Wall clock time and date at job start Sat Apr 11 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37102 * 119.99669 * 2 1 4 4 H 1.08000 * 119.99655 * 150.54358 * 3 2 1 5 5 C 1.38949 * 120.00074 * 330.54061 * 3 2 1 6 6 N 1.31414 * 120.00029 * 331.97899 * 5 3 2 7 7 Si 1.86802 * 119.99755 * 151.98091 * 5 3 2 8 8 H 1.48502 * 109.46979 * 270.00027 * 7 5 3 9 9 H 1.48498 * 109.47113 * 30.00428 * 7 5 3 10 10 H 1.48503 * 109.46964 * 150.00149 * 7 5 3 11 11 C 1.34775 * 120.00225 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99765 * 180.02562 * 11 2 1 13 13 C 1.50694 * 119.99869 * 359.97438 * 11 2 1 14 14 H 1.09002 * 115.56039 * 34.25437 * 13 11 2 15 15 C 1.53139 * 117.51775 * 248.43069 * 13 11 2 16 16 C 1.52328 * 59.82790 * 252.55927 * 15 13 11 17 17 C 1.50549 * 121.92771 * 248.77706 * 16 15 13 18 18 C 1.37682 * 133.31980 * 36.25167 * 17 16 15 19 19 C 1.38367 * 119.99101 * 180.02562 * 18 17 16 20 20 C 1.38309 * 119.83050 * 0.02562 * 19 18 17 21 21 C 1.37931 * 120.35295 * 359.97438 * 20 19 18 22 22 C 1.39090 * 105.97520 * 216.28105 * 17 16 15 23 23 N 1.39615 * 110.25345 * 0.02562 * 22 17 16 24 24 C 1.46504 * 123.89475 * 180.02562 * 23 22 17 25 25 C 1.52995 * 109.47291 * 90.01897 * 24 23 22 26 26 C 1.53000 * 117.50112 * 243.62539 * 25 24 23 27 27 C 1.52996 * 117.49898 * 174.99749 * 25 24 23 28 28 C 1.34608 * 112.21762 * 359.97438 * 23 22 17 29 29 O 1.21283 * 126.62257 * 180.02562 * 28 23 22 30 30 H 1.08999 * 109.46572 * 94.88117 * 1 2 3 31 31 H 1.09001 * 109.46859 * 214.87734 * 1 2 3 32 32 H 1.08998 * 109.47539 * 334.88306 * 1 2 3 33 33 H 0.96997 * 120.00213 * 353.86399 * 6 5 3 34 34 H 1.08993 * 117.51423 * 0.02562 * 15 13 11 35 35 H 1.09002 * 117.51556 * 145.12266 * 15 13 11 36 36 H 1.08006 * 120.00614 * 0.04711 * 18 17 16 37 37 H 1.08002 * 120.08644 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.82767 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.91447 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46914 * 210.02320 * 24 23 22 41 41 H 1.08996 * 109.46643 * 330.01855 * 24 23 22 42 42 H 1.09001 * 115.54766 * 29.33423 * 25 24 23 43 43 H 1.09002 * 117.49493 * 359.97438 * 26 25 24 44 44 H 1.08995 * 117.49938 * 145.02157 * 26 25 24 45 45 H 1.08997 * 117.50318 * 214.97611 * 27 25 24 46 46 H 1.09004 * 117.49799 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1258 1.2478 0.4600 5 6 1.5904 2.3129 -0.5918 6 7 0.7395 2.1788 -1.5843 7 14 2.0471 4.0166 0.0233 8 1 1.1089 4.4218 1.1008 9 1 3.4332 3.9955 0.5558 10 1 1.9623 4.9868 -1.0977 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0001 13 6 1.3855 -2.4722 -0.0005 14 1 0.4463 -2.4730 -0.5536 15 6 1.4647 -3.3349 1.2623 16 6 2.2036 -3.7573 -0.0010 17 6 1.7893 -4.9642 -0.7999 18 6 0.5678 -5.5221 -1.1036 19 6 0.5035 -6.6653 -1.8805 20 6 1.6684 -7.2447 -2.3496 21 6 2.8941 -6.6888 -2.0475 22 6 2.9676 -5.5376 -1.2661 23 7 4.0697 -4.7995 -0.8304 24 6 5.4585 -5.1388 -1.1505 25 6 5.8671 -4.4428 -2.4502 26 6 6.2231 -5.3299 -3.6450 27 6 7.3246 -4.5773 -2.8956 28 6 3.7092 -3.7395 -0.0833 29 8 4.4519 -2.9267 0.4254 30 1 -0.3632 -0.0874 -1.0240 31 1 -0.3633 -0.8431 0.5877 32 1 -0.3634 0.9304 0.4362 33 1 0.5699 1.3020 -1.9626 34 1 2.0613 -2.9581 2.0929 35 1 0.5771 -3.9033 1.5403 36 1 -0.3402 -5.0673 -0.7357 37 1 -0.4539 -7.1040 -2.1200 38 1 1.6181 -8.1368 -2.9563 39 1 3.7992 -7.1469 -2.4179 40 1 6.1092 -4.8079 -0.3410 41 1 5.5499 -6.2182 -1.2720 42 1 5.3629 -3.4987 -2.6565 43 1 6.1666 -6.4094 -3.5048 44 1 5.9530 -4.9695 -4.6375 45 1 7.7791 -3.7220 -3.3954 46 1 7.9925 -5.1613 -2.2624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179721906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:09 Heat of formation + Delta-G solvation = 26.551774 kcal Electronic energy + Delta-G solvation = -30077.292837 eV Core-core repulsion = 26126.957775 eV Total energy + Delta-G solvation = -3950.335062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.83435 -40.54413 -39.34075 -38.66224 -37.42001 -36.69454 -36.36532 -33.57129 -31.90458 -31.07342 -28.75297 -28.39782 -26.94244 -25.64384 -24.41467 -23.37518 -23.35606 -22.39499 -21.90751 -21.25807 -20.22422 -19.27808 -18.46733 -18.17803 -17.38644 -16.87431 -16.78233 -16.69092 -16.29303 -16.06353 -15.62638 -15.46820 -15.13883 -15.09766 -14.92778 -14.79491 -14.17232 -13.90136 -13.85796 -13.72255 -13.57942 -13.24975 -13.11403 -12.98477 -12.89126 -12.62091 -12.47325 -12.15933 -12.01141 -11.96862 -11.93812 -11.68299 -11.51955 -11.19879 -11.13062 -11.05803 -10.86760 -10.12436 -9.82004 -9.68134 -8.82697 -8.79122 -6.09020 0.17356 0.43622 1.32204 1.48628 1.51938 1.68990 1.78713 1.90843 2.34899 2.73053 2.74098 2.74874 2.94021 3.06277 3.22056 3.33499 3.45245 3.61430 3.75212 3.81717 3.86271 3.95238 4.05661 4.11976 4.19375 4.29761 4.37416 4.40426 4.47558 4.52658 4.56170 4.62291 4.64709 4.65909 4.75188 4.80430 4.87868 4.88463 5.00731 5.08037 5.13936 5.20376 5.52192 5.62744 5.75648 5.77086 5.83287 5.88883 6.19588 6.61874 6.89346 7.06974 7.38627 7.96611 8.44837 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003747 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.629620 B = 7470.332241 C = 8819.337597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.473 5.473 3 C -0.429 4.429 4 H 0.045 0.955 5 C -0.021 4.021 6 N -0.885 5.885 7 Si 1.123 2.877 8 H -0.258 1.258 9 H -0.286 1.286 10 H -0.276 1.276 11 C 0.450 3.550 12 O -0.588 6.588 13 C -0.130 4.130 14 H 0.152 0.848 15 C -0.081 4.081 16 C -0.127 4.127 17 C -0.123 4.123 18 C -0.068 4.068 19 C -0.138 4.138 20 C -0.079 4.079 21 C -0.141 4.141 22 C 0.130 3.870 23 N -0.556 5.556 24 C 0.148 3.852 25 C -0.201 4.201 26 C -0.147 4.147 27 C -0.166 4.166 28 C 0.531 3.469 29 O -0.492 6.492 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.055 0.945 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -24.332 -2.366 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.194 5.194 3 C -0.556 4.556 4 H 0.063 0.937 5 C -0.224 4.224 6 N -0.520 5.520 7 Si 0.943 3.057 8 H -0.182 1.182 9 H -0.212 1.212 10 H -0.201 1.201 11 C 0.239 3.761 12 O -0.471 6.471 13 C -0.152 4.152 14 H 0.170 0.830 15 C -0.118 4.118 16 C -0.131 4.131 17 C -0.126 4.126 18 C -0.086 4.086 19 C -0.157 4.157 20 C -0.098 4.098 21 C -0.162 4.162 22 C 0.035 3.965 23 N -0.279 5.279 24 C 0.027 3.973 25 C -0.221 4.221 26 C -0.184 4.184 27 C -0.204 4.204 28 C 0.319 3.681 29 O -0.364 6.364 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.161 0.839 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.590 -22.198 -2.241 22.368 hybrid contribution 0.961 -0.630 0.045 1.150 sum -0.629 -22.828 -2.196 22.942 Atomic orbital electron populations 1.21698 0.80087 1.02544 1.00699 1.43778 1.06135 1.04468 1.65011 1.20227 1.05644 0.88764 1.40983 0.93668 1.27699 0.95356 1.06817 0.92562 1.70843 1.35694 1.26861 1.18564 0.82831 0.76479 0.69974 0.76453 1.18221 1.21223 1.20136 1.20400 0.87919 0.85511 0.82257 1.90754 1.15217 1.87155 1.53991 1.22124 1.00283 0.87206 1.05542 0.83037 1.23059 1.01942 0.98287 0.88530 1.20124 0.91898 0.95760 1.05349 1.19079 0.94710 0.95724 1.03058 1.20576 0.95143 0.95780 0.97149 1.21430 1.00156 0.95561 0.98529 1.21314 0.90569 0.99945 0.97939 1.20634 1.00641 0.94369 1.00573 1.18626 0.85533 0.94581 0.97763 1.45826 1.06935 1.25945 1.49160 1.21229 0.79551 1.01079 0.95417 1.22519 1.01204 1.00900 0.97462 1.23157 1.01034 0.99124 0.95095 1.23048 0.90297 1.03405 1.03611 1.19867 0.90242 0.79625 0.78353 1.90837 1.60427 1.37676 1.47465 0.93957 0.89168 0.92518 0.92624 0.89456 0.81717 0.83529 0.82109 0.81810 0.83930 0.91001 0.86009 0.92606 0.85578 0.88734 0.89179 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.02 8.20 127.77 1.05 5.07 16 2 N -0.47 -25.89 2.82 -658.89 -1.86 -27.75 16 3 C -0.43 -26.51 8.95 84.04 0.75 -25.76 16 4 H 0.05 3.11 7.66 -2.91 -0.02 3.09 16 5 C -0.02 -1.21 4.66 84.93 0.40 -0.81 16 6 N -0.89 -51.42 12.85 21.66 0.28 -51.15 16 7 Si 1.12 50.80 30.00 68.60 2.06 52.85 16 8 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 9 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.45 24.25 7.41 87.66 0.65 24.90 16 12 O -0.59 -37.80 12.13 21.01 0.25 -37.55 16 13 C -0.13 -4.99 4.71 -11.71 -0.06 -5.04 16 14 H 0.15 4.79 7.35 -2.39 -0.02 4.77 16 15 C -0.08 -2.49 9.99 30.42 0.30 -2.19 16 16 C -0.13 -4.58 2.42 -54.13 -0.13 -4.71 16 17 C -0.12 -3.41 6.12 -19.84 -0.12 -3.53 16 18 C -0.07 -1.32 10.03 22.17 0.22 -1.10 16 19 C -0.14 -1.93 10.07 22.32 0.22 -1.71 16 20 C -0.08 -1.08 10.02 22.21 0.22 -0.85 16 21 C -0.14 -2.65 9.74 22.46 0.22 -2.43 16 22 C 0.13 3.59 6.70 38.37 0.26 3.85 16 23 N -0.56 -18.76 2.74 -631.05 -1.73 -20.49 16 24 C 0.15 4.09 6.02 86.38 0.52 4.61 16 25 C -0.20 -5.71 6.01 -10.80 -0.06 -5.78 16 26 C -0.15 -2.78 10.18 30.60 0.31 -2.47 16 27 C -0.17 -3.58 10.25 30.60 0.31 -3.26 16 28 C 0.53 23.11 7.28 87.71 0.64 23.75 16 29 O -0.49 -26.81 14.14 21.04 0.30 -26.52 16 30 H 0.04 1.80 7.00 -2.39 -0.02 1.78 16 31 H 0.09 3.01 6.92 -2.39 -0.02 3.00 16 32 H 0.06 2.57 7.46 -2.39 -0.02 2.55 16 33 H 0.26 15.52 6.60 -92.71 -0.61 14.90 16 34 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.17 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.14 1.97 7.69 -2.91 -0.02 1.94 16 40 H 0.07 2.20 7.96 -2.39 -0.02 2.18 16 41 H 0.12 2.26 7.35 -2.39 -0.02 2.24 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 43 H 0.13 1.58 8.03 -2.39 -0.02 1.56 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 45 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -91.18 381.79 6.16 -85.02 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.15 Total: 23.05 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.71 Total: 2.53 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -3.31 Total: -99.39 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: 0.55 Total: -64.06 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.06 Total: 52.85 kcal Total: -91.18 6.16 -85.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.570 kcal (2) G-P(sol) polarization free energy of solvation -91.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds