Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37099 * 119.99734 * 2 1 4 4 H 1.08003 * 119.99842 * 201.94550 * 3 2 1 5 5 C 1.38944 * 120.00417 * 21.94763 * 3 2 1 6 6 N 1.31419 * 119.99845 * 15.04796 * 5 3 2 7 7 Si 1.86799 * 120.00403 * 195.04981 * 5 3 2 8 8 H 1.48491 * 109.47298 * 59.99723 * 7 5 3 9 9 H 1.48499 * 109.47207 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46970 * 299.99561 * 7 5 3 11 11 C 1.34777 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00258 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00110 * 0.02562 * 11 2 1 14 14 H 1.09005 * 115.55447 * 300.99983 * 13 11 2 15 15 C 1.53134 * 117.55744 * 155.19371 * 13 11 2 16 16 C 1.52334 * 117.52001 * 86.74698 * 13 11 2 17 17 C 1.50553 * 121.91952 * 356.25983 * 16 13 11 18 18 C 1.37684 * 133.31602 * 36.30853 * 17 16 13 19 19 C 1.38366 * 119.98601 * 179.97438 * 18 17 16 20 20 C 1.38304 * 119.83075 * 0.02562 * 19 18 17 21 21 C 1.37931 * 120.35167 * 0.02562 * 20 19 18 22 22 C 1.39091 * 105.97629 * 216.50945 * 17 16 13 23 23 N 1.39620 * 110.24708 * 359.63459 * 22 17 16 24 24 C 1.46504 * 123.88806 * 180.16130 * 23 22 17 25 25 C 1.52999 * 109.46874 * 270.26644 * 24 23 22 26 26 C 1.53000 * 117.49794 * 243.74558 * 25 24 23 27 27 C 1.53000 * 117.49638 * 175.08769 * 25 24 23 28 28 C 1.34602 * 112.21955 * 0.40537 * 23 22 17 29 29 O 1.21288 * 126.61983 * 179.79110 * 28 23 22 30 30 H 1.09008 * 109.47069 * 270.69593 * 1 2 3 31 31 H 1.08997 * 109.47876 * 30.69727 * 1 2 3 32 32 H 1.09008 * 109.47354 * 150.70170 * 1 2 3 33 33 H 0.96997 * 119.99909 * 180.02562 * 6 5 3 34 34 H 1.08996 * 117.51644 * 145.13133 * 15 13 11 35 35 H 1.09002 * 117.51089 * 0.02562 * 15 13 11 36 36 H 1.08002 * 120.00255 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.08254 * 180.02562 * 19 18 17 38 38 H 1.08008 * 119.82395 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.90338 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.46970 * 30.26860 * 24 23 22 41 41 H 1.08999 * 109.46598 * 150.27001 * 24 23 22 42 42 H 1.09003 * 115.55240 * 29.42185 * 25 24 23 43 43 H 1.08997 * 117.50043 * 0.02562 * 26 25 24 44 44 H 1.09005 * 117.49992 * 145.02771 * 26 25 24 45 45 H 1.09001 * 117.50165 * 214.97850 * 27 25 24 46 46 H 1.09010 * 117.49950 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1873 0.0000 4 1 3.1717 1.2212 -0.3496 5 6 1.5312 2.3470 0.4497 6 7 0.4167 2.2708 1.1419 7 14 2.2828 4.0146 0.0705 8 1 2.3632 4.1983 -1.4008 9 1 1.4359 5.0842 0.6569 10 1 3.6466 4.0869 0.6536 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.7114 -2.6269 0.8409 15 6 2.0988 -3.7016 -0.5718 16 6 0.9677 -3.0427 -1.3510 17 6 1.2139 -2.3026 -2.6388 18 6 2.2396 -1.5002 -3.0858 19 6 2.1827 -0.9464 -4.3525 20 6 1.0937 -1.2009 -5.1663 21 6 0.0638 -2.0034 -4.7216 22 6 0.1115 -2.5620 -3.4462 23 7 -0.7877 -3.3985 -2.7821 24 6 -2.0507 -3.8636 -3.3608 25 6 -3.1626 -2.8675 -3.0256 26 6 -4.3129 -3.3623 -2.1464 27 6 -4.5419 -3.1154 -3.6396 28 6 -0.3630 -3.7241 -1.5471 29 8 -0.9391 -4.4301 -0.7466 30 1 -0.3634 0.0125 1.0277 31 1 -0.3635 0.8836 -0.5246 32 1 -0.3634 -0.8963 -0.5029 33 1 -0.0158 3.0804 1.4555 34 1 1.8939 -4.6646 -0.1043 35 1 3.1136 -3.5664 -0.9459 36 1 3.0884 -1.3031 -2.4477 37 1 2.9866 -0.3171 -4.7049 38 1 1.0492 -0.7683 -6.1549 39 1 -0.7834 -2.1970 -5.3629 40 1 -1.9474 -3.9422 -4.4430 41 1 -2.3015 -4.8406 -2.9478 42 1 -2.8450 -1.8320 -2.9032 43 1 -4.2773 -4.3973 -1.8064 44 1 -4.7523 -2.6522 -1.4458 45 1 -5.1319 -2.2431 -3.9208 46 1 -4.6573 -3.9885 -4.2821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179721914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = 41.375882 kcal Electronic energy + Delta-G solvation = -30672.950039 eV Core-core repulsion = 26723.257798 eV Total energy + Delta-G solvation = -3949.692241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68263 -38.75887 -38.27159 -37.58170 -35.81319 -35.45846 -34.52808 -31.58506 -30.80087 -29.98978 -27.74703 -26.49909 -25.21686 -24.43038 -22.73427 -22.59552 -22.29997 -21.39303 -20.71557 -19.65354 -18.62803 -17.12473 -17.05655 -16.82993 -16.18654 -15.79175 -15.45389 -15.37884 -14.77736 -14.54699 -14.19370 -14.11652 -14.02811 -13.94215 -13.52044 -13.17400 -12.81908 -12.75494 -12.49162 -12.01159 -11.93167 -11.90387 -11.68099 -11.53205 -11.38147 -11.26529 -11.02214 -10.85163 -10.73763 -10.68214 -10.43212 -10.40472 -10.26882 -10.16718 -10.08481 -9.73885 -9.03858 -8.60067 -8.41116 -7.75962 -7.70502 -6.35481 -3.89232 1.29343 1.54043 2.44528 2.68730 3.16315 3.22918 3.26072 3.60088 3.69274 3.94641 4.04085 4.23759 4.33616 4.48805 4.53354 4.66214 4.73111 4.80540 4.89924 5.02982 5.09578 5.13168 5.19762 5.27796 5.32638 5.33232 5.42556 5.49130 5.65200 5.75307 5.77453 5.78814 5.90091 5.94445 5.99058 6.01872 6.17179 6.24650 6.31347 6.40646 6.56543 6.76273 6.81363 6.85968 6.87159 7.18899 7.25041 7.53718 8.02704 8.08744 8.44504 9.14352 9.38926 9.95275 10.68622 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.004337 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.042025 B = 6455.108998 C = 6690.739344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.427 5.427 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.877 5.877 7 Si 0.925 3.075 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.471 3.529 12 O -0.585 6.585 13 C -0.106 4.106 14 H 0.126 0.874 15 C -0.097 4.097 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.050 4.050 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.144 4.144 22 C 0.142 3.858 23 N -0.545 5.545 24 C 0.145 3.855 25 C -0.176 4.176 26 C -0.171 4.171 27 C -0.173 4.173 28 C 0.564 3.436 29 O -0.501 6.501 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.269 0.731 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.735 -9.443 -12.507 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.144 5.144 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.516 5.516 7 Si 0.751 3.249 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.197 1.197 11 C 0.258 3.742 12 O -0.471 6.471 13 C -0.128 4.128 14 H 0.143 0.857 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.094 4.094 18 C -0.068 4.068 19 C -0.155 4.155 20 C -0.109 4.109 21 C -0.165 4.165 22 C 0.047 3.953 23 N -0.267 5.267 24 C 0.024 3.976 25 C -0.195 4.195 26 C -0.208 4.208 27 C -0.210 4.210 28 C 0.354 3.646 29 O -0.375 6.375 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.763 -9.748 -11.949 16.839 hybrid contribution -0.257 1.054 -0.067 1.087 sum -7.019 -8.694 -12.016 16.409 Atomic orbital electron populations 1.21419 0.81183 0.98861 1.01263 1.43460 1.05427 1.04501 1.61015 1.19599 0.99350 0.83444 1.40938 0.88213 1.25336 0.96547 1.00093 0.95150 1.70018 1.18878 1.29508 1.33147 0.86021 0.79035 0.80938 0.78885 1.19841 1.20974 1.19693 1.18841 0.87266 0.83326 0.84725 1.90515 1.13311 1.86569 1.56701 1.22349 1.01706 0.95645 0.93053 0.85661 1.22879 0.95517 0.96426 0.98641 1.20224 0.96179 1.04895 0.93190 1.18913 0.95630 1.01430 0.93408 1.20562 0.97718 0.93087 0.95447 1.21037 0.99089 1.01317 0.94088 1.20801 0.93260 0.97208 0.99608 1.20189 1.00806 1.01941 0.93527 1.18152 0.89632 0.93740 0.93753 1.45626 1.19325 1.46330 1.15387 1.21151 0.80798 0.96872 0.98808 1.22733 0.89752 1.00912 1.06092 1.23043 1.01856 1.02577 0.93317 1.22953 0.98228 1.03417 0.96428 1.19458 0.85489 0.79363 0.80267 1.90720 1.62598 1.37644 1.46544 0.92591 0.91369 0.95833 0.92123 0.87243 0.86408 0.84485 0.85511 0.85632 0.86175 0.89405 0.89297 0.87155 0.88513 0.88634 0.88551 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.72 8.54 59.84 0.51 3.23 16 2 N -0.43 -10.80 3.02 -122.20 -0.37 -11.16 16 3 C -0.31 -8.30 9.28 -14.93 -0.14 -8.44 16 4 H 0.10 2.80 7.42 -52.48 -0.39 2.41 16 5 C 0.03 0.85 5.03 -17.47 -0.09 0.76 16 6 N -0.88 -23.33 10.80 55.50 0.60 -22.73 16 7 Si 0.92 20.43 29.58 -169.99 -5.03 15.40 16 8 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 C 0.47 11.24 5.51 -10.99 -0.06 11.18 16 12 O -0.59 -15.43 15.47 5.55 0.09 -15.34 16 13 C -0.11 -2.08 4.35 -92.04 -0.40 -2.48 16 14 H 0.13 2.40 8.14 -51.93 -0.42 1.98 16 15 C -0.10 -1.61 9.80 -27.00 -0.26 -1.88 16 16 C -0.14 -2.48 1.88 -157.52 -0.30 -2.78 16 17 C -0.09 -1.57 5.73 -104.58 -0.60 -2.17 16 18 C -0.05 -0.86 9.26 -39.74 -0.37 -1.23 16 19 C -0.14 -1.96 10.06 -39.51 -0.40 -2.36 16 20 C -0.09 -1.12 10.02 -39.67 -0.40 -1.52 16 21 C -0.14 -1.83 9.73 -39.29 -0.38 -2.22 16 22 C 0.14 2.16 6.70 -83.59 -0.56 1.60 16 23 N -0.55 -8.03 2.74 -113.37 -0.31 -8.34 16 24 C 0.15 1.66 6.02 -4.04 -0.02 1.64 16 25 C -0.18 -1.99 6.01 -90.62 -0.54 -2.53 16 26 C -0.17 -1.82 10.18 -26.69 -0.27 -2.09 16 27 C -0.17 -1.51 10.25 -26.69 -0.27 -1.79 16 28 C 0.56 9.70 7.98 -11.02 -0.09 9.61 16 29 O -0.50 -9.42 17.69 5.55 0.10 -9.33 16 30 H 0.06 1.36 7.62 -51.92 -0.40 0.96 16 31 H 0.07 1.66 7.03 -51.93 -0.36 1.29 16 32 H 0.02 0.49 6.41 -51.92 -0.33 0.16 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.12 1.96 7.89 -51.93 -0.41 1.55 16 36 H 0.14 2.68 6.63 -52.49 -0.35 2.33 16 37 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.12 1.22 7.70 -52.49 -0.40 0.81 16 40 H 0.09 0.80 7.62 -51.93 -0.40 0.41 16 41 H 0.09 1.01 7.70 -51.93 -0.40 0.61 16 42 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -31.04 384.28 -10.15 -41.19 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.37 Total: 7.97 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -4.64 Total: -3.45 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.08 Total: -42.24 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.18 Total: -24.67 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.04 -10.15 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds