Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37099 * 119.99734 * 2 1 4 4 H 1.08003 * 119.99842 * 201.94550 * 3 2 1 5 5 C 1.38944 * 120.00417 * 21.94763 * 3 2 1 6 6 N 1.31419 * 119.99845 * 15.04796 * 5 3 2 7 7 Si 1.86799 * 120.00403 * 195.04981 * 5 3 2 8 8 H 1.48491 * 109.47298 * 59.99723 * 7 5 3 9 9 H 1.48499 * 109.47207 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46970 * 299.99561 * 7 5 3 11 11 C 1.34777 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00258 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00110 * 0.02562 * 11 2 1 14 14 H 1.09005 * 115.55447 * 300.99983 * 13 11 2 15 15 C 1.53134 * 117.55744 * 155.19371 * 13 11 2 16 16 C 1.52334 * 117.52001 * 86.74698 * 13 11 2 17 17 C 1.50553 * 121.91952 * 356.25983 * 16 13 11 18 18 C 1.37684 * 133.31602 * 36.30853 * 17 16 13 19 19 C 1.38366 * 119.98601 * 179.97438 * 18 17 16 20 20 C 1.38304 * 119.83075 * 0.02562 * 19 18 17 21 21 C 1.37931 * 120.35167 * 0.02562 * 20 19 18 22 22 C 1.39091 * 105.97629 * 216.50945 * 17 16 13 23 23 N 1.39620 * 110.24708 * 359.63459 * 22 17 16 24 24 C 1.46504 * 123.88806 * 180.16130 * 23 22 17 25 25 C 1.52999 * 109.46874 * 270.26644 * 24 23 22 26 26 C 1.53000 * 117.49794 * 243.74558 * 25 24 23 27 27 C 1.53000 * 117.49638 * 175.08769 * 25 24 23 28 28 C 1.34602 * 112.21955 * 0.40537 * 23 22 17 29 29 O 1.21288 * 126.61983 * 179.79110 * 28 23 22 30 30 H 1.09008 * 109.47069 * 270.69593 * 1 2 3 31 31 H 1.08997 * 109.47876 * 30.69727 * 1 2 3 32 32 H 1.09008 * 109.47354 * 150.70170 * 1 2 3 33 33 H 0.96997 * 119.99909 * 180.02562 * 6 5 3 34 34 H 1.08996 * 117.51644 * 145.13133 * 15 13 11 35 35 H 1.09002 * 117.51089 * 0.02562 * 15 13 11 36 36 H 1.08002 * 120.00255 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.08254 * 180.02562 * 19 18 17 38 38 H 1.08008 * 119.82395 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.90338 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.46970 * 30.26860 * 24 23 22 41 41 H 1.08999 * 109.46598 * 150.27001 * 24 23 22 42 42 H 1.09003 * 115.55240 * 29.42185 * 25 24 23 43 43 H 1.08997 * 117.50043 * 0.02562 * 26 25 24 44 44 H 1.09005 * 117.49992 * 145.02771 * 26 25 24 45 45 H 1.09001 * 117.50165 * 214.97850 * 27 25 24 46 46 H 1.09010 * 117.49950 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1873 0.0000 4 1 3.1717 1.2212 -0.3496 5 6 1.5312 2.3470 0.4497 6 7 0.4167 2.2708 1.1419 7 14 2.2828 4.0146 0.0705 8 1 2.3632 4.1983 -1.4008 9 1 1.4359 5.0842 0.6569 10 1 3.6466 4.0869 0.6536 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.7114 -2.6269 0.8409 15 6 2.0988 -3.7016 -0.5718 16 6 0.9677 -3.0427 -1.3510 17 6 1.2139 -2.3026 -2.6388 18 6 2.2396 -1.5002 -3.0858 19 6 2.1827 -0.9464 -4.3525 20 6 1.0937 -1.2009 -5.1663 21 6 0.0638 -2.0034 -4.7216 22 6 0.1115 -2.5620 -3.4462 23 7 -0.7877 -3.3985 -2.7821 24 6 -2.0507 -3.8636 -3.3608 25 6 -3.1626 -2.8675 -3.0256 26 6 -4.3129 -3.3623 -2.1464 27 6 -4.5419 -3.1154 -3.6396 28 6 -0.3630 -3.7241 -1.5471 29 8 -0.9391 -4.4301 -0.7466 30 1 -0.3634 0.0125 1.0277 31 1 -0.3635 0.8836 -0.5246 32 1 -0.3634 -0.8963 -0.5029 33 1 -0.0158 3.0804 1.4555 34 1 1.8939 -4.6646 -0.1043 35 1 3.1136 -3.5664 -0.9459 36 1 3.0884 -1.3031 -2.4477 37 1 2.9866 -0.3171 -4.7049 38 1 1.0492 -0.7683 -6.1549 39 1 -0.7834 -2.1970 -5.3629 40 1 -1.9474 -3.9422 -4.4430 41 1 -2.3015 -4.8406 -2.9478 42 1 -2.8450 -1.8320 -2.9032 43 1 -4.2773 -4.3973 -1.8064 44 1 -4.7523 -2.6522 -1.4458 45 1 -5.1319 -2.2431 -3.9208 46 1 -4.6573 -3.9885 -4.2821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179721914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = 25.849524 kcal Electronic energy + Delta-G solvation = -30673.623312 eV Core-core repulsion = 26723.257798 eV Total energy + Delta-G solvation = -3950.365514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.95345 -40.48823 -39.49343 -38.58618 -37.33792 -36.67043 -36.40863 -33.60776 -31.96762 -31.07319 -28.86382 -28.46100 -27.01859 -25.73072 -24.45760 -23.56638 -23.21510 -22.53575 -21.71930 -20.88207 -20.34876 -18.95042 -18.36788 -18.21227 -17.77077 -17.05686 -16.87734 -16.59046 -16.36119 -15.95401 -15.83029 -15.30786 -15.17373 -15.10016 -15.00540 -14.77242 -14.07424 -13.97066 -13.74027 -13.59408 -13.44410 -13.26120 -13.06687 -12.98459 -12.90607 -12.68920 -12.48395 -12.39248 -12.23480 -12.14641 -12.02176 -11.66382 -11.53055 -11.29242 -11.12165 -11.03270 -10.89929 -10.42521 -9.73364 -9.71053 -8.92194 -8.36367 -5.98887 0.06811 0.38844 1.14634 1.39437 1.40783 1.51411 1.55404 1.94458 2.24112 2.60926 2.77355 2.85720 2.95753 3.08799 3.10356 3.35941 3.41026 3.66869 3.76415 3.87789 3.88725 4.05707 4.06545 4.15337 4.23451 4.30882 4.37197 4.43442 4.49721 4.55369 4.60326 4.61488 4.70103 4.77254 4.87459 4.91298 4.99074 4.99510 5.08295 5.20320 5.20827 5.24106 5.43955 5.45854 5.61526 5.63569 5.69692 6.05311 6.10784 6.43302 6.76220 7.12428 7.40930 7.98341 8.67121 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.004337 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.042025 B = 6455.108998 C = 6690.739344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.442 5.442 3 C -0.338 4.338 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.898 5.898 7 Si 0.989 3.011 8 H -0.264 1.264 9 H -0.273 1.273 10 H -0.274 1.274 11 C 0.475 3.525 12 O -0.618 6.618 13 C -0.128 4.128 14 H 0.127 0.873 15 C -0.081 4.081 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.075 4.075 19 C -0.142 4.142 20 C -0.077 4.077 21 C -0.130 4.130 22 C 0.134 3.866 23 N -0.538 5.538 24 C 0.142 3.858 25 C -0.190 4.190 26 C -0.188 4.188 27 C -0.141 4.141 28 C 0.562 3.438 29 O -0.522 6.522 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.273 0.727 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -9.588 -15.687 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.159 5.159 3 C -0.465 4.465 4 H 0.097 0.903 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.812 3.188 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.199 1.199 11 C 0.264 3.736 12 O -0.505 6.505 13 C -0.150 4.150 14 H 0.145 0.855 15 C -0.118 4.118 16 C -0.139 4.139 17 C -0.123 4.123 18 C -0.094 4.094 19 C -0.161 4.161 20 C -0.095 4.095 21 C -0.151 4.151 22 C 0.039 3.961 23 N -0.258 5.258 24 C 0.022 3.978 25 C -0.210 4.210 26 C -0.225 4.225 27 C -0.178 4.178 28 C 0.351 3.649 29 O -0.399 6.399 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.159 0.841 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.531 -9.897 -15.153 20.009 hybrid contribution 0.304 1.079 0.874 1.421 sum -8.227 -8.819 -14.279 18.691 Atomic orbital electron populations 1.21162 0.80258 0.98862 1.00201 1.43607 1.06005 1.04607 1.61639 1.19597 0.99158 0.85039 1.42734 0.90307 1.26120 0.96902 1.03040 0.94336 1.70097 1.19682 1.30607 1.33246 0.85065 0.78064 0.76594 0.79101 1.18834 1.19779 1.19911 1.19412 0.87074 0.84356 0.82774 1.90471 1.14993 1.87411 1.57641 1.22056 1.03305 0.94575 0.95061 0.85527 1.22966 0.95276 0.96061 0.97500 1.20306 0.97014 1.04291 0.92276 1.18976 0.96939 1.02598 0.93790 1.20428 0.97216 0.95052 0.96658 1.21306 1.00545 1.01035 0.93179 1.21267 0.91662 0.95877 1.00729 1.20661 1.01701 1.00143 0.92546 1.18362 0.88933 0.94214 0.94576 1.45628 1.20162 1.45592 1.14430 1.21454 0.79129 0.96725 1.00475 1.22635 0.90728 0.99703 1.07889 1.23086 1.02289 1.02309 0.94855 1.23054 0.95460 1.04430 0.94870 1.19339 0.85141 0.79315 0.81091 1.90701 1.63007 1.38766 1.47423 0.94053 0.92733 0.94185 0.91685 0.84713 0.86921 0.88149 0.84110 0.81426 0.82384 0.86142 0.89167 0.89247 0.88604 0.89517 0.87611 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.72 8.54 127.77 1.09 7.81 16 2 N -0.44 -23.39 3.02 -658.90 -1.99 -25.38 16 3 C -0.34 -19.14 9.28 84.04 0.78 -18.36 16 4 H 0.08 4.69 7.42 -2.91 -0.02 4.67 16 5 C 0.00 -0.11 5.03 84.92 0.43 0.32 16 6 N -0.90 -48.60 10.80 21.66 0.23 -48.37 16 7 Si 0.99 42.24 29.58 68.60 2.03 44.27 16 8 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 C 0.47 23.90 5.51 87.66 0.48 24.39 16 12 O -0.62 -34.59 15.47 -3.07 -0.05 -34.64 16 13 C -0.13 -5.25 4.35 -11.72 -0.05 -5.30 16 14 H 0.13 5.08 8.14 -2.38 -0.02 5.06 16 15 C -0.08 -2.75 9.80 30.42 0.30 -2.46 16 16 C -0.13 -4.84 1.88 -54.13 -0.10 -4.94 16 17 C -0.12 -4.17 5.73 -19.84 -0.11 -4.28 16 18 C -0.07 -2.67 9.26 22.17 0.21 -2.46 16 19 C -0.14 -3.92 10.06 22.32 0.22 -3.70 16 20 C -0.08 -1.62 10.02 22.21 0.22 -1.40 16 21 C -0.13 -2.81 9.73 22.46 0.22 -2.59 16 22 C 0.13 3.82 6.70 38.36 0.26 4.07 16 23 N -0.54 -14.95 2.74 -631.06 -1.73 -16.68 16 24 C 0.14 2.85 6.02 86.38 0.52 3.37 16 25 C -0.19 -3.88 6.01 -10.79 -0.06 -3.95 16 26 C -0.19 -3.74 10.18 30.62 0.31 -3.43 16 27 C -0.14 -1.99 10.25 30.62 0.31 -1.67 16 28 C 0.56 19.10 7.98 87.71 0.70 19.80 16 29 O -0.52 -19.56 17.69 -3.06 -0.05 -19.61 16 30 H 0.04 2.08 7.62 -2.38 -0.02 2.06 16 31 H 0.05 2.74 7.03 -2.39 -0.02 2.72 16 32 H 0.04 1.75 6.41 -2.38 -0.02 1.74 16 33 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 35 H 0.11 3.94 7.89 -2.39 -0.02 3.93 16 36 H 0.10 4.26 6.63 -2.91 -0.02 4.24 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.16 2.24 7.70 -2.91 -0.02 2.22 16 40 H 0.12 1.62 7.62 -2.39 -0.02 1.60 16 41 H 0.09 1.82 7.70 -2.39 -0.02 1.80 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.10 1.90 8.03 -2.39 -0.02 1.88 16 44 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -71.03 384.28 5.17 -65.87 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 1.00 Total: 29.31 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.72 Total: 5.22 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -3.48 Total: -90.43 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.10 Total: -54.25 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -71.03 5.17 -65.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.719 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds