Wall clock time and date at job start Sat Apr 11 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.47206 * 109.46934 * 179.97438 * 3 2 1 5 5 C 3.40055 * 161.18934 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18629 * 0.02562 * 2 1 3 7 7 N 1.46894 * 109.47139 * 109.74312 * 6 5 4 8 8 C 1.46846 * 110.99686 * 294.20382 * 7 6 5 9 9 C 1.53038 * 109.52457 * 174.15958 * 8 7 6 10 10 C 1.53126 * 109.27529 * 59.18454 * 9 8 7 11 11 C 1.53001 * 109.57439 * 182.41272 * 10 9 8 12 12 N 1.46499 * 109.46579 * 294.71025 * 11 10 9 13 13 C 1.34782 * 119.99529 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00128 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99929 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47167 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99894 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99978 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00132 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47090 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46863 * 120.00071 * 21 19 17 24 24 H 1.48499 * 109.47117 * 240.00028 * 21 19 17 25 25 C 1.53119 * 109.15810 * 302.34432 * 10 9 8 26 26 C 1.46846 * 110.99957 * 170.00017 * 7 6 5 27 27 H 1.08995 * 109.47308 * 300.00295 * 1 2 3 28 28 H 1.09006 * 109.46986 * 60.00726 * 1 2 3 29 29 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47405 * 59.99323 * 3 2 1 31 31 H 1.09000 * 109.47075 * 299.99499 * 3 2 1 32 32 H 1.09001 * 109.47046 * 229.74167 * 6 5 4 33 33 H 1.08996 * 109.47170 * 349.73467 * 6 5 4 34 34 H 1.08996 * 109.46705 * 294.17863 * 8 7 6 35 35 H 1.09001 * 109.46446 * 54.14705 * 8 7 6 36 36 H 1.08998 * 109.50586 * 299.24457 * 9 8 7 37 37 H 1.09000 * 109.50567 * 179.11818 * 9 8 7 38 38 H 1.08996 * 109.52583 * 62.24993 * 10 9 8 39 39 H 1.08999 * 109.47506 * 54.71017 * 11 10 9 40 40 H 1.08997 * 109.46899 * 174.71616 * 11 10 9 41 41 H 0.97001 * 120.00618 * 0.02562 * 12 11 10 42 42 H 1.08999 * 109.46923 * 300.00333 * 15 13 12 43 43 H 1.08999 * 109.46877 * 60.00024 * 15 13 12 44 44 H 0.96998 * 119.99837 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.50675 * 297.71686 * 25 10 9 46 46 H 1.08998 * 109.53566 * 177.61226 * 25 10 9 47 47 H 1.08997 * 109.46231 * 305.84877 * 26 7 6 48 48 H 1.09005 * 109.46400 * 65.83163 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 0.0006 5 6 4.6479 1.0965 0.0005 6 6 6.1154 0.9802 0.0004 7 7 6.6404 1.4079 -1.3031 8 6 6.2122 0.4928 -2.3687 9 6 6.6528 1.0462 -3.7258 10 6 8.1765 1.1978 -3.7393 11 6 8.6192 1.8070 -5.0712 12 7 8.3202 0.8724 -6.1589 13 6 8.6247 1.1989 -7.4307 14 8 9.1466 2.2662 -7.6744 15 6 8.3166 0.2378 -8.5498 16 16 8.8404 0.9583 -10.1254 17 6 8.3758 -0.3382 -11.2243 18 1 7.9147 -1.2349 -10.8372 19 6 8.6025 -0.2072 -12.5874 20 7 9.1650 0.8854 -13.0590 21 14 8.1093 -1.5815 -13.7526 22 1 7.5006 -2.6927 -12.9779 23 1 7.1234 -1.0664 -14.7363 24 1 9.3112 -2.0777 -14.4697 25 6 8.6003 2.1168 -2.5903 26 6 8.1031 1.5324 -1.2661 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.5300 1.6136 0.7847 33 1 6.3977 -0.0565 0.1836 34 1 6.6655 -0.4858 -2.2111 35 1 5.1266 0.3971 -2.3508 36 1 6.1889 2.0187 -3.8903 37 1 6.3486 0.3590 -4.5153 38 1 8.6410 0.2198 -3.6138 39 1 8.0849 2.7422 -5.2385 40 1 9.6915 2.0010 -5.0433 41 1 7.9024 0.0189 -5.9641 42 1 8.8508 -0.6975 -8.3829 43 1 7.2443 0.0438 -8.5772 44 1 9.3230 0.9770 -14.0116 45 1 8.1669 3.1063 -2.7368 46 1 9.6872 2.1952 -2.5681 47 1 8.3909 2.1918 -0.4473 48 1 8.5476 0.5488 -1.1138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222420284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:56 Heat of formation + Delta-G solvation = -37.851912 kcal Electronic energy + Delta-G solvation = -25601.690768 eV Core-core repulsion = 21784.006903 eV Total energy + Delta-G solvation = -3817.683864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.88774 -38.85713 -38.42690 -36.00716 -34.05860 -32.68598 -32.41369 -31.19367 -29.96492 -28.94920 -27.34583 -26.06799 -25.46658 -24.67633 -23.52737 -21.99288 -20.42906 -19.88758 -17.85074 -17.79440 -16.94687 -16.62442 -16.39021 -16.09023 -15.94128 -15.72295 -15.50130 -15.16697 -14.79363 -14.39946 -14.27540 -13.96763 -13.74109 -13.51935 -13.44346 -13.13172 -13.02778 -12.76932 -12.64508 -12.54758 -12.28696 -12.06171 -11.70500 -11.52298 -11.06243 -11.01235 -10.99150 -10.92612 -10.75461 -10.68584 -10.64443 -10.37811 -9.97182 -9.78841 -9.35853 -9.06480 -8.83103 -8.77923 -8.21036 -6.48097 -6.20468 -3.90675 2.03983 2.18349 3.07273 3.14723 3.22407 3.29407 3.30762 3.34635 3.70438 3.75965 3.99267 4.21675 4.38072 4.46365 4.54172 4.65984 4.78180 4.82043 4.85285 4.90383 4.93913 4.98743 5.03949 5.11849 5.14733 5.17520 5.17940 5.21419 5.29316 5.32416 5.43403 5.50460 5.58794 5.64283 5.69356 5.83847 5.84320 5.92677 5.96400 6.14933 6.16585 6.54276 6.58374 6.65166 6.67996 7.20245 7.61224 7.75426 8.36814 8.66201 9.24998 10.87038 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.001722 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.276109 B =16256.199062 C =18160.829423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.178 3.822 4 C -0.184 4.184 5 C -0.140 4.140 6 C 0.165 3.835 7 N -0.536 5.536 8 C 0.055 3.945 9 C -0.112 4.112 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.109 4.109 26 C 0.058 3.942 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 -1.109 31.585 33.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.103 3.897 4 C -0.185 4.185 5 C -0.141 4.141 6 C 0.039 3.961 7 N -0.261 5.261 8 C -0.072 4.072 9 C -0.150 4.150 10 C -0.119 4.119 11 C 0.003 3.997 12 N -0.393 5.393 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.147 4.147 26 C -0.069 4.069 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.183 1.080 30.912 32.564 hybrid contribution -1.071 -3.100 -0.187 3.285 sum -11.254 -2.020 30.725 32.784 Atomic orbital electron populations 1.22802 0.80077 1.03313 1.00359 1.87963 1.20261 1.27004 1.95539 1.19063 0.83695 0.85388 1.01549 1.21631 0.92808 1.03631 1.00446 1.22050 0.93193 0.97357 1.01464 1.18995 0.84532 1.00082 0.92491 1.61913 1.10902 1.50147 1.03181 1.22141 1.00779 0.93167 0.91140 1.21665 0.94983 1.02561 0.95768 1.21459 0.96315 0.99788 0.94354 1.21293 1.00757 0.92924 0.84684 1.46019 1.65295 1.21563 1.06439 1.20298 0.77544 0.87576 0.82906 1.90700 1.41301 1.24012 1.83260 1.23532 1.04886 1.01680 1.00310 1.85398 1.80155 1.25884 0.91995 1.22916 1.46831 1.04664 0.93898 0.90889 1.24994 0.94748 0.96509 0.97365 1.70030 1.40229 1.25866 1.14162 0.86117 0.78321 0.80952 0.80109 1.19629 1.20576 1.20570 1.21559 1.00754 0.99761 0.92628 1.22096 0.86150 0.99950 0.98750 0.93717 0.93548 0.89191 0.90864 0.90583 0.88214 0.92037 0.94607 0.90518 0.90602 0.91121 0.90739 0.91502 0.91628 0.76955 0.89300 0.89280 0.92251 0.90446 0.90774 0.90263 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.36 10.66 -35.23 -0.38 -3.74 16 3 C 0.18 1.29 6.41 34.37 0.22 1.51 16 4 C -0.18 -1.77 13.73 -37.12 -0.51 -2.28 16 5 C -0.14 -1.31 12.34 -37.12 -0.46 -1.77 16 6 C 0.17 1.17 5.46 -6.61 -0.04 1.14 16 7 N -0.54 -4.25 4.63 -238.18 -1.10 -5.35 16 8 C 0.06 0.46 5.30 -3.83 -0.02 0.44 16 9 C -0.11 -0.96 5.23 -26.65 -0.14 -1.10 16 10 C -0.10 -0.84 2.29 -90.49 -0.21 -1.04 16 11 C 0.13 1.48 5.07 -4.04 -0.02 1.46 16 12 N -0.74 -9.91 5.31 -60.29 -0.32 -10.23 16 13 C 0.53 10.05 7.85 -10.98 -0.09 9.96 16 14 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 15 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 21 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.11 -0.79 5.38 -26.65 -0.14 -0.93 16 26 C 0.06 0.38 5.46 -3.83 -0.02 0.36 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.54 7.99 -51.93 -0.41 0.12 16 33 H 0.06 0.39 8.12 -51.93 -0.42 -0.04 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.72 7.11 -51.93 -0.37 0.35 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.59 7.27 -51.93 -0.38 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.40 4.20 7.69 -40.82 -0.31 3.89 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.42 8.02 -51.93 -0.42 0.01 16 48 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 412.25 15.07 6.21 6.21 Total: -1.00 -36.30 412.25 -10.09 -46.38 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.20 Total: -1.42 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.11 Total: -6.99 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.69 Total: -41.19 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.29 Total: -15.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.30 -10.09 -46.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222420284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.532 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds