0.112 0.888 15 C -0.110 4.110 16 C 0.119 3.881 17 H 0.087 0.913 18 C -0.127 4.127 19 N -0.575 5.575 20 C 0.580 3.420 21 O -0.599 6.599 22 C 0.075 3.925 23 C -0.087 4.087 24 C 0.027 3.973 25 C -0.210 4.210 26 C -0.150 4.150 27 C -0.047 4.047 28 N -0.378 5.378 29 C 0.297 3.703 30 N -0.399 5.399 31 C 0.083 3.917 32 H 0.239 0.761 33 H 0.385 0.615 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.028 0.972 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.199 0.801 44 H 0.211 0.789 45 H 0.148 0.852 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -2.768 -9.645 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.238 4.238 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.248 1.248 7 C -0.368 4.368 8 H 0.081 0.919 9 N -0.386 5.386 10 C 0.053 3.947 11 H 0.038 0.962 12 C -0.156 4.156 13 C -0.112 4.112 14 H 0.130 0.870 15 C -0.148 4.148 16 C 0.016 3.984 17 H 0.105 0.895 18 C -0.165 4.165 19 N -0.305 5.305 20 C 0.371 3.629 21 O -0.483 6.483 22 C -0.044 4.044 23 C -0.109 4.109 24 C -0.080 4.080 25 C -0.236 4.236 26 C -0.172 4.172 27 C -0.178 4.178 28 N -0.050 5.050 29 C 0.014 3.986 30 N -0.109 5.109 31 C -0.038 4.038 32 H 0.050 0.950 33 H 0.228 0.772 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.047 0.953 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.192 0.808 43 H 0.216 0.784 44 H 0.228 0.772 45 H 0.165 0.835 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.056 -3.638 -9.538 10.208 hybrid contribution -0.550 1.643 1.330 2.184 sum -0.494 -1.995 -8.208 8.461 Atomic orbital electron populations 1.69989 1.05181 1.23632 1.58222 1.25023 0.95963 0.98745 1.04024 0.85483 0.78186 0.82219 0.76095 1.20613 1.21047 1.24799 1.19316 0.90883 0.85256 1.41305 0.91898 1.43847 1.07051 1.00465 1.87190 1.20448 0.92782 0.85732 0.95770 0.96190 1.22126 0.97118 1.01303 0.95063 1.22626 0.95122 0.94019 0.99388 0.86981 1.23012 0.98255 0.97827 0.95676 1.22469 0.95973 0.83137 0.96825 0.89494 1.22238 0.97484 1.00010 0.96775 1.48532 1.20979 1.14694 1.46306 1.17528 0.80215 0.85411 0.79715 1.90684 1.52398 1.65497 1.39708 1.19976 0.92007 0.93571 0.98855 1.21292 0.98003 0.92618 0.99031 1.18844 0.94814 0.93609 1.00747 1.21258 1.00366 0.94228 1.07738 1.21234 0.97479 0.99024 0.99513 1.22450 0.99411 0.86398 1.09572 1.43197 1.17048 1.12647 1.32100 1.24740 0.87173 0.89535 0.97123 1.68096 1.24326 1.06648 1.11858 1.23268 0.88329 1.00934 0.91294 0.95043 0.77235 0.93171 0.89892 0.90342 0.87051 0.87287 0.95312 0.84885 0.83007 0.80781 0.78425 0.77241 0.83495 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.33 7.53 21.65 0.16 -48.16 16 2 C -0.04 -2.19 5.38 84.86 0.46 -1.74 16 3 Si 0.95 43.16 29.55 68.60 2.03 45.18 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.32 -15.65 7.11 99.48 0.71 -14.94 16 7 C -0.24 -11.94 7.89 84.03 0.66 -11.28 16 8 H 0.06 3.18 7.71 -2.91 -0.02 3.16 16 9 N -0.74 -34.68 2.80 -322.93 -0.90 -35.58 16 10 C 0.16 6.13 3.13 45.00 0.14 6.27 16 11 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 12 C -0.12 -3.54 5.19 30.93 0.16 -3.38 16 13 C -0.09 -2.63 4.33 -9.05 -0.04 -2.67 16 14 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 15 C -0.11 -2.67 6.18 32.17 0.20 -2.48 16 16 C 0.12 3.96 3.98 45.79 0.18 4.14 16 17 H 0.09 2.92 8.04 -2.39 -0.02 2.90 16 18 C -0.13 -4.29 5.42 30.89 0.17 -4.13 16 19 N -0.58 -23.32 1.72 -788.19 -1.36 -24.68 16 20 C 0.58 27.42 6.10 86.62 0.53 27.95 16 21 O -0.60 -30.87 16.61 -4.19 -0.07 -30.94 16 22 C 0.07 3.40 4.66 40.98 0.19 3.59 16 23 C -0.09 -3.80 9.72 22.91 0.22 -3.57 16 24 C 0.03 1.03 6.78 38.69 0.26 1.30 16 25 C -0.21 -6.87 10.98 22.62 0.25 -6.62 16 26 C -0.15 -4.05 10.80 22.02 0.24 -3.81 16 27 C -0.05 -1.32 11.61 83.46 0.97 -0.35 16 28 N -0.38 -13.34 2.87 -350.61 -1.00 -14.34 16 29 C 0.30 10.92 10.13 179.86 1.82 12.74 16 30 N -0.40 -16.69 5.19 -186.89 -0.97 -17.66 16 31 C 0.08 3.14 3.90 86.85 0.34 3.48 16 32 H 0.24 12.79 7.45 -92.71 -0.69 12.10 16 33 H 0.39 19.46 3.01 -92.70 -0.28 19.18 16 34 H 0.05 1.70 7.62 -2.39 -0.02 1.68 16 35 H 0.08 1.96 7.98 -2.39 -0.02 1.94 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 2.02 7.75 -2.38 -0.02 2.00 16 38 H 0.11 2.77 8.00 -2.39 -0.02 2.75 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.13 5.82 7.66 -2.91 -0.02 5.79 16 41 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 44 H 0.21 6.26 8.06 -2.91 -0.02 6.24 16 45 H 0.15 6.59 3.22 -15.34 -0.05 6.54 16 46 H 0.04 1.38 7.41 -2.39 -0.02 1.36 16 Total: -1.00 -67.06 344.42 5.41 -61.65 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: 0.77 Total: 45.11 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.75 Total: 19.42 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -4.07 Total: -140.43 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.07 Total: -30.94 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.06 5.41 -61.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094946987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.810 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds