Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99920 * 2 1 4 4 H 1.48493 * 109.47350 * 270.00052 * 3 2 1 5 5 H 1.48500 * 109.47270 * 30.00309 * 3 2 1 6 6 H 1.48503 * 109.47027 * 150.00135 * 3 2 1 7 7 C 1.38815 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99344 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.46490 * 120.00149 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.18122 * 35.44560 * 10 9 7 12 12 C 1.53030 * 109.32763 * 155.00091 * 10 9 7 13 13 C 1.53965 * 108.83532 * 175.67773 * 12 10 9 14 14 H 1.08995 * 112.99929 * 168.09668 * 13 12 10 15 15 C 1.55424 * 107.20084 * 293.48472 * 13 12 10 16 16 C 1.56615 * 99.72101 * 72.68676 * 15 13 12 17 17 H 1.09002 * 112.21572 * 163.88449 * 16 15 13 18 18 C 1.52982 * 109.32812 * 275.88873 * 10 9 7 19 19 N 1.47943 * 103.51471 * 42.25228 * 16 15 13 20 20 C 1.34778 * 125.91505 * 153.05365 * 19 16 15 21 21 O 1.21643 * 120.00312 * 358.32817 * 20 19 16 22 22 C 1.47272 * 119.99816 * 178.33192 * 20 19 16 23 23 C 1.38446 * 120.02982 * 180.02562 * 22 20 19 24 24 C 1.40654 * 118.27020 * 179.97438 * 23 22 20 25 25 C 1.38260 * 133.40129 * 179.97438 * 24 23 22 26 26 C 1.39672 * 106.99921 * 180.02562 * 25 24 23 27 27 C 1.35648 * 108.08461 * 0.02562 * 26 25 24 28 28 N 1.35918 * 109.05492 * 359.97438 * 27 26 25 29 29 C 1.36907 * 132.42410 * 180.02562 * 28 27 26 30 30 N 1.29798 * 121.48112 * 179.72808 * 29 28 27 31 31 C 1.47080 * 108.21114 * 331.60922 * 19 16 15 32 32 H 0.97000 * 119.99759 * 359.97438 * 1 2 3 33 33 H 0.97004 * 119.99874 * 359.97438 * 9 7 2 34 34 H 1.08998 * 109.57542 * 55.86985 * 12 10 9 35 35 H 1.09003 * 109.57875 * 295.48280 * 12 10 9 36 36 H 1.09003 * 111.24048 * 191.43352 * 15 13 12 37 37 H 1.09004 * 111.23906 * 315.88409 * 15 13 12 38 38 H 1.08998 * 109.53716 * 304.52850 * 18 10 9 39 39 H 1.09005 * 109.53298 * 64.75689 * 18 10 9 40 40 H 1.07994 * 120.86350 * 359.97438 * 23 22 20 41 41 H 1.07997 * 126.49882 * 359.97438 * 25 24 23 42 42 H 1.07999 * 125.96138 * 180.02562 * 26 25 24 43 43 H 1.07997 * 125.47624 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.25954 * 0.02562 * 29 28 27 45 45 H 1.09002 * 109.97671 * 243.14792 * 31 19 16 46 46 H 1.09000 * 109.97448 * 121.90399 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9635 -3.5476 0.5965 12 6 1.1779 -4.7498 0.6097 13 6 1.9148 -6.0975 0.5052 14 1 1.4487 -6.8849 1.0975 15 6 2.0189 -6.4485 -1.0053 16 6 3.1048 -5.4087 -1.4442 17 1 3.5427 -5.6536 -2.4119 18 6 2.4395 -4.0212 -1.4365 19 7 4.0939 -5.4570 -0.3450 20 6 5.4062 -5.1681 -0.4491 21 8 5.8778 -4.8613 -1.5276 22 6 6.2693 -5.2240 0.7429 23 6 7.6173 -4.9269 0.6368 24 6 8.4072 -4.9914 1.7989 25 6 9.7479 -4.7658 2.0500 26 6 9.9514 -4.9902 3.4134 27 6 8.7627 -5.3417 3.9644 28 7 7.8092 -5.3477 2.9958 29 6 6.4692 -5.6269 3.0207 30 7 5.7429 -5.5605 1.9470 31 6 3.3915 -5.8409 0.8889 32 1 -0.4850 0.8401 0.0004 33 1 0.3556 -2.3881 0.0002 34 1 0.2351 -4.8058 0.0655 35 1 0.9838 -4.5199 1.6574 36 1 2.3476 -7.4777 -1.1499 37 1 1.0765 -6.2613 -1.5201 38 1 1.5437 -4.0432 -2.0572 39 1 3.1370 -3.2804 -1.8275 40 1 8.0511 -4.6527 -0.3134 41 1 10.4961 -4.4727 1.3284 42 1 10.8913 -4.8996 3.9377 43 1 8.6000 -5.5787 5.0054 44 1 6.0050 -5.9041 3.9556 45 1 3.4517 -5.0333 1.6184 46 1 3.8323 -6.7485 1.3012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094946988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 64.260211 kcal Electronic energy + Delta-G solvation = -29969.570114 eV Core-core repulsion = 26053.162964 eV Total energy + Delta-G solvation = -3916.407151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.36150 -41.96889 -39.79690 -38.31630 -36.58788 -34.30750 -34.13150 -32.85650 -32.16533 -31.66025 -29.73593 -29.24285 -26.79177 -25.72041 -25.56234 -24.61896 -22.77723 -22.49122 -22.03331 -20.70842 -20.38675 -19.44440 -19.14016 -18.35609 -17.44959 -17.13725 -16.83051 -16.74405 -16.32001 -16.13566 -15.97274 -15.43923 -15.26636 -15.08527 -14.63906 -14.43513 -14.07401 -13.78531 -13.56662 -13.54329 -13.47597 -13.32738 -13.29816 -13.19120 -12.96220 -12.81758 -12.80306 -12.31023 -12.19168 -11.99191 -11.72142 -11.70652 -11.48080 -11.35304 -11.01080 -10.88198 -10.84842 -9.92732 -9.68312 -9.04326 -8.55441 -8.01232 -5.28482 -0.69327 0.18134 1.37470 1.39559 1.47513 1.55638 1.60877 1.89361 1.95265 2.48628 2.60305 2.89530 3.30159 3.37859 3.54635 3.60919 3.64876 3.72697 3.88313 4.06044 4.10513 4.20457 4.26951 4.29349 4.38623 4.43999 4.44415 4.59047 4.60937 4.63006 4.70331 4.78890 4.91998 4.96604 5.06347 5.13304 5.15211 5.19549 5.22759 5.32734 5.38234 5.43087 5.49321 5.52904 5.54718 5.72987 6.18793 6.22753 6.44648 6.60349 7.01614 7.28351 8.05313 8.30098 9.21681 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.003772 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.804941 B = 7420.698092 C = 8994.352494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.053 0.947 9 N -0.734 5.734 10 C 0.179 3.821 11 H 0.025 0.975 12 C -0.111 4.111 13 C -0.088 4.088 14 H 0.141 0.859 15 C -0.111 4.111 16 C 0.128 3.872 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.590 5.590 20 C 0.578 3.422 21 O -0.588 6.588 22 C -0.013 4.013 23 C -0.045 4.045 24 C -0.016 4.016 25 C -0.168 4.168 26 C -0.157 4.157 27 C -0.002 4.002 28 N -0.398 5.398 29 C 0.317 3.683 30 N -0.481 5.481 31 C 0.125 3.875 32 H 0.253 0.747 33 H 0.375 0.625 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.013 0.987 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.182 0.818 43 H 0.221 0.779 44 H 0.257 0.743 45 H 0.061 0.939 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.715 -20.487 11.213 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.792 3.208 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.071 0.929 9 N -0.374 5.374 10 C 0.071 3.929 11 H 0.043 0.957 12 C -0.149 4.149 13 C -0.107 4.107 14 H 0.159 0.841 15 C -0.149 4.149 16 C 0.025 3.975 17 H 0.103 0.897 18 C -0.173 4.173 19 N -0.320 5.320 20 C 0.368 3.632 21 O -0.470 6.470 22 C -0.130 4.130 23 C -0.068 4.068 24 C -0.120 4.120 25 C -0.194 4.194 26 C -0.178 4.178 27 C -0.133 4.133 28 N -0.071 5.071 29 C 0.035 3.965 30 N -0.193 5.193 31 C 0.003 3.997 32 H 0.062 0.938 33 H 0.208 0.792 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.199 0.801 43 H 0.238 0.762 44 H 0.272 0.728 45 H 0.080 0.920 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.968 -20.388 10.533 26.865 hybrid contribution 0.955 2.015 -0.790 2.366 sum 14.923 -18.373 9.743 25.597 Atomic orbital electron populations 1.69781 1.06116 1.26056 1.59317 1.25396 0.96375 1.00452 1.03698 0.85307 0.77661 0.80364 0.77469 1.21584 1.21050 1.20452 1.19372 0.90453 0.85897 1.41398 0.92943 1.42586 1.05402 1.00815 1.88624 1.20417 0.93956 0.85604 0.92931 0.95735 1.21997 0.98471 0.93622 1.00858 1.22776 0.93682 0.97121 0.97084 0.84083 1.23261 0.97931 0.98065 0.95616 1.22693 0.88382 0.95633 0.90817 0.89707 1.22589 0.99150 0.95278 1.00317 1.48522 1.06068 1.64933 1.12501 1.17551 0.81523 0.76933 0.87198 1.90756 1.74934 1.51726 1.29584 1.20433 0.92358 1.08271 0.91889 1.21652 0.92219 0.94327 0.98572 1.18942 0.94912 1.12023 0.86093 1.21582 0.92406 1.06900 0.98537 1.21523 0.99324 1.03623 0.93365 1.22873 0.86358 1.08481 0.95622 1.43420 1.08917 1.45179 1.09607 1.25825 0.77927 0.93119 0.99664 1.68363 1.35496 1.17644 0.97825 1.22318 0.91385 1.00843 0.85168 0.93801 0.79242 0.91112 0.91731 0.88268 0.88588 0.91248 0.96760 0.83294 0.82217 0.80057 0.76244 0.72796 0.92025 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.12 13.06 21.65 0.28 -59.84 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 3 Si 0.96 48.87 29.55 68.60 2.03 50.90 16 4 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 5 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -14.30 9.91 84.03 0.83 -13.47 16 8 H 0.05 3.22 7.83 -2.91 -0.02 3.20 16 9 N -0.73 -38.92 5.11 -322.94 -1.65 -40.58 16 10 C 0.18 7.51 2.38 45.00 0.11 7.62 16 11 H 0.02 1.15 5.90 -2.39 -0.01 1.13 16 12 C -0.11 -3.41 4.96 30.93 0.15 -3.26 16 13 C -0.09 -1.92 4.27 -9.05 -0.04 -1.96 16 14 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 15 C -0.11 -2.44 6.31 32.69 0.21 -2.23 16 16 C 0.13 4.12 3.97 46.27 0.18 4.30 16 17 H 0.08 2.82 8.02 -2.39 -0.02 2.81 16 18 C -0.13 -5.34 5.31 30.89 0.16 -5.18 16 19 N -0.59 -19.47 2.44 -785.03 -1.91 -21.38 16 20 C 0.58 21.72 7.82 86.62 0.68 22.40 16 21 O -0.59 -25.94 16.60 -4.17 -0.07 -26.01 16 22 C -0.01 -0.43 6.74 40.98 0.28 -0.15 16 23 C -0.04 -1.31 9.72 22.91 0.22 -1.09 16 24 C -0.02 -0.38 6.78 38.69 0.26 -0.12 16 25 C -0.17 -3.08 10.98 22.62 0.25 -2.83 16 26 C -0.16 -1.93 10.80 22.02 0.24 -1.69 16 27 C 0.00 -0.02 11.62 83.46 0.97 0.95 16 28 N -0.40 -7.09 2.95 -350.60 -1.04 -8.12 16 29 C 0.32 5.32 12.16 179.86 2.19 7.51 16 30 N -0.48 -11.98 6.90 -186.88 -1.29 -13.27 16 31 C 0.12 3.24 4.11 86.85 0.36 3.60 16 32 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.38 20.72 7.79 -92.71 -0.72 20.00 16 34 H 0.07 2.11 8.01 -2.39 -0.02 2.09 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.97 7.83 -2.38 -0.02 1.95 16 38 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 39 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.15 4.43 7.66 -2.91 -0.02 4.41 16 41 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 44 H 0.26 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.06 1.86 6.10 -2.39 -0.01 1.85 16 46 H 0.09 1.98 7.42 -2.39 -0.02 1.97 16 Total: -1.00 -83.84 368.99 4.15 -79.69 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.29 Total: 27.74 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.51 Total: 10.88 kcal Atomic # 7 Polarization: -137.58 SS G_CDS: -5.61 Total: -143.19 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.07 Total: -26.01 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -83.84 4.15 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094946988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.948 kcal (2) G-P(sol) polarization free energy of solvation -83.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds