Wall clock time and date at job start Sat Apr 11 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99532 * 2 1 4 4 H 1.48498 * 109.46836 * 239.99836 * 3 2 1 5 5 H 1.48496 * 109.47587 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46755 * 120.00061 * 3 2 1 7 7 C 1.38807 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99929 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53344 * 109.40631 * 295.11583 * 11 10 9 13 13 C 1.53194 * 109.15158 * 178.68522 * 12 11 10 14 14 N 1.46931 * 108.89289 * 54.57587 * 13 12 11 15 15 C 1.34774 * 120.62994 * 126.29835 * 14 13 12 16 16 O 1.21547 * 119.99800 * 176.14778 * 15 14 13 17 17 C 1.47897 * 120.00132 * 356.15494 * 15 14 13 18 18 N 1.32129 * 120.03474 * 39.60255 * 17 15 14 19 19 C 1.31980 * 122.77158 * 179.69750 * 18 17 15 20 20 C 1.37780 * 121.72662 * 0.58829 * 19 18 17 21 21 C 1.40387 * 118.72494 * 359.71696 * 20 19 18 22 22 C 1.40646 * 122.27692 * 179.97438 * 21 20 19 23 23 C 1.36641 * 117.95291 * 180.02562 * 22 21 20 24 24 C 1.39400 * 119.92519 * 0.02562 * 23 22 21 25 25 N 1.31208 * 121.85254 * 0.02562 * 24 23 22 26 26 C 1.33254 * 121.22269 * 359.97438 * 25 24 23 27 27 C 1.46923 * 118.73809 * 306.32456 * 14 13 12 28 28 C 1.53045 * 109.45749 * 174.99808 * 11 10 9 29 29 H 0.96997 * 119.99771 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00173 * 359.97438 * 9 7 2 31 31 H 1.08989 * 109.47321 * 59.99202 * 10 9 7 32 32 H 1.08998 * 109.46390 * 299.99212 * 10 9 7 33 33 H 1.08997 * 109.46330 * 55.02694 * 11 10 9 34 34 H 1.09000 * 109.68693 * 58.71777 * 12 11 10 35 35 H 1.09004 * 109.47793 * 298.52082 * 12 11 10 36 36 H 1.08999 * 109.58429 * 294.72226 * 13 12 11 37 37 H 1.08996 * 109.58617 * 174.43465 * 13 12 11 38 38 H 1.08005 * 119.14010 * 180.30280 * 19 18 17 39 39 H 1.07994 * 120.63508 * 179.69379 * 20 19 18 40 40 H 1.07998 * 121.02094 * 0.05528 * 22 21 20 41 41 H 1.08007 * 120.03737 * 179.97438 * 23 22 21 42 42 H 1.07993 * 119.07248 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.58820 * 173.39467 * 27 14 13 44 44 H 1.09007 * 109.58717 * 293.67776 * 27 14 13 45 45 H 1.08994 * 109.49860 * 61.41685 * 28 11 10 46 46 H 1.09007 * 109.52043 * 301.33565 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 6 0.2657 -4.8071 1.3113 13 6 -0.7502 -5.9535 1.2916 14 7 -0.0412 -7.2130 1.0272 15 6 -0.1824 -8.2673 1.8548 16 8 0.3532 -9.3253 1.5881 17 6 -0.9891 -8.1369 3.0875 18 7 -2.1154 -7.4462 3.0708 19 6 -2.8796 -7.3000 4.1369 20 6 -2.5420 -7.8547 5.3520 21 6 -1.3550 -8.5983 5.4478 22 6 -0.9384 -9.1964 6.6506 23 6 0.2328 -9.9002 6.6439 24 6 0.9735 -10.0065 5.4678 25 7 0.5804 -9.4455 4.3488 26 6 -0.5519 -8.7455 4.2876 27 6 0.8250 -7.3011 -0.1563 28 6 1.8253 -6.1414 -0.1226 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6842 -3.7141 0.8920 32 1 2.6854 -3.7148 -0.8879 33 1 0.3805 -4.7135 -0.8404 34 1 -0.2594 -3.8573 1.4121 35 1 0.9459 -4.9384 2.1530 36 1 -1.4856 -5.7765 0.5067 37 1 -1.2530 -6.0129 2.2568 38 1 -3.7913 -6.7267 4.0558 39 1 -3.1780 -7.7198 6.2143 40 1 -1.5264 -9.1027 7.5516 41 1 0.5846 -10.3730 7.5490 42 1 1.8969 -10.5664 5.4780 43 1 1.3635 -8.2486 -0.1452 44 1 0.2177 -7.2365 -1.0592 45 1 2.4910 -6.2599 0.7324 46 1 2.4109 -6.1392 -1.0420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205477438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:48 Heat of formation + Delta-G solvation = 31.165832 kcal Electronic energy + Delta-G solvation = -29064.134981 eV Core-core repulsion = 25146.292751 eV Total energy + Delta-G solvation = -3917.842230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.47510 -40.98312 -39.10246 -38.84616 -36.55712 -34.89931 -34.41507 -32.72434 -32.43110 -31.93957 -31.36246 -28.38520 -26.63144 -25.54320 -25.21153 -24.49450 -24.23547 -22.99446 -21.67100 -20.57403 -19.75416 -19.12768 -18.62736 -18.38895 -17.59237 -16.97390 -16.70255 -16.52470 -15.87392 -15.71058 -15.58099 -15.40004 -15.35088 -15.30943 -15.14648 -14.45707 -14.36294 -14.25112 -14.04249 -13.96265 -13.65892 -13.48660 -13.16264 -13.05014 -12.91150 -12.72356 -12.25971 -12.19487 -11.96502 -11.86320 -11.71774 -11.57251 -11.40108 -11.35620 -10.93777 -10.79310 -10.37606 -10.25163 -9.75167 -9.46188 -8.98380 -7.94172 -5.22690 -1.08855 -0.36891 0.63533 1.47004 1.50060 1.52853 1.56237 1.78831 2.02051 2.56470 2.87818 3.00441 3.16048 3.38093 3.39316 3.61459 3.69067 3.73432 3.79121 3.88422 3.91868 4.02235 4.17007 4.22977 4.28860 4.34191 4.44686 4.48978 4.54980 4.57937 4.62622 4.72365 4.83174 4.85642 4.93340 4.95970 5.02004 5.05038 5.09626 5.13282 5.22950 5.33302 5.45783 5.51769 5.55920 5.60208 6.24565 6.28308 6.53694 6.84274 7.02934 7.34677 8.10394 8.35466 9.29065 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002580 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.077648 B =10850.109730 C =11510.976654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.159 3.841 11 C -0.084 4.084 12 C -0.116 4.116 13 C 0.109 3.891 14 N -0.593 5.593 15 C 0.572 3.428 16 O -0.550 6.550 17 C 0.101 3.899 18 N -0.448 5.448 19 C 0.051 3.949 20 C -0.092 4.092 21 C -0.103 4.103 22 C -0.050 4.050 23 C -0.153 4.153 24 C 0.132 3.868 25 N -0.497 5.497 26 C 0.082 3.918 27 C 0.115 3.885 28 C -0.114 4.114 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.011 0.989 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.200 0.800 39 H 0.195 0.805 40 H 0.191 0.809 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 -22.533 16.708 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.032 3.968 11 C -0.103 4.103 12 C -0.155 4.155 13 C -0.013 4.013 14 N -0.325 5.325 15 C 0.359 3.641 16 O -0.427 6.427 17 C -0.050 4.050 18 N -0.161 5.161 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.075 4.075 23 C -0.173 4.173 24 C -0.041 4.041 25 N -0.206 5.206 26 C -0.041 4.041 27 C -0.007 4.007 28 C -0.152 4.152 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.216 0.784 39 H 0.212 0.788 40 H 0.208 0.792 41 H 0.204 0.796 42 H 0.202 0.798 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.267 -22.580 14.950 27.588 hybrid contribution 0.013 0.918 1.074 1.413 sum -5.254 -21.662 16.024 27.452 Atomic orbital electron populations 1.69805 1.06467 1.26164 1.59338 1.25544 0.96443 1.00964 1.03624 0.85222 0.77242 0.79236 0.78117 1.20462 1.21903 1.20550 1.19586 0.91414 0.85534 1.41507 0.91049 1.42548 1.05674 1.00966 1.89330 1.20790 0.93783 0.84969 0.97242 1.21256 0.97097 0.94021 0.97878 1.21873 0.98036 0.98242 0.97312 1.22158 0.93718 0.81021 1.04426 1.48075 1.46113 1.12936 1.25332 1.17945 0.80185 0.83746 0.82227 1.90738 1.49440 1.28364 1.74179 1.21098 0.94014 0.96960 0.92901 1.67415 1.03578 1.11813 1.33298 1.23311 0.99603 0.98943 0.87666 1.22928 0.94586 0.93127 1.00608 1.19349 0.96719 1.00134 0.94890 1.22002 0.96276 0.92472 0.96771 1.22527 0.95144 0.99075 1.00581 1.23864 0.99732 0.93058 0.87455 1.68061 1.14137 1.08551 1.29885 1.19559 0.93289 0.97560 0.93737 1.21716 0.92437 0.99610 0.86947 1.21815 0.97485 0.92623 1.03311 0.93925 0.79146 0.97105 0.96007 0.90867 0.91557 0.93440 0.90220 0.87456 0.78377 0.78765 0.79176 0.79587 0.79769 0.89464 0.89658 0.92410 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -38.59 5.32 -343.47 -1.83 -40.42 16 10 C 0.16 6.62 5.65 86.38 0.49 7.11 16 11 C -0.08 -2.81 2.19 -10.66 -0.02 -2.84 16 12 C -0.12 -3.92 5.27 30.77 0.16 -3.76 16 13 C 0.11 3.23 6.02 86.36 0.52 3.75 16 14 N -0.59 -18.39 2.97 -822.25 -2.44 -20.83 16 15 C 0.57 19.68 7.30 86.80 0.63 20.31 16 16 O -0.55 -21.72 15.60 -3.86 -0.06 -21.78 16 17 C 0.10 3.05 6.08 42.46 0.26 3.31 16 18 N -0.45 -11.39 7.19 -184.13 -1.32 -12.71 16 19 C 0.05 0.86 11.12 84.56 0.94 1.80 16 20 C -0.09 -1.14 9.93 22.68 0.23 -0.92 16 21 C -0.10 -1.82 5.75 -21.27 -0.12 -1.94 16 22 C -0.05 -0.48 9.94 22.48 0.22 -0.25 16 23 C -0.15 -1.43 10.03 22.18 0.22 -1.20 16 24 C 0.13 2.27 11.14 85.07 0.95 3.22 16 25 N -0.50 -13.89 9.18 -187.91 -1.73 -15.62 16 26 C 0.08 2.23 6.58 40.63 0.27 2.50 16 27 C 0.11 3.19 6.42 86.36 0.55 3.75 16 28 C -0.11 -3.21 5.36 30.67 0.16 -3.05 16 29 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.38 20.47 6.85 -92.71 -0.63 19.83 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.52 7.16 -2.39 -0.02 2.51 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.11 3.14 4.55 -2.39 -0.01 3.13 16 38 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.20 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.09 2.52 7.03 -2.39 -0.02 2.51 16 44 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -82.62 375.65 2.07 -80.55 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.37 Total: 26.67 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.77 Total: 14.60 kcal Atomic # 7 Polarization: -141.64 SS G_CDS: -7.04 Total: -148.68 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -82.62 2.07 -80.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205477438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.711 kcal (2) G-P(sol) polarization free energy of solvation -82.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds