Wall clock time and date at job start Sat Apr 11 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37101 * 119.99817 * 2 1 4 4 H 1.08007 * 119.99712 * 201.32122 * 3 2 1 5 5 C 1.38942 * 120.00352 * 21.31507 * 3 2 1 6 6 N 1.31412 * 119.99726 * 15.89937 * 5 3 2 7 7 Si 1.86800 * 120.00353 * 195.90186 * 5 3 2 8 8 H 1.48492 * 109.47542 * 94.97068 * 7 5 3 9 9 H 1.48504 * 109.47160 * 214.97616 * 7 5 3 10 10 H 1.48501 * 109.46770 * 334.96775 * 7 5 3 11 11 C 1.34775 * 120.00005 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99967 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00158 * 0.02562 * 11 2 1 14 14 H 1.09008 * 115.58385 * 61.47878 * 13 11 2 15 15 C 1.53134 * 117.51804 * 207.25791 * 13 11 2 16 16 C 1.52333 * 117.51850 * 275.69116 * 13 11 2 17 17 C 1.50552 * 121.92114 * 3.77988 * 16 13 11 18 18 C 1.37676 * 133.31947 * 323.74440 * 17 16 13 19 19 C 1.38372 * 119.98966 * 179.97438 * 18 17 16 20 20 C 1.38311 * 119.82880 * 359.97438 * 19 18 17 21 21 C 1.37930 * 120.35199 * 0.02562 * 20 19 18 22 22 C 1.39100 * 105.97222 * 143.71613 * 17 16 13 23 23 N 1.39612 * 110.24888 * 359.97438 * 22 17 16 24 24 C 1.46504 * 123.88720 * 180.02562 * 23 22 17 25 25 C 1.53003 * 109.47313 * 89.97686 * 24 23 22 26 26 C 1.52993 * 117.49599 * 243.74504 * 25 24 23 27 27 C 1.52994 * 117.49881 * 175.08612 * 25 24 23 28 28 C 1.34600 * 112.22151 * 0.02562 * 23 22 17 29 29 O 1.21294 * 126.61973 * 180.02562 * 28 23 22 30 30 H 1.08999 * 109.46819 * 273.74892 * 1 2 3 31 31 H 1.08997 * 109.46847 * 33.75152 * 1 2 3 32 32 H 1.09001 * 109.46650 * 153.75492 * 1 2 3 33 33 H 0.97003 * 120.00253 * 180.02562 * 6 5 3 34 34 H 1.09000 * 117.51993 * 0.02562 * 15 13 11 35 35 H 1.09001 * 117.52052 * 214.88014 * 15 13 11 36 36 H 1.08007 * 120.00684 * 359.95021 * 18 17 16 37 37 H 1.07993 * 120.08763 * 180.27017 * 19 18 17 38 38 H 1.07995 * 119.82054 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.90722 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.46921 * 209.97706 * 24 23 22 41 41 H 1.09003 * 109.47169 * 329.97214 * 24 23 22 42 42 H 1.09000 * 115.54625 * 29.41343 * 25 24 23 43 43 H 1.09001 * 117.50318 * 0.02562 * 26 25 24 44 44 H 1.09000 * 117.49946 * 145.01548 * 26 25 24 45 45 H 1.08996 * 117.49607 * 214.97702 * 27 25 24 46 46 H 1.09002 * 117.50286 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1751 1.2193 -0.3401 5 6 1.5271 2.3495 0.4374 6 7 0.4150 2.2764 1.1336 7 14 2.2697 4.0158 0.0357 8 1 1.6340 4.5583 -1.1917 9 1 2.0357 4.9479 1.1678 10 1 3.7301 3.8658 -0.1881 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.7439 -2.6454 -0.8636 15 6 2.0770 -3.6885 0.6231 16 6 0.9170 -3.0145 1.3448 17 6 1.1142 -2.2473 2.6251 18 6 2.1215 -1.4340 3.0933 19 6 2.0162 -0.8531 4.3447 20 6 0.8972 -1.0917 5.1219 21 6 -0.1141 -1.9059 4.6564 22 6 -0.0157 -2.4950 3.3976 23 7 -0.8915 -3.3416 2.7153 24 6 -2.1756 -3.7953 3.2551 25 6 -3.2738 -2.8070 2.8574 26 6 -3.9833 -2.0494 3.9815 27 6 -4.7143 -3.1643 3.2292 28 6 -0.4200 -3.6930 1.5046 29 8 -0.9657 -4.4154 0.6974 30 1 -0.3633 0.0672 1.0255 31 1 -0.3633 0.8544 -0.5710 32 1 -0.3633 -0.9218 -0.4545 33 1 -0.0205 3.0877 1.4387 34 1 3.0767 -3.5444 1.0329 35 1 1.8903 -4.6615 0.1686 36 1 2.9941 -1.2496 2.4840 37 1 2.8034 -0.2114 4.7118 38 1 0.8153 -0.6386 6.0988 39 1 -0.9848 -2.0870 5.2690 40 1 -2.4109 -4.7809 2.8533 41 1 -2.1135 -3.8514 4.3419 42 1 -3.1128 -2.2785 1.9178 43 1 -3.6675 -2.2548 5.0043 44 1 -4.2895 -1.0227 3.7813 45 1 -5.5010 -2.8705 2.5344 46 1 -4.8797 -4.1036 3.7568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179721915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:20 Heat of formation + Delta-G solvation = 27.370589 kcal Electronic energy + Delta-G solvation = -30919.498112 eV Core-core repulsion = 26969.198556 eV Total energy + Delta-G solvation = -3950.299556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.92098 -40.47139 -39.46449 -38.58530 -37.31398 -36.63756 -36.39776 -33.58279 -31.92625 -31.08689 -28.81071 -28.43262 -26.98875 -25.75155 -24.44801 -23.46638 -23.24906 -22.48976 -21.83318 -20.75407 -20.32767 -18.91539 -18.39029 -18.25870 -17.72761 -16.96958 -16.90690 -16.53384 -16.33095 -16.01932 -15.93067 -15.23596 -15.17740 -15.10247 -14.79325 -14.74890 -13.99436 -13.94600 -13.77990 -13.73534 -13.38663 -13.22365 -13.08486 -12.98154 -12.89748 -12.71431 -12.43709 -12.36018 -12.17716 -12.10583 -12.02167 -11.64590 -11.54358 -11.21096 -11.08777 -11.00515 -10.94625 -10.40891 -9.70673 -9.66789 -8.88917 -8.32112 -5.95014 0.10170 0.42997 1.16144 1.37396 1.41820 1.53267 1.57437 1.96451 2.24783 2.61798 2.82480 2.86371 2.98706 3.09162 3.13092 3.39017 3.41469 3.69517 3.80029 3.88646 3.95078 3.99693 4.05148 4.17840 4.22103 4.32416 4.35516 4.47744 4.52047 4.57446 4.61441 4.63371 4.72698 4.79512 4.88060 4.93369 5.00524 5.01952 5.10384 5.21152 5.25727 5.26170 5.46662 5.47332 5.63771 5.65762 5.70876 6.07245 6.13385 6.45629 6.77094 7.15262 7.43097 8.00444 8.69437 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.004705 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.865883 B = 5949.127941 C = 6512.865361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.439 5.439 3 C -0.342 4.342 4 H 0.074 0.926 5 C 0.006 3.994 6 N -0.883 5.883 7 Si 0.984 3.016 8 H -0.270 1.270 9 H -0.274 1.274 10 H -0.274 1.274 11 C 0.472 3.528 12 O -0.620 6.620 13 C -0.127 4.127 14 H 0.134 0.866 15 C -0.081 4.081 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.068 4.068 19 C -0.143 4.143 20 C -0.079 4.079 21 C -0.129 4.129 22 C 0.136 3.864 23 N -0.536 5.536 24 C 0.143 3.857 25 C -0.195 4.195 26 C -0.167 4.167 27 C -0.156 4.156 28 C 0.562 3.438 29 O -0.524 6.524 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.272 0.728 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -9.301 10.993 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.156 5.156 3 C -0.470 4.470 4 H 0.092 0.908 5 C -0.197 4.197 6 N -0.521 5.521 7 Si 0.808 3.192 8 H -0.195 1.195 9 H -0.199 1.199 10 H -0.199 1.199 11 C 0.261 3.739 12 O -0.508 6.508 13 C -0.148 4.148 14 H 0.151 0.849 15 C -0.118 4.118 16 C -0.139 4.139 17 C -0.119 4.119 18 C -0.087 4.087 19 C -0.162 4.162 20 C -0.097 4.097 21 C -0.149 4.149 22 C 0.041 3.959 23 N -0.257 5.257 24 C 0.023 3.977 25 C -0.214 4.214 26 C -0.204 4.204 27 C -0.193 4.193 28 C 0.352 3.648 29 O -0.401 6.401 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.182 0.818 39 H 0.174 0.826 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.092 0.908 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.228 -9.611 10.645 17.054 hybrid contribution 0.386 1.241 -0.795 1.523 sum -8.842 -8.369 9.850 15.660 Atomic orbital electron populations 1.21214 0.80218 0.98576 1.00794 1.43601 1.05991 1.04572 1.61411 1.19567 0.98714 0.85022 1.43697 0.90763 1.25979 0.96894 1.02451 0.94368 1.70114 1.19308 1.30131 1.32533 0.85060 0.78489 0.77443 0.78221 1.19497 1.19859 1.19915 1.19399 0.87060 0.84440 0.82982 1.90477 1.15091 1.87440 1.57780 1.22002 1.03133 0.94796 0.94919 0.84857 1.22961 0.94722 0.96261 0.97854 1.20291 0.96640 1.04122 0.92874 1.18921 0.96600 1.02131 0.94203 1.20301 0.97449 0.94803 0.96112 1.21227 1.00254 1.00770 0.93922 1.21197 0.91777 0.96149 1.00621 1.20583 1.01524 0.99783 0.93041 1.18302 0.89125 0.94014 0.94463 1.45604 1.19265 1.44765 1.16016 1.21435 0.78426 0.97170 1.00638 1.22555 0.94840 1.03702 1.00317 1.23148 1.03051 0.97227 0.96955 1.23047 0.92477 1.00643 1.03119 1.19326 0.85208 0.79369 0.80889 1.90698 1.65288 1.38159 1.45987 0.93729 0.93067 0.93747 0.91815 0.87208 0.84461 0.88606 0.84857 0.81821 0.82598 0.88767 0.86579 0.90785 0.86515 0.89359 0.88535 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.46 8.59 127.77 1.10 7.56 16 2 N -0.44 -23.03 3.02 -658.89 -1.99 -25.02 16 3 C -0.34 -19.31 9.29 84.04 0.78 -18.53 16 4 H 0.07 4.48 7.41 -2.91 -0.02 4.46 16 5 C 0.01 0.33 5.03 84.92 0.43 0.76 16 6 N -0.88 -46.27 10.79 21.66 0.23 -46.03 16 7 Si 0.98 42.07 29.58 68.60 2.03 44.10 16 8 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 C 0.47 23.65 5.43 87.66 0.48 24.13 16 12 O -0.62 -34.87 15.69 -3.08 -0.05 -34.91 16 13 C -0.13 -5.13 4.38 -11.72 -0.05 -5.18 16 14 H 0.13 5.05 7.67 -2.38 -0.02 5.03 16 15 C -0.08 -2.77 9.80 30.42 0.30 -2.47 16 16 C -0.14 -4.99 2.41 -54.13 -0.13 -5.12 16 17 C -0.12 -4.33 5.73 -19.84 -0.11 -4.44 16 18 C -0.07 -2.69 9.26 22.17 0.21 -2.48 16 19 C -0.14 -4.65 10.07 22.32 0.22 -4.43 16 20 C -0.08 -2.02 10.02 22.21 0.22 -1.80 16 21 C -0.13 -3.25 9.73 22.46 0.22 -3.03 16 22 C 0.14 4.25 6.70 38.37 0.26 4.51 16 23 N -0.54 -15.87 2.74 -631.03 -1.73 -17.60 16 24 C 0.14 3.09 6.02 86.38 0.52 3.61 16 25 C -0.19 -4.31 6.01 -10.80 -0.06 -4.38 16 26 C -0.17 -2.85 10.18 30.61 0.31 -2.54 16 27 C -0.16 -2.46 10.25 30.61 0.31 -2.15 16 28 C 0.56 19.63 7.98 87.71 0.70 20.33 16 29 O -0.52 -19.77 17.69 -3.07 -0.05 -19.83 16 30 H 0.04 2.25 7.46 -2.39 -0.02 2.23 16 31 H 0.05 2.51 7.22 -2.39 -0.02 2.50 16 32 H 0.04 1.88 6.44 -2.39 -0.02 1.87 16 33 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.11 3.92 7.93 -2.39 -0.02 3.90 16 35 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.10 4.45 6.75 -2.91 -0.02 4.43 16 37 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.16 2.71 7.70 -2.91 -0.02 2.69 16 40 H 0.09 1.99 7.96 -2.38 -0.02 1.97 16 41 H 0.12 1.76 7.35 -2.39 -0.02 1.75 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.12 1.48 8.03 -2.39 -0.02 1.46 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -70.03 384.77 5.13 -64.90 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 1.00 Total: 30.05 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.69 Total: 4.34 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -3.48 Total: -88.65 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -0.10 Total: -54.74 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.03 5.13 -64.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179721915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.267 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds