Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99920 * 2 1 4 4 H 1.48493 * 109.47350 * 270.00052 * 3 2 1 5 5 H 1.48500 * 109.47270 * 30.00309 * 3 2 1 6 6 H 1.48503 * 109.47027 * 150.00135 * 3 2 1 7 7 C 1.38815 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99344 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.46490 * 120.00149 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.18122 * 35.44560 * 10 9 7 12 12 C 1.53030 * 109.32763 * 155.00091 * 10 9 7 13 13 C 1.53965 * 108.83532 * 175.67773 * 12 10 9 14 14 H 1.08995 * 112.99929 * 168.09668 * 13 12 10 15 15 C 1.55424 * 107.20084 * 293.48472 * 13 12 10 16 16 C 1.56615 * 99.72101 * 72.68676 * 15 13 12 17 17 H 1.09002 * 112.21572 * 163.88449 * 16 15 13 18 18 C 1.52982 * 109.32812 * 275.88873 * 10 9 7 19 19 N 1.47943 * 103.51471 * 42.25228 * 16 15 13 20 20 C 1.34778 * 125.91505 * 153.05365 * 19 16 15 21 21 O 1.21643 * 120.00312 * 358.32817 * 20 19 16 22 22 C 1.47272 * 119.99816 * 178.33192 * 20 19 16 23 23 C 1.38446 * 120.02982 * 180.02562 * 22 20 19 24 24 C 1.40654 * 118.27020 * 179.97438 * 23 22 20 25 25 C 1.38260 * 133.40129 * 179.97438 * 24 23 22 26 26 C 1.39672 * 106.99921 * 180.02562 * 25 24 23 27 27 C 1.35648 * 108.08461 * 0.02562 * 26 25 24 28 28 N 1.35918 * 109.05492 * 359.97438 * 27 26 25 29 29 C 1.36907 * 132.42410 * 180.02562 * 28 27 26 30 30 N 1.29798 * 121.48112 * 179.72808 * 29 28 27 31 31 C 1.47080 * 108.21114 * 331.60922 * 19 16 15 32 32 H 0.97000 * 119.99759 * 359.97438 * 1 2 3 33 33 H 0.97004 * 119.99874 * 359.97438 * 9 7 2 34 34 H 1.08998 * 109.57542 * 55.86985 * 12 10 9 35 35 H 1.09003 * 109.57875 * 295.48280 * 12 10 9 36 36 H 1.09003 * 111.24048 * 191.43352 * 15 13 12 37 37 H 1.09004 * 111.23906 * 315.88409 * 15 13 12 38 38 H 1.08998 * 109.53716 * 304.52850 * 18 10 9 39 39 H 1.09005 * 109.53298 * 64.75689 * 18 10 9 40 40 H 1.07994 * 120.86350 * 359.97438 * 23 22 20 41 41 H 1.07997 * 126.49882 * 359.97438 * 25 24 23 42 42 H 1.07999 * 125.96138 * 180.02562 * 26 25 24 43 43 H 1.07997 * 125.47624 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.25954 * 0.02562 * 29 28 27 45 45 H 1.09002 * 109.97671 * 243.14792 * 31 19 16 46 46 H 1.09000 * 109.97448 * 121.90399 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9635 -3.5476 0.5965 12 6 1.1779 -4.7498 0.6097 13 6 1.9148 -6.0975 0.5052 14 1 1.4487 -6.8849 1.0975 15 6 2.0189 -6.4485 -1.0053 16 6 3.1048 -5.4087 -1.4442 17 1 3.5427 -5.6536 -2.4119 18 6 2.4395 -4.0212 -1.4365 19 7 4.0939 -5.4570 -0.3450 20 6 5.4062 -5.1681 -0.4491 21 8 5.8778 -4.8613 -1.5276 22 6 6.2693 -5.2240 0.7429 23 6 7.6173 -4.9269 0.6368 24 6 8.4072 -4.9914 1.7989 25 6 9.7479 -4.7658 2.0500 26 6 9.9514 -4.9902 3.4134 27 6 8.7627 -5.3417 3.9644 28 7 7.8092 -5.3477 2.9958 29 6 6.4692 -5.6269 3.0207 30 7 5.7429 -5.5605 1.9470 31 6 3.3915 -5.8409 0.8889 32 1 -0.4850 0.8401 0.0004 33 1 0.3556 -2.3881 0.0002 34 1 0.2351 -4.8058 0.0655 35 1 0.9838 -4.5199 1.6574 36 1 2.3476 -7.4777 -1.1499 37 1 1.0765 -6.2613 -1.5201 38 1 1.5437 -4.0432 -2.0572 39 1 3.1370 -3.2804 -1.8275 40 1 8.0511 -4.6527 -0.3134 41 1 10.4961 -4.4727 1.3284 42 1 10.8913 -4.8996 3.9377 43 1 8.6000 -5.5787 5.0054 44 1 6.0050 -5.9041 3.9556 45 1 3.4517 -5.0333 1.6184 46 1 3.8323 -6.7485 1.3012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094946988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 84.704752 kcal Electronic energy + Delta-G solvation = -29968.683572 eV Core-core repulsion = 26053.162964 eV Total energy + Delta-G solvation = -3915.520609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.61100 -40.71761 -38.59806 -37.34671 -34.74975 -33.35014 -32.63114 -31.25862 -31.15965 -30.43253 -28.56674 -27.82192 -25.58399 -24.70836 -23.69563 -23.62101 -21.77096 -21.24737 -21.01060 -19.60581 -19.11608 -18.34675 -17.38137 -17.09339 -16.24609 -16.09696 -15.93511 -15.60157 -15.08208 -14.72191 -14.55131 -14.39185 -13.81272 -13.44303 -13.36733 -12.94734 -12.87961 -12.79692 -12.71235 -12.56916 -12.42155 -12.16062 -12.11919 -11.64758 -11.58913 -11.04016 -10.96925 -10.82341 -10.81812 -10.50967 -10.33703 -10.14389 -10.00242 -9.76921 -9.60849 -9.50226 -9.23248 -8.85271 -8.38750 -7.73463 -6.91696 -5.73804 -3.01762 0.22524 0.94519 2.28657 2.58214 2.68448 3.04328 3.45681 3.51155 3.52550 3.62254 3.74307 4.27267 4.35306 4.53983 4.60817 4.68414 4.75844 4.90535 5.01367 5.05049 5.19157 5.32528 5.41501 5.46193 5.50801 5.52210 5.57014 5.75649 5.80313 5.84943 5.91183 5.92189 6.00718 6.03864 6.17353 6.22730 6.27513 6.31222 6.42097 6.43311 6.53260 6.63435 6.72963 6.81874 7.03748 7.13298 7.40236 7.71835 7.74544 8.27491 8.45464 9.56585 10.14378 10.49407 11.48922 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.003772 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.804941 B = 7420.698092 C = 8994.352494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.066 0.934 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.048 0.952 12 C -0.120 4.120 13 C -0.104 4.104 14 H 0.095 0.905 15 C -0.126 4.126 16 C 0.133 3.867 17 H 0.091 0.909 18 C -0.142 4.142 19 N -0.588 5.588 20 C 0.591 3.409 21 O -0.541 6.541 22 C 0.019 3.981 23 C -0.041 4.041 24 C 0.028 3.972 25 C -0.173 4.173 26 C -0.147 4.147 27 C -0.029 4.029 28 N -0.387 5.387 29 C 0.303 3.697 30 N -0.457 5.457 31 C 0.123 3.877 32 H 0.254 0.746 33 H 0.383 0.617 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.176 0.824 44 H 0.208 0.792 45 H 0.080 0.920 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 -18.196 8.011 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.084 0.916 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.158 4.158 13 C -0.124 4.124 14 H 0.114 0.886 15 C -0.164 4.164 16 C 0.030 3.970 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.319 5.319 20 C 0.379 3.621 21 O -0.420 6.420 22 C -0.099 4.099 23 C -0.063 4.063 24 C -0.077 4.077 25 C -0.199 4.199 26 C -0.170 4.170 27 C -0.161 4.161 28 N -0.060 5.060 29 C 0.021 3.979 30 N -0.170 5.170 31 C 0.000 4.000 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.180 0.820 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.193 0.807 44 H 0.224 0.776 45 H 0.098 0.902 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.206 -18.057 7.330 23.541 hybrid contribution 0.964 1.297 0.075 1.618 sum 14.170 -16.760 7.406 23.163 Atomic orbital electron populations 1.69660 1.05020 1.25530 1.58053 1.24697 0.95478 0.97530 1.03171 0.86240 0.78667 0.84051 0.77600 1.21686 1.21751 1.20895 1.19212 0.90855 0.84204 1.42234 0.91559 1.42430 1.05681 0.99802 1.88528 1.20253 0.94311 0.85997 0.92537 0.93438 1.22097 0.98929 0.93301 1.01472 1.22705 0.95092 0.98278 0.96310 0.88643 1.23265 0.99121 0.97990 0.96067 1.22697 0.87205 0.96683 0.90377 0.89061 1.22788 1.00094 0.94027 1.01449 1.48375 1.06346 1.65618 1.11607 1.16968 0.80752 0.77674 0.86697 1.90816 1.73931 1.49527 1.27685 1.20792 0.92423 1.05095 0.91600 1.21671 0.92138 0.94518 0.97995 1.18890 0.94009 1.09072 0.85701 1.21156 0.92976 1.08802 0.96972 1.21048 0.97688 1.03921 0.94325 1.21979 0.87336 1.12331 0.94414 1.43195 1.08370 1.44638 1.09751 1.24885 0.78121 0.95772 0.99143 1.68460 1.34757 1.15749 0.97997 1.22224 0.90647 1.00614 0.86515 0.93595 0.78369 0.91738 0.91641 0.91219 0.89721 0.91351 0.91854 0.81980 0.83126 0.83106 0.80679 0.77615 0.90195 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.71 9.91 -15.06 -0.15 -6.86 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.46 5.11 -53.42 -0.27 -18.73 16 10 C 0.18 3.62 2.38 -67.93 -0.16 3.46 16 11 H 0.05 1.05 5.90 -51.93 -0.31 0.74 16 12 C -0.12 -1.90 4.96 -26.21 -0.13 -2.03 16 13 C -0.10 -1.30 4.27 -87.93 -0.38 -1.68 16 14 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.13 -1.55 6.31 -23.49 -0.15 -1.70 16 16 C 0.13 2.09 3.97 -64.73 -0.26 1.84 16 17 H 0.09 1.44 8.02 -51.93 -0.42 1.03 16 18 C -0.14 -2.71 5.31 -26.28 -0.14 -2.85 16 19 N -0.59 -9.39 2.44 -162.11 -0.40 -9.78 16 20 C 0.59 10.30 7.82 -12.59 -0.10 10.20 16 21 O -0.54 -10.83 16.60 5.24 0.09 -10.74 16 22 C 0.02 0.28 6.74 -82.43 -0.56 -0.28 16 23 C -0.04 -0.55 9.72 -38.59 -0.38 -0.93 16 24 C 0.03 0.33 6.78 -83.95 -0.57 -0.24 16 25 C -0.17 -1.70 10.98 -39.04 -0.43 -2.13 16 26 C -0.15 -1.17 10.80 -39.97 -0.43 -1.60 16 27 C -0.03 -0.23 11.62 -16.67 -0.19 -0.42 16 28 N -0.39 -3.91 2.95 -62.17 -0.18 -4.09 16 29 C 0.30 2.91 12.16 -89.22 -1.09 1.82 16 30 N -0.46 -5.79 6.90 -10.42 -0.07 -5.86 16 31 C 0.12 1.67 4.11 -2.83 -0.01 1.66 16 32 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.38 10.25 7.79 -40.82 -0.32 9.93 16 34 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 38 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.16 2.09 7.66 -52.49 -0.40 1.69 16 41 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.21 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.08 1.21 6.10 -51.93 -0.32 0.90 16 46 H 0.07 0.82 7.42 -51.93 -0.39 0.44 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -35.31 368.99 -11.09 -46.41 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.31 Total: 9.17 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -5.21 Total: -2.24 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.20 Total: -66.34 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.31 -11.09 -46.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094946988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.111 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds