Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35537 * 117.00022 * 2 1 4 4 C 1.39108 * 120.48079 * 359.97438 * 3 2 1 5 5 C 1.38333 * 118.63646 * 180.02562 * 4 3 2 6 6 C 1.40065 * 119.56897 * 359.97438 * 5 4 3 7 7 C 1.48263 * 119.51466 * 180.02562 * 6 5 4 8 8 C 1.39419 * 120.13054 * 359.72403 * 7 6 5 9 9 C 1.37991 * 119.86896 * 179.69911 * 8 7 6 10 10 C 1.38338 * 120.12993 * 0.57762 * 9 8 7 11 11 C 1.50703 * 119.87152 * 179.69520 * 10 9 8 12 12 N 1.46892 * 109.47185 * 270.02325 * 11 10 9 13 13 C 1.47484 * 111.00217 * 265.96979 * 12 11 10 14 14 C 1.53511 * 87.93089 * 221.29836 * 13 12 11 15 15 O 1.42896 * 114.17127 * 272.37133 * 14 13 12 16 16 C 1.47484 * 111.00045 * 169.99969 * 12 11 10 17 17 C 1.38346 * 120.25931 * 359.72048 * 10 9 8 18 18 C 1.37987 * 120.12827 * 359.97438 * 17 10 9 19 19 N 1.32182 * 120.96840 * 359.74114 * 6 5 4 20 20 C 1.33574 * 121.45875 * 0.52728 * 19 6 5 21 21 C 1.40996 * 119.83233 * 179.75733 * 20 19 6 22 22 H 1.08002 * 120.00227 * 179.72816 * 21 20 19 23 23 C 1.40028 * 119.99873 * 359.44257 * 21 20 19 24 24 N 1.30774 * 120.00278 * 0.28233 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 180.27674 * 23 21 20 26 26 H 1.48504 * 109.47118 * 60.00518 * 25 23 21 27 27 H 1.48504 * 109.47036 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47374 * 300.00624 * 25 23 21 29 29 H 1.09000 * 109.46865 * 299.99873 * 1 2 3 30 30 H 1.08998 * 109.47281 * 59.99963 * 1 2 3 31 31 H 1.09000 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.68499 * 0.04367 * 4 3 2 33 33 H 1.07997 * 120.21517 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.06288 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.93287 * 180.29733 * 9 8 7 36 36 H 1.08999 * 109.46770 * 30.02666 * 11 10 9 37 37 H 1.08996 * 109.46838 * 150.02167 * 11 10 9 38 38 H 1.08997 * 113.47138 * 336.06210 * 13 12 11 39 39 H 1.08995 * 113.47671 * 106.52673 * 13 12 11 40 40 H 1.09004 * 114.16537 * 139.67340 * 14 13 12 41 41 H 0.96696 * 114.00270 * 273.84557 * 15 14 13 42 42 H 1.08997 * 113.47930 * 253.47436 * 16 12 11 43 43 H 1.09002 * 113.47243 * 23.93277 * 16 12 11 44 44 H 1.07995 * 119.93499 * 179.97438 * 17 10 9 45 45 H 1.07996 * 120.06785 * 180.02562 * 18 17 10 46 46 H 0.97005 * 120.00089 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2965 2.3806 -0.0005 5 6 1.9639 3.5923 -0.0011 6 6 3.3644 3.6100 -0.0005 7 6 4.0784 4.9094 -0.0005 8 6 3.3587 6.1034 -0.0068 9 6 4.0288 7.3097 -0.0005 10 6 5.4119 7.3358 0.0001 11 6 6.1377 8.6565 0.0000 12 7 6.3736 9.0856 -1.3849 13 6 7.7061 8.6585 -1.8509 14 6 7.8508 10.0320 -2.5209 15 8 7.3237 10.0943 -3.8476 16 6 6.8647 10.4755 -1.4312 17 6 6.1315 6.1542 0.0001 18 6 5.4724 4.9419 0.0002 19 7 4.0588 2.4853 0.0057 20 6 3.4556 1.2936 0.0011 21 6 4.2301 0.1154 0.0027 22 1 3.7453 -0.8497 0.0034 23 6 5.6281 0.1965 -0.0026 24 7 6.2153 1.3650 -0.0036 25 14 6.6542 -1.3644 -0.0083 26 1 6.3365 -2.1613 -1.2205 27 1 8.0960 -1.0090 -0.0129 28 1 6.3458 -2.1640 1.2044 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2171 2.3461 -0.0003 33 1 1.4086 4.5186 -0.0019 34 1 2.2789 6.0843 -0.0122 35 1 3.4723 8.2353 -0.0006 36 1 5.5327 9.4035 0.5139 37 1 7.0926 8.5463 0.5139 38 1 8.4169 8.4933 -1.0412 39 1 7.6737 7.8309 -2.5594 40 1 8.8444 10.4709 -2.4291 41 1 7.9469 9.8145 -4.5320 42 1 6.1191 11.1879 -1.7842 43 1 7.3508 10.7952 -0.5095 44 1 7.2111 6.1807 0.0001 45 1 6.0350 4.0201 0.0006 46 1 7.1837 1.4212 -0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243637076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = 21.001480 kcal Electronic energy + Delta-G solvation = -28364.714859 eV Core-core repulsion = 24414.139118 eV Total energy + Delta-G solvation = -3950.575741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47918 -39.14436 -38.33052 -36.62261 -35.75604 -33.78367 -32.29578 -30.73206 -30.07531 -29.75301 -27.86740 -26.53878 -26.18906 -25.55636 -23.96231 -22.34459 -21.57637 -20.97790 -20.21641 -19.83856 -17.67026 -17.52840 -16.73062 -16.29934 -16.12413 -15.61160 -15.53607 -14.99500 -14.77060 -14.74068 -14.23622 -13.91882 -13.46023 -13.39830 -13.28645 -13.00779 -12.78195 -12.64066 -12.51911 -12.47781 -12.31210 -11.74333 -11.49177 -11.36695 -11.27342 -11.18754 -10.87626 -10.75762 -10.53431 -10.46612 -10.40401 -10.29301 -10.10619 -9.82187 -9.44174 -8.96904 -8.35001 -8.28463 -8.11239 -7.76002 -6.85418 -6.45661 -4.41499 1.58468 2.08662 2.77490 2.98116 3.09256 3.12772 3.20669 3.62209 3.95927 4.00289 4.27631 4.39553 4.43463 4.61910 4.82643 4.86954 5.07397 5.13902 5.20985 5.38439 5.42373 5.48801 5.53838 5.56647 5.67687 5.70693 5.71009 5.74158 5.88546 5.90484 5.98794 6.02231 6.15787 6.25719 6.33730 6.55665 6.61581 6.68847 6.82603 6.87947 7.02840 7.12785 7.21495 7.29859 7.40285 7.45002 7.58532 7.68355 7.89201 8.18354 8.28454 8.68998 8.97938 9.98948 10.28545 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.002764 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.557290 B =10127.268307 C =11765.942355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.027 4.027 4 C -0.148 4.148 5 C -0.269 4.269 6 C 0.148 3.852 7 C -0.011 4.011 8 C -0.115 4.115 9 C -0.112 4.112 10 C -0.090 4.090 11 C 0.061 3.939 12 N -0.452 5.452 13 C -0.033 4.033 14 C 0.074 3.926 15 O -0.537 6.537 16 C 0.000 4.000 17 C -0.123 4.123 18 C -0.082 4.082 19 N -0.450 5.450 20 C 0.253 3.747 21 C -0.413 4.413 22 H 0.090 0.910 23 C 0.069 3.931 24 N -0.718 5.718 25 Si 0.910 3.090 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.265 1.265 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.380 0.620 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.153 0.847 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 13.113 -1.299 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.075 4.075 4 C -0.173 4.173 5 C -0.292 4.292 6 C 0.007 3.993 7 C -0.012 4.012 8 C -0.134 4.134 9 C -0.130 4.130 10 C -0.091 4.091 11 C -0.066 4.066 12 N -0.174 5.174 13 C -0.162 4.162 14 C 0.014 3.986 15 O -0.342 6.342 16 C -0.129 4.129 17 C -0.141 4.141 18 C -0.100 4.100 19 N -0.164 5.164 20 C 0.125 3.875 21 C -0.445 4.445 22 H 0.108 0.892 23 C -0.156 4.156 24 N -0.340 5.340 25 Si 0.735 3.265 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.190 1.190 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.228 0.772 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.171 0.829 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.708 13.029 -1.297 13.609 hybrid contribution 0.236 -0.533 0.306 0.658 sum 3.944 12.496 -0.991 13.141 Atomic orbital electron populations 1.22762 0.81669 1.01907 0.99968 1.85939 1.18354 1.27857 1.90012 1.20361 0.93703 0.83223 1.10238 1.20875 0.97778 0.92624 1.05973 1.21012 0.94261 0.96246 1.17720 1.19697 0.89445 0.92163 0.97960 1.18803 0.93117 0.91416 0.97857 1.21207 0.99695 0.91678 1.00826 1.20680 0.93439 0.97163 1.01734 1.19451 0.93703 0.93440 1.02524 1.21616 0.99295 0.95448 0.90265 1.69090 1.25295 1.03785 1.19181 1.24634 0.91567 0.99536 1.00459 1.22799 0.95993 0.95933 0.83848 1.86526 1.43719 1.89250 1.14722 1.23966 0.97867 0.94283 0.96746 1.20888 0.98843 0.92177 1.02220 1.21696 0.94255 0.98588 0.95494 1.68869 1.34761 0.95275 1.17544 1.18122 0.84983 0.92086 0.92284 1.19484 0.90609 0.92973 1.41398 0.89167 1.26039 0.98652 0.97270 0.93659 1.70080 1.10424 1.24600 1.28912 0.86338 0.78298 0.81951 0.79947 1.18939 1.20288 1.18953 0.94168 0.94146 0.89840 0.87790 0.88177 0.86188 0.86945 0.90391 0.93150 0.90641 0.89090 0.90795 0.77227 0.88971 0.90254 0.87303 0.82930 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.06 9.61 -18.30 -0.18 -7.23 16 3 C -0.03 -0.67 6.74 -38.06 -0.26 -0.93 16 4 C -0.15 -3.38 9.11 -39.22 -0.36 -3.74 16 5 C -0.27 -6.17 9.46 -38.86 -0.37 -6.54 16 6 C 0.15 3.68 6.74 -82.91 -0.56 3.12 16 7 C -0.01 -0.24 5.88 -104.89 -0.62 -0.85 16 8 C -0.12 -2.15 9.42 -39.23 -0.37 -2.51 16 9 C -0.11 -1.84 9.68 -39.64 -0.38 -2.22 16 10 C -0.09 -1.43 5.47 -104.54 -0.57 -2.00 16 11 C 0.06 0.76 4.93 -4.98 -0.02 0.74 16 12 N -0.45 -5.68 6.32 -246.12 -1.55 -7.23 16 13 C -0.03 -0.34 7.55 -7.54 -0.06 -0.40 16 14 C 0.07 0.66 5.56 -26.20 -0.15 0.51 16 15 O -0.54 -5.46 13.71 -35.23 -0.48 -5.94 16 16 C 0.00 0.00 7.52 -7.54 -0.06 -0.05 16 17 C -0.12 -2.13 9.68 -39.63 -0.38 -2.51 16 18 C -0.08 -1.72 9.57 -39.23 -0.38 -2.09 16 19 N -0.45 -12.26 6.90 -7.57 -0.05 -12.31 16 20 C 0.25 6.99 6.56 -84.86 -0.56 6.44 16 21 C -0.41 -11.14 8.94 -37.87 -0.34 -11.48 16 22 H 0.09 2.36 7.31 -52.49 -0.38 1.98 16 23 C 0.07 1.72 5.50 -17.33 -0.10 1.63 16 24 N -0.72 -18.42 11.08 55.55 0.62 -17.80 16 25 Si 0.91 18.62 29.56 -169.99 -5.02 13.60 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 28 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 29 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 30 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 2.03 6.43 -52.49 -0.34 1.69 16 33 H 0.10 2.01 6.16 -52.49 -0.32 1.69 16 34 H 0.12 2.06 6.16 -52.48 -0.32 1.74 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 37 H 0.05 0.55 7.24 -51.93 -0.38 0.18 16 38 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.38 2.10 9.12 45.56 0.42 2.51 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 44 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.15 3.54 7.15 -52.49 -0.38 3.16 16 46 H 0.27 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -32.14 381.91 -10.83 -42.96 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.39 Total: 9.56 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -4.52 Total: -21.36 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.99 Total: -37.35 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.66 Total: -13.17 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.14 -10.83 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243637076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.966 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds