Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37101 * 119.99819 * 2 1 4 4 H 1.07998 * 119.99433 * 159.68513 * 3 2 1 5 5 C 1.38945 * 119.99735 * 339.67588 * 3 2 1 6 6 N 1.31414 * 120.00549 * 344.27064 * 5 3 2 7 7 Si 1.86803 * 119.99548 * 164.26228 * 5 3 2 8 8 H 1.48500 * 109.47179 * 265.42279 * 7 5 3 9 9 H 1.48496 * 109.47258 * 25.42605 * 7 5 3 10 10 H 1.48499 * 109.46941 * 145.42624 * 7 5 3 11 11 C 1.34778 * 120.00023 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99836 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99776 * 359.97438 * 11 2 1 14 14 H 1.08994 * 115.56750 * 325.64713 * 13 11 2 15 15 C 1.53141 * 117.51142 * 111.39458 * 13 11 2 16 16 C 1.52341 * 59.82783 * 107.43543 * 15 13 11 17 17 C 1.50548 * 121.92227 * 111.22200 * 16 15 13 18 18 C 1.37687 * 133.32447 * 323.72295 * 17 16 15 19 19 C 1.38367 * 119.98770 * 179.97438 * 18 17 16 20 20 C 1.38303 * 119.83555 * 0.02562 * 19 18 17 21 21 C 1.37931 * 120.34490 * 359.97438 * 20 19 18 22 22 C 1.39085 * 105.97350 * 143.71814 * 17 16 15 23 23 N 1.39619 * 110.25257 * 359.97438 * 22 17 16 24 24 C 1.46491 * 123.89104 * 179.97438 * 23 22 17 25 25 C 1.53007 * 109.47116 * 270.02412 * 24 23 22 26 26 C 1.52997 * 117.49804 * 243.62275 * 25 24 23 27 27 C 1.52999 * 117.50028 * 174.99882 * 25 24 23 28 28 C 1.34604 * 112.21561 * 0.02562 * 23 22 17 29 29 O 1.21281 * 126.61858 * 179.97438 * 28 23 22 30 30 H 1.08994 * 109.47537 * 85.65496 * 1 2 3 31 31 H 1.09008 * 109.46902 * 205.65655 * 1 2 3 32 32 H 1.09004 * 109.47196 * 325.65459 * 1 2 3 33 33 H 0.96998 * 120.00049 * 180.02562 * 6 5 3 34 34 H 1.09002 * 117.51558 * 214.87957 * 15 13 11 35 35 H 1.08998 * 117.51715 * 359.97438 * 15 13 11 36 36 H 1.08006 * 120.00371 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.08118 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.82589 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.90368 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47854 * 30.02448 * 24 23 22 41 41 H 1.09001 * 109.47644 * 150.02791 * 24 23 22 42 42 H 1.08999 * 115.54964 * 29.33126 * 25 24 23 43 43 H 1.08999 * 117.49951 * 0.02562 * 26 25 24 44 44 H 1.09004 * 117.49763 * 145.02050 * 26 25 24 45 45 H 1.08993 * 117.50334 * 214.98100 * 27 25 24 46 46 H 1.09000 * 117.50102 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1801 1.2164 0.3247 5 6 1.5205 2.3531 -0.4180 6 7 0.3963 2.2861 -1.0952 7 14 2.2717 4.0158 -0.0170 8 1 1.6646 4.5454 1.2306 9 1 3.7369 3.8647 0.1709 10 1 2.0105 4.9592 -1.1337 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0017 14 1 0.4474 -2.4734 0.5569 15 6 1.4602 -3.3335 -1.2624 16 6 2.2036 -3.7573 -0.0020 17 6 1.7920 -4.9652 0.7968 18 6 0.5714 -5.5233 1.1043 19 6 0.5099 -6.6675 1.8800 20 6 1.6764 -7.2472 2.3448 21 6 2.9010 -6.6910 2.0388 22 6 2.9718 -5.5391 1.2583 23 7 4.0724 -4.8005 0.8197 24 6 5.4622 -5.1402 1.1347 25 6 5.8748 -4.4466 2.4346 26 6 6.9942 -3.4067 2.3558 27 6 7.2598 -4.7694 2.9988 28 6 3.7093 -3.7396 0.0751 29 8 4.4502 -2.9262 -0.4351 30 1 -0.3634 0.0779 -1.0246 31 1 -0.3633 -0.9264 0.4450 32 1 -0.3634 0.8485 0.5798 33 1 -0.0432 3.1000 -1.3872 34 1 0.5717 -3.9015 -1.5381 35 1 2.0541 -2.9557 -2.0947 36 1 -0.3378 -5.0681 0.7402 37 1 -0.4466 -7.1068 2.1218 38 1 1.6283 -8.1405 2.9498 39 1 3.8074 -7.1494 2.4059 40 1 5.5544 -6.2197 1.2538 41 1 6.1103 -4.8075 0.3239 42 1 5.0701 -4.2673 3.1477 43 1 7.4365 -3.2164 1.3779 44 1 6.9262 -2.5429 3.0172 45 1 7.3665 -4.8022 4.0830 46 1 7.8773 -5.4756 2.4437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179721912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = 53.529282 kcal Electronic energy + Delta-G solvation = -30044.541369 eV Core-core repulsion = 26095.376140 eV Total energy + Delta-G solvation = -3949.165230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54677 -38.69649 -38.15677 -37.31277 -35.75520 -35.29666 -34.33586 -31.54058 -30.86071 -30.06195 -27.67435 -26.47839 -25.10379 -24.30209 -22.78222 -22.49993 -22.27361 -21.33218 -20.58266 -19.83757 -18.44645 -17.14660 -16.91788 -16.70189 -15.92897 -15.58257 -15.49538 -15.21665 -14.56136 -14.39139 -14.10550 -14.09593 -14.01155 -13.95521 -13.44778 -13.34798 -12.78455 -12.71482 -12.35982 -12.04451 -11.86729 -11.79662 -11.62486 -11.53585 -11.29930 -11.19059 -11.12432 -10.90157 -10.62881 -10.53577 -10.29461 -10.17546 -10.14824 -10.05801 -10.02848 -9.50101 -8.96959 -8.74900 -8.09589 -7.66951 -7.58858 -6.25350 -3.77303 1.21822 1.33095 2.73903 2.87790 3.19933 3.28995 3.35515 3.72660 3.77201 3.82583 4.13102 4.38334 4.40342 4.53212 4.64782 4.66000 4.85826 4.88456 4.95867 4.96909 5.10507 5.22526 5.22675 5.24515 5.34710 5.42140 5.47236 5.51629 5.59987 5.62968 5.71288 5.76403 5.90364 5.94091 5.96573 6.07375 6.14549 6.21536 6.29615 6.38795 6.42358 6.48347 6.72723 6.91634 6.92368 7.27075 7.30412 7.64038 8.19530 8.48622 8.60361 9.29310 9.51046 10.10989 10.78359 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003843 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.813181 B = 7284.963041 C = 9005.037733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.445 5.445 3 C -0.300 4.300 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.882 5.882 7 Si 0.923 3.077 8 H -0.279 1.279 9 H -0.269 1.269 10 H -0.284 1.284 11 C 0.459 3.541 12 O -0.547 6.547 13 C -0.113 4.113 14 H 0.124 0.876 15 C -0.105 4.105 16 C -0.127 4.127 17 C -0.102 4.102 18 C -0.066 4.066 19 C -0.150 4.150 20 C -0.088 4.088 21 C -0.149 4.149 22 C 0.163 3.837 23 N -0.558 5.558 24 C 0.148 3.852 25 C -0.173 4.173 26 C -0.166 4.166 27 C -0.176 4.176 28 C 0.552 3.448 29 O -0.421 6.421 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.266 0.734 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 -19.551 6.286 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.164 5.164 3 C -0.428 4.428 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.750 3.250 8 H -0.205 1.205 9 H -0.194 1.194 10 H -0.210 1.210 11 C 0.245 3.755 12 O -0.428 6.428 13 C -0.135 4.135 14 H 0.141 0.859 15 C -0.143 4.143 16 C -0.131 4.131 17 C -0.105 4.105 18 C -0.085 4.085 19 C -0.170 4.170 20 C -0.107 4.107 21 C -0.171 4.171 22 C 0.066 3.934 23 N -0.282 5.282 24 C 0.026 3.974 25 C -0.192 4.192 26 C -0.203 4.203 27 C -0.214 4.214 28 C 0.339 3.661 29 O -0.287 6.287 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.843 -18.809 5.842 19.782 hybrid contribution 0.013 0.888 0.355 0.956 sum 1.857 -17.922 6.196 19.053 Atomic orbital electron populations 1.21514 0.81368 0.98211 1.02028 1.43526 1.05351 1.04458 1.63097 1.19667 0.98514 0.83186 1.41399 0.88328 1.25277 0.96661 0.99849 0.95553 1.70024 1.18497 1.28845 1.34802 0.85949 0.79639 0.81484 0.77899 1.20518 1.19371 1.21003 1.19123 0.87849 0.83504 0.84978 1.90753 1.12485 1.85979 1.53625 1.22302 0.99438 0.89862 1.01907 0.85861 1.22855 1.00826 1.00105 0.90500 1.20066 0.93284 0.95590 1.04132 1.19099 0.93024 0.96518 1.01840 1.20249 0.95861 0.95228 0.97114 1.20938 0.98362 0.96950 1.00705 1.20788 0.91590 0.99340 0.98969 1.20277 0.98702 0.95881 1.02204 1.18247 0.86591 0.92919 0.95614 1.45882 1.05149 1.26775 1.50360 1.21075 0.81040 0.99304 0.95968 1.22688 0.92808 1.04345 0.99372 1.23008 1.01766 0.92763 1.02800 1.22946 0.98110 0.99793 1.00509 1.19232 0.88973 0.79464 0.78448 1.90890 1.58857 1.34887 1.44051 0.92145 0.95496 0.91844 0.92404 0.87165 0.87146 0.85654 0.85677 0.85683 0.86051 0.89817 0.89352 0.87619 0.88378 0.88721 0.88771 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.59 59.85 0.51 3.06 16 2 N -0.44 -11.71 3.02 -122.19 -0.37 -12.08 16 3 C -0.30 -8.62 9.31 -14.93 -0.14 -8.76 16 4 H 0.10 3.01 7.39 -52.49 -0.39 2.62 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -23.91 10.72 55.50 0.59 -23.32 16 7 Si 0.92 21.36 29.58 -169.99 -5.03 16.33 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.46 11.62 7.41 -10.98 -0.08 11.53 16 12 O -0.55 -15.83 12.04 -19.63 -0.24 -16.06 16 13 C -0.11 -2.17 5.15 -92.03 -0.47 -2.65 16 14 H 0.12 2.05 6.40 -51.93 -0.33 1.71 16 15 C -0.10 -1.73 9.99 -26.99 -0.27 -2.00 16 16 C -0.13 -2.25 2.42 -157.52 -0.38 -2.63 16 17 C -0.10 -1.49 6.12 -104.58 -0.64 -2.13 16 18 C -0.07 -0.77 10.03 -39.73 -0.40 -1.17 16 19 C -0.15 -1.47 10.06 -39.51 -0.40 -1.87 16 20 C -0.09 -0.84 10.02 -39.67 -0.40 -1.24 16 21 C -0.15 -1.66 9.73 -39.29 -0.38 -2.04 16 22 C 0.16 2.33 6.70 -83.60 -0.56 1.77 16 23 N -0.56 -8.95 2.74 -113.37 -0.31 -9.26 16 24 C 0.15 1.94 6.02 -4.04 -0.02 1.91 16 25 C -0.17 -2.25 6.01 -90.62 -0.54 -2.79 16 26 C -0.17 -2.21 10.18 -26.73 -0.27 -2.48 16 27 C -0.18 -1.79 10.25 -26.73 -0.27 -2.06 16 28 C 0.55 11.09 7.28 -11.03 -0.08 11.01 16 29 O -0.42 -10.24 14.15 -19.62 -0.28 -10.52 16 30 H 0.06 1.42 7.45 -51.93 -0.39 1.03 16 31 H 0.03 0.49 5.82 -51.92 -0.30 0.19 16 32 H 0.06 1.50 7.18 -51.93 -0.37 1.12 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.12 1.11 7.70 -52.48 -0.40 0.70 16 40 H 0.08 0.84 7.61 -51.93 -0.40 0.45 16 41 H 0.09 1.22 7.70 -51.93 -0.40 0.82 16 42 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.10 1.35 8.03 -51.93 -0.42 0.94 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -34.67 380.50 -11.12 -45.79 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.34 Total: 5.21 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -4.89 Total: -1.83 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.09 Total: -44.66 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.51 Total: -26.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.67 -11.12 -45.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.324 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds