Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37101 * 119.99819 * 2 1 4 4 H 1.07998 * 119.99433 * 159.68513 * 3 2 1 5 5 C 1.38945 * 119.99735 * 339.67588 * 3 2 1 6 6 N 1.31414 * 120.00549 * 344.27064 * 5 3 2 7 7 Si 1.86803 * 119.99548 * 164.26228 * 5 3 2 8 8 H 1.48500 * 109.47179 * 265.42279 * 7 5 3 9 9 H 1.48496 * 109.47258 * 25.42605 * 7 5 3 10 10 H 1.48499 * 109.46941 * 145.42624 * 7 5 3 11 11 C 1.34778 * 120.00023 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99836 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99776 * 359.97438 * 11 2 1 14 14 H 1.08994 * 115.56750 * 325.64713 * 13 11 2 15 15 C 1.53141 * 117.51142 * 111.39458 * 13 11 2 16 16 C 1.52341 * 59.82783 * 107.43543 * 15 13 11 17 17 C 1.50548 * 121.92227 * 111.22200 * 16 15 13 18 18 C 1.37687 * 133.32447 * 323.72295 * 17 16 15 19 19 C 1.38367 * 119.98770 * 179.97438 * 18 17 16 20 20 C 1.38303 * 119.83555 * 0.02562 * 19 18 17 21 21 C 1.37931 * 120.34490 * 359.97438 * 20 19 18 22 22 C 1.39085 * 105.97350 * 143.71814 * 17 16 15 23 23 N 1.39619 * 110.25257 * 359.97438 * 22 17 16 24 24 C 1.46491 * 123.89104 * 179.97438 * 23 22 17 25 25 C 1.53007 * 109.47116 * 270.02412 * 24 23 22 26 26 C 1.52997 * 117.49804 * 243.62275 * 25 24 23 27 27 C 1.52999 * 117.50028 * 174.99882 * 25 24 23 28 28 C 1.34604 * 112.21561 * 0.02562 * 23 22 17 29 29 O 1.21281 * 126.61858 * 179.97438 * 28 23 22 30 30 H 1.08994 * 109.47537 * 85.65496 * 1 2 3 31 31 H 1.09008 * 109.46902 * 205.65655 * 1 2 3 32 32 H 1.09004 * 109.47196 * 325.65459 * 1 2 3 33 33 H 0.96998 * 120.00049 * 180.02562 * 6 5 3 34 34 H 1.09002 * 117.51558 * 214.87957 * 15 13 11 35 35 H 1.08998 * 117.51715 * 359.97438 * 15 13 11 36 36 H 1.08006 * 120.00371 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.08118 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.82589 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.90368 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47854 * 30.02448 * 24 23 22 41 41 H 1.09001 * 109.47644 * 150.02791 * 24 23 22 42 42 H 1.08999 * 115.54964 * 29.33126 * 25 24 23 43 43 H 1.08999 * 117.49951 * 0.02562 * 26 25 24 44 44 H 1.09004 * 117.49763 * 145.02050 * 26 25 24 45 45 H 1.08993 * 117.50334 * 214.98100 * 27 25 24 46 46 H 1.09000 * 117.50102 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1801 1.2164 0.3247 5 6 1.5205 2.3531 -0.4180 6 7 0.3963 2.2861 -1.0952 7 14 2.2717 4.0158 -0.0170 8 1 1.6646 4.5454 1.2306 9 1 3.7369 3.8647 0.1709 10 1 2.0105 4.9592 -1.1337 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0017 14 1 0.4474 -2.4734 0.5569 15 6 1.4602 -3.3335 -1.2624 16 6 2.2036 -3.7573 -0.0020 17 6 1.7920 -4.9652 0.7968 18 6 0.5714 -5.5233 1.1043 19 6 0.5099 -6.6675 1.8800 20 6 1.6764 -7.2472 2.3448 21 6 2.9010 -6.6910 2.0388 22 6 2.9718 -5.5391 1.2583 23 7 4.0724 -4.8005 0.8197 24 6 5.4622 -5.1402 1.1347 25 6 5.8748 -4.4466 2.4346 26 6 6.9942 -3.4067 2.3558 27 6 7.2598 -4.7694 2.9988 28 6 3.7093 -3.7396 0.0751 29 8 4.4502 -2.9262 -0.4351 30 1 -0.3634 0.0779 -1.0246 31 1 -0.3633 -0.9264 0.4450 32 1 -0.3634 0.8485 0.5798 33 1 -0.0432 3.1000 -1.3872 34 1 0.5717 -3.9015 -1.5381 35 1 2.0541 -2.9557 -2.0947 36 1 -0.3378 -5.0681 0.7402 37 1 -0.4466 -7.1068 2.1218 38 1 1.6283 -8.1405 2.9498 39 1 3.8074 -7.1494 2.4059 40 1 5.5544 -6.2197 1.2538 41 1 6.1103 -4.8075 0.3239 42 1 5.0701 -4.2673 3.1477 43 1 7.4365 -3.2164 1.3779 44 1 6.9262 -2.5429 3.0172 45 1 7.3665 -4.8022 4.0830 46 1 7.8773 -5.4756 2.4437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179721912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = 34.753268 kcal Electronic energy + Delta-G solvation = -30045.355558 eV Core-core repulsion = 26095.376140 eV Total energy + Delta-G solvation = -3949.979419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.76347 -40.39602 -39.29118 -38.56998 -37.26187 -36.56591 -36.24673 -33.60403 -31.88370 -30.99766 -28.75118 -28.42753 -26.88292 -25.59942 -24.48086 -23.48415 -23.21158 -22.37871 -21.70158 -21.18226 -19.98768 -18.85807 -18.49000 -18.03943 -17.48252 -16.83502 -16.68973 -16.56666 -16.18482 -15.91319 -15.80770 -15.19058 -15.11593 -15.04070 -14.94051 -14.82436 -14.07607 -13.83853 -13.71369 -13.58999 -13.35034 -13.13581 -13.05464 -12.96212 -12.83871 -12.67064 -12.48945 -12.40023 -12.17212 -12.08542 -11.79097 -11.62665 -11.45948 -11.21662 -11.10972 -11.01697 -10.89444 -10.02328 -9.67041 -9.62683 -8.77474 -8.33892 -5.95281 0.22779 0.47678 1.30707 1.36202 1.44750 1.49173 1.74084 1.97987 2.24891 2.75422 2.78223 2.89155 2.99474 3.18791 3.32539 3.40924 3.55279 3.62298 3.80484 3.85431 3.95025 4.05301 4.10170 4.16116 4.24290 4.30485 4.41327 4.48377 4.57764 4.58877 4.65286 4.68098 4.72046 4.79843 4.88514 4.90139 5.03158 5.06955 5.12017 5.15553 5.24875 5.39729 5.44001 5.56602 5.66887 5.81042 5.88302 6.07806 6.24303 6.50778 7.09122 7.23644 7.49241 8.11639 8.67713 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003843 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.813181 B = 7284.963041 C = 9005.037733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.462 5.462 3 C -0.342 4.342 4 H 0.061 0.939 5 C 0.000 4.000 6 N -0.892 5.892 7 Si 0.985 3.015 8 H -0.262 1.262 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.445 3.555 12 O -0.594 6.594 13 C -0.125 4.125 14 H 0.156 0.844 15 C -0.086 4.086 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.068 4.068 19 C -0.138 4.138 20 C -0.080 4.080 21 C -0.143 4.143 22 C 0.130 3.870 23 N -0.557 5.557 24 C 0.145 3.855 25 C -0.184 4.184 26 C -0.200 4.200 27 C -0.130 4.130 28 C 0.533 3.467 29 O -0.489 6.489 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.274 0.726 34 H 0.161 0.839 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -23.157 8.112 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.182 5.182 3 C -0.470 4.470 4 H 0.079 0.921 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.809 3.191 8 H -0.187 1.187 9 H -0.208 1.208 10 H -0.195 1.195 11 C 0.234 3.766 12 O -0.478 6.478 13 C -0.147 4.147 14 H 0.173 0.827 15 C -0.124 4.124 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.086 4.086 19 C -0.157 4.157 20 C -0.098 4.098 21 C -0.164 4.164 22 C 0.035 3.965 23 N -0.280 5.280 24 C 0.024 3.976 25 C -0.203 4.203 26 C -0.238 4.238 27 C -0.167 4.167 28 C 0.321 3.679 29 O -0.360 6.360 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.132 0.868 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.666 -22.476 7.696 23.767 hybrid contribution 0.758 1.876 -0.171 2.031 sum 0.092 -20.600 7.525 21.932 Atomic orbital electron populations 1.21468 0.79194 0.99886 1.01407 1.43791 1.06788 1.04210 1.63450 1.19504 0.97887 0.85516 1.44074 0.92061 1.25976 0.97075 1.02430 0.94677 1.70081 1.18811 1.30070 1.34151 0.85056 0.78039 0.77395 0.78632 1.18719 1.20776 1.19499 1.20197 0.87864 0.85358 0.83215 1.90743 1.14949 1.87104 1.55034 1.22113 1.00271 0.87223 1.05044 0.82683 1.22998 1.01864 0.98726 0.88803 1.20131 0.92019 0.95936 1.05054 1.19078 0.94651 0.95702 1.02900 1.20580 0.95233 0.95761 0.97070 1.21417 1.00093 0.95558 0.98598 1.21297 0.90605 0.99919 0.98011 1.20633 1.00631 0.94402 1.00739 1.18611 0.85613 0.94537 0.97772 1.45828 1.06781 1.25891 1.49457 1.21263 0.79673 1.01360 0.95301 1.22636 0.93519 1.04764 0.99390 1.22993 1.03878 0.94330 1.02561 1.23057 0.95245 0.96749 1.01621 1.19807 0.90124 0.79611 0.78317 1.90837 1.60481 1.37581 1.47079 0.93306 0.90953 0.93379 0.91670 0.82099 0.89993 0.83566 0.82178 0.81932 0.83981 0.85979 0.91174 0.89107 0.89958 0.90112 0.86801 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.62 8.59 127.77 1.10 6.72 16 2 N -0.46 -25.59 3.02 -658.89 -1.99 -27.58 16 3 C -0.34 -20.92 9.31 84.04 0.78 -20.13 16 4 H 0.06 4.11 7.39 -2.91 -0.02 4.08 16 5 C 0.00 0.02 5.04 84.92 0.43 0.44 16 6 N -0.89 -49.04 10.72 21.66 0.23 -48.81 16 7 Si 0.99 45.01 29.58 68.60 2.03 47.04 16 8 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 9 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 C 0.44 23.93 7.41 87.66 0.65 24.58 16 12 O -0.59 -37.59 12.04 21.02 0.25 -37.34 16 13 C -0.13 -4.86 5.15 -11.71 -0.06 -4.92 16 14 H 0.16 4.85 6.40 -2.39 -0.02 4.83 16 15 C -0.09 -2.83 9.99 30.42 0.30 -2.53 16 16 C -0.13 -4.59 2.42 -54.13 -0.13 -4.72 16 17 C -0.12 -3.31 6.12 -19.84 -0.12 -3.43 16 18 C -0.07 -1.30 10.03 22.17 0.22 -1.08 16 19 C -0.14 -1.90 10.06 22.32 0.22 -1.67 16 20 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 21 C -0.14 -2.64 9.73 22.46 0.22 -2.43 16 22 C 0.13 3.52 6.70 38.36 0.26 3.78 16 23 N -0.56 -18.40 2.74 -631.09 -1.73 -20.13 16 24 C 0.14 3.89 6.02 86.38 0.52 4.41 16 25 C -0.18 -4.92 6.01 -10.79 -0.06 -4.99 16 26 C -0.20 -5.79 10.18 30.59 0.31 -5.48 16 27 C -0.13 -2.47 10.25 30.59 0.31 -2.15 16 28 C 0.53 22.96 7.28 87.71 0.64 23.60 16 29 O -0.49 -26.34 14.15 21.04 0.30 -26.05 16 30 H 0.05 2.31 7.45 -2.39 -0.02 2.29 16 31 H 0.07 2.56 5.82 -2.38 -0.01 2.55 16 32 H 0.05 2.29 7.18 -2.38 -0.02 2.27 16 33 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.14 1.97 7.70 -2.91 -0.02 1.95 16 40 H 0.12 2.24 7.61 -2.39 -0.02 2.22 16 41 H 0.07 2.11 7.70 -2.39 -0.02 2.09 16 42 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.08 2.58 8.03 -2.39 -0.02 2.56 16 44 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -86.33 380.50 5.91 -80.42 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.00 Total: 23.30 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.81 Total: 9.15 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -3.49 Total: -96.52 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: 0.55 Total: -63.38 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -86.33 5.91 -80.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.173 kcal (2) G-P(sol) polarization free energy of solvation -86.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds