Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37102 * 119.99669 * 2 1 4 4 H 1.08000 * 119.99655 * 150.54358 * 3 2 1 5 5 C 1.38949 * 120.00074 * 330.54061 * 3 2 1 6 6 N 1.31414 * 120.00029 * 331.97899 * 5 3 2 7 7 Si 1.86802 * 119.99755 * 151.98091 * 5 3 2 8 8 H 1.48502 * 109.46979 * 270.00027 * 7 5 3 9 9 H 1.48498 * 109.47113 * 30.00428 * 7 5 3 10 10 H 1.48503 * 109.46964 * 150.00149 * 7 5 3 11 11 C 1.34775 * 120.00225 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99765 * 180.02562 * 11 2 1 13 13 C 1.50694 * 119.99869 * 359.97438 * 11 2 1 14 14 H 1.09002 * 115.56039 * 34.25437 * 13 11 2 15 15 C 1.53139 * 117.51775 * 248.43069 * 13 11 2 16 16 C 1.52328 * 59.82790 * 252.55927 * 15 13 11 17 17 C 1.50549 * 121.92771 * 248.77706 * 16 15 13 18 18 C 1.37682 * 133.31980 * 36.25167 * 17 16 15 19 19 C 1.38367 * 119.99101 * 180.02562 * 18 17 16 20 20 C 1.38309 * 119.83050 * 0.02562 * 19 18 17 21 21 C 1.37931 * 120.35295 * 359.97438 * 20 19 18 22 22 C 1.39090 * 105.97520 * 216.28105 * 17 16 15 23 23 N 1.39615 * 110.25345 * 0.02562 * 22 17 16 24 24 C 1.46504 * 123.89475 * 180.02562 * 23 22 17 25 25 C 1.52995 * 109.47291 * 90.01897 * 24 23 22 26 26 C 1.53000 * 117.50112 * 243.62539 * 25 24 23 27 27 C 1.52996 * 117.49898 * 174.99749 * 25 24 23 28 28 C 1.34608 * 112.21762 * 359.97438 * 23 22 17 29 29 O 1.21283 * 126.62257 * 180.02562 * 28 23 22 30 30 H 1.08999 * 109.46572 * 94.88117 * 1 2 3 31 31 H 1.09001 * 109.46859 * 214.87734 * 1 2 3 32 32 H 1.08998 * 109.47539 * 334.88306 * 1 2 3 33 33 H 0.96997 * 120.00213 * 353.86399 * 6 5 3 34 34 H 1.08993 * 117.51423 * 0.02562 * 15 13 11 35 35 H 1.09002 * 117.51556 * 145.12266 * 15 13 11 36 36 H 1.08006 * 120.00614 * 0.04711 * 18 17 16 37 37 H 1.08002 * 120.08644 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.82767 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.91447 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46914 * 210.02320 * 24 23 22 41 41 H 1.08996 * 109.46643 * 330.01855 * 24 23 22 42 42 H 1.09001 * 115.54766 * 29.33423 * 25 24 23 43 43 H 1.09002 * 117.49493 * 359.97438 * 26 25 24 44 44 H 1.08995 * 117.49938 * 145.02157 * 26 25 24 45 45 H 1.08997 * 117.50318 * 214.97611 * 27 25 24 46 46 H 1.09004 * 117.49799 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1258 1.2478 0.4600 5 6 1.5904 2.3129 -0.5918 6 7 0.7395 2.1788 -1.5843 7 14 2.0471 4.0166 0.0233 8 1 1.1089 4.4218 1.1008 9 1 3.4332 3.9955 0.5558 10 1 1.9623 4.9868 -1.0977 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0001 13 6 1.3855 -2.4722 -0.0005 14 1 0.4463 -2.4730 -0.5536 15 6 1.4647 -3.3349 1.2623 16 6 2.2036 -3.7573 -0.0010 17 6 1.7893 -4.9642 -0.7999 18 6 0.5678 -5.5221 -1.1036 19 6 0.5035 -6.6653 -1.8805 20 6 1.6684 -7.2447 -2.3496 21 6 2.8941 -6.6888 -2.0475 22 6 2.9676 -5.5376 -1.2661 23 7 4.0697 -4.7995 -0.8304 24 6 5.4585 -5.1388 -1.1505 25 6 5.8671 -4.4428 -2.4502 26 6 6.2231 -5.3299 -3.6450 27 6 7.3246 -4.5773 -2.8956 28 6 3.7092 -3.7395 -0.0833 29 8 4.4519 -2.9267 0.4254 30 1 -0.3632 -0.0874 -1.0240 31 1 -0.3633 -0.8431 0.5877 32 1 -0.3634 0.9304 0.4362 33 1 0.5699 1.3020 -1.9626 34 1 2.0613 -2.9581 2.0929 35 1 0.5771 -3.9033 1.5403 36 1 -0.3402 -5.0673 -0.7357 37 1 -0.4539 -7.1040 -2.1200 38 1 1.6181 -8.1368 -2.9563 39 1 3.7992 -7.1469 -2.4179 40 1 6.1092 -4.8079 -0.3410 41 1 5.5499 -6.2182 -1.2720 42 1 5.3629 -3.4987 -2.6565 43 1 6.1666 -6.4094 -3.5048 44 1 5.9530 -4.9695 -4.6375 45 1 7.7791 -3.7220 -3.3954 46 1 7.9925 -5.1613 -2.2624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179721906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = 46.872282 kcal Electronic energy + Delta-G solvation = -30076.411674 eV Core-core repulsion = 26126.957775 eV Total energy + Delta-G solvation = -3949.453899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61725 -38.82398 -38.20192 -37.44669 -35.90365 -35.35963 -34.53959 -31.50537 -30.87275 -30.14051 -27.68546 -26.46837 -25.22079 -24.34154 -22.66609 -22.51164 -22.40181 -21.34510 -20.77642 -19.84575 -18.67663 -17.42277 -17.05997 -16.91148 -15.89247 -15.64036 -15.57290 -15.20060 -14.82862 -14.38985 -14.29511 -14.07290 -13.97689 -13.80034 -13.69410 -13.49158 -12.86364 -12.83039 -12.46599 -12.13074 -11.93264 -11.85415 -11.71230 -11.66536 -11.64004 -11.23780 -11.15562 -10.81433 -10.70691 -10.61317 -10.20156 -10.19501 -10.15822 -10.10614 -9.91829 -9.60411 -8.83392 -8.79128 -8.16669 -7.75569 -7.68258 -6.55992 -3.83787 1.17142 1.29615 2.66047 2.82133 3.32979 3.39968 3.59470 3.64682 3.67553 3.78368 4.13317 4.31273 4.38825 4.45546 4.54295 4.64355 4.77534 4.80426 4.83948 4.91270 5.00561 5.09123 5.18408 5.19645 5.22508 5.41333 5.43051 5.48170 5.48892 5.59237 5.66269 5.68229 5.75442 5.83017 5.87231 5.96702 6.05081 6.09533 6.17478 6.18870 6.35617 6.39347 6.44271 6.64385 6.68698 6.86352 7.24727 7.97997 8.18218 8.42615 8.71739 9.03382 9.48399 9.98770 10.69355 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003747 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.629620 B = 7470.332241 C = 8819.337597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.453 5.453 3 C -0.397 4.397 4 H 0.088 0.912 5 C 0.008 3.992 6 N -0.878 5.878 7 Si 1.075 2.925 8 H -0.284 1.284 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.463 3.537 12 O -0.536 6.536 13 C -0.117 4.117 14 H 0.122 0.878 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.104 4.104 18 C -0.065 4.065 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.147 4.147 22 C 0.166 3.834 23 N -0.557 5.557 24 C 0.148 3.852 25 C -0.171 4.171 26 C -0.177 4.177 27 C -0.171 4.171 28 C 0.551 3.449 29 O -0.423 6.423 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.273 0.727 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -20.426 -1.201 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.175 5.175 3 C -0.525 4.525 4 H 0.105 0.895 5 C -0.199 4.199 6 N -0.512 5.512 7 Si 0.902 3.098 8 H -0.211 1.211 9 H -0.209 1.209 10 H -0.210 1.210 11 C 0.250 3.750 12 O -0.417 6.417 13 C -0.139 4.139 14 H 0.140 0.860 15 C -0.146 4.146 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.084 4.084 19 C -0.169 4.169 20 C -0.106 4.106 21 C -0.168 4.168 22 C 0.069 3.931 23 N -0.281 5.281 24 C 0.027 3.973 25 C -0.190 4.190 26 C -0.214 4.214 27 C -0.209 4.209 28 C 0.338 3.662 29 O -0.289 6.289 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.087 -18.220 -1.040 18.282 hybrid contribution 0.130 -1.686 -0.217 1.705 sum 1.217 -19.906 -1.257 19.983 Atomic orbital electron populations 1.21633 0.82924 1.01316 0.99964 1.43513 1.04304 1.04960 1.64701 1.20356 1.06064 0.86340 1.39705 0.89467 1.26345 0.96293 1.03863 0.93420 1.70733 1.34964 1.27498 1.18051 0.83407 0.76337 0.74050 0.76027 1.21093 1.20899 1.21020 1.19285 0.87948 0.83476 0.84277 1.90762 1.12538 1.85922 1.52439 1.22348 0.99598 0.90072 1.01865 0.85985 1.22885 1.00997 1.00313 0.90455 1.20025 0.93289 0.95420 1.03836 1.19071 0.93105 0.96508 1.02007 1.20236 0.95765 0.95239 0.97153 1.20941 0.98409 0.96930 1.00622 1.20798 0.91569 0.99347 0.98866 1.20265 0.98663 0.95842 1.02019 1.18232 0.86469 0.92904 0.95530 1.45864 1.05290 1.26808 1.50111 1.21076 0.80926 0.99059 0.96276 1.22749 0.99100 1.01765 0.95361 1.23038 1.03649 0.98001 0.96726 1.22923 0.91183 1.03124 1.03639 1.19248 0.88975 0.79513 0.78482 1.90896 1.58737 1.34974 1.44317 0.94036 0.93694 0.91153 0.91560 0.87167 0.87111 0.85700 0.85619 0.85621 0.86104 0.89009 0.89992 0.87193 0.88829 0.88789 0.88517 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.85 8.20 59.85 0.49 2.34 16 2 N -0.45 -11.82 2.82 -122.19 -0.34 -12.17 16 3 C -0.40 -11.55 8.95 -14.93 -0.13 -11.68 16 4 H 0.09 2.74 7.66 -52.49 -0.40 2.34 16 5 C 0.01 0.22 4.66 -17.47 -0.08 0.14 16 6 N -0.88 -24.97 12.85 55.50 0.71 -24.26 16 7 Si 1.08 24.59 30.00 -169.99 -5.10 19.49 16 8 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 C 0.46 11.72 7.41 -10.99 -0.08 11.64 16 12 O -0.54 -15.71 12.13 -19.64 -0.24 -15.95 16 13 C -0.12 -2.22 4.71 -92.04 -0.43 -2.65 16 14 H 0.12 2.03 7.35 -51.93 -0.38 1.65 16 15 C -0.11 -1.71 9.99 -27.00 -0.27 -1.98 16 16 C -0.12 -2.15 2.42 -157.52 -0.38 -2.53 16 17 C -0.10 -1.53 6.12 -104.58 -0.64 -2.17 16 18 C -0.07 -0.77 10.03 -39.74 -0.40 -1.17 16 19 C -0.15 -1.47 10.07 -39.51 -0.40 -1.87 16 20 C -0.09 -0.84 10.02 -39.67 -0.40 -1.23 16 21 C -0.15 -1.65 9.74 -39.29 -0.38 -2.03 16 22 C 0.17 2.39 6.70 -83.59 -0.56 1.83 16 23 N -0.56 -8.99 2.74 -113.36 -0.31 -9.30 16 24 C 0.15 1.96 6.02 -4.04 -0.02 1.94 16 25 C -0.17 -2.28 6.01 -90.62 -0.54 -2.83 16 26 C -0.18 -1.81 10.18 -26.73 -0.27 -2.09 16 27 C -0.17 -1.84 10.25 -26.73 -0.27 -2.11 16 28 C 0.55 11.08 7.28 -11.02 -0.08 11.00 16 29 O -0.42 -10.31 14.14 -19.63 -0.28 -10.59 16 30 H 0.04 0.88 7.00 -51.93 -0.36 0.52 16 31 H 0.04 0.78 6.92 -51.93 -0.36 0.42 16 32 H 0.07 1.58 7.46 -51.93 -0.39 1.20 16 33 H 0.27 7.82 6.60 -40.82 -0.27 7.55 16 34 H 0.11 1.88 8.14 -51.93 -0.42 1.45 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 1.12 7.69 -52.49 -0.40 0.71 16 40 H 0.09 1.27 7.96 -51.93 -0.41 0.85 16 41 H 0.08 0.83 7.35 -51.93 -0.38 0.45 16 42 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -36.06 381.79 -11.04 -47.11 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.38 Total: 5.36 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -4.86 Total: -5.45 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.06 Total: -45.73 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.52 Total: -26.54 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.06 -11.04 -47.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.981 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds