Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35537 * 117.00022 * 2 1 4 4 C 1.39108 * 120.48079 * 359.97438 * 3 2 1 5 5 C 1.38333 * 118.63646 * 180.02562 * 4 3 2 6 6 C 1.40065 * 119.56897 * 359.97438 * 5 4 3 7 7 C 1.48263 * 119.51466 * 180.02562 * 6 5 4 8 8 C 1.39419 * 120.13054 * 359.72403 * 7 6 5 9 9 C 1.37991 * 119.86896 * 179.69911 * 8 7 6 10 10 C 1.38338 * 120.12993 * 0.57762 * 9 8 7 11 11 C 1.50703 * 119.87152 * 179.69520 * 10 9 8 12 12 N 1.46892 * 109.47185 * 270.02325 * 11 10 9 13 13 C 1.47484 * 111.00217 * 265.96979 * 12 11 10 14 14 C 1.53511 * 87.93089 * 221.29836 * 13 12 11 15 15 O 1.42896 * 114.17127 * 272.37133 * 14 13 12 16 16 C 1.47484 * 111.00045 * 169.99969 * 12 11 10 17 17 C 1.38346 * 120.25931 * 359.72048 * 10 9 8 18 18 C 1.37987 * 120.12827 * 359.97438 * 17 10 9 19 19 N 1.32182 * 120.96840 * 359.74114 * 6 5 4 20 20 C 1.33574 * 121.45875 * 0.52728 * 19 6 5 21 21 C 1.40996 * 119.83233 * 179.75733 * 20 19 6 22 22 H 1.08002 * 120.00227 * 179.72816 * 21 20 19 23 23 C 1.40028 * 119.99873 * 359.44257 * 21 20 19 24 24 N 1.30774 * 120.00278 * 0.28233 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 180.27674 * 23 21 20 26 26 H 1.48504 * 109.47118 * 60.00518 * 25 23 21 27 27 H 1.48504 * 109.47036 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47374 * 300.00624 * 25 23 21 29 29 H 1.09000 * 109.46865 * 299.99873 * 1 2 3 30 30 H 1.08998 * 109.47281 * 59.99963 * 1 2 3 31 31 H 1.09000 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.68499 * 0.04367 * 4 3 2 33 33 H 1.07997 * 120.21517 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.06288 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.93287 * 180.29733 * 9 8 7 36 36 H 1.08999 * 109.46770 * 30.02666 * 11 10 9 37 37 H 1.08996 * 109.46838 * 150.02167 * 11 10 9 38 38 H 1.08997 * 113.47138 * 336.06210 * 13 12 11 39 39 H 1.08995 * 113.47671 * 106.52673 * 13 12 11 40 40 H 1.09004 * 114.16537 * 139.67340 * 14 13 12 41 41 H 0.96696 * 114.00270 * 273.84557 * 15 14 13 42 42 H 1.08997 * 113.47930 * 253.47436 * 16 12 11 43 43 H 1.09002 * 113.47243 * 23.93277 * 16 12 11 44 44 H 1.07995 * 119.93499 * 179.97438 * 17 10 9 45 45 H 1.07996 * 120.06785 * 180.02562 * 18 17 10 46 46 H 0.97005 * 120.00089 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2965 2.3806 -0.0005 5 6 1.9639 3.5923 -0.0011 6 6 3.3644 3.6100 -0.0005 7 6 4.0784 4.9094 -0.0005 8 6 3.3587 6.1034 -0.0068 9 6 4.0288 7.3097 -0.0005 10 6 5.4119 7.3358 0.0001 11 6 6.1377 8.6565 0.0000 12 7 6.3736 9.0856 -1.3849 13 6 7.7061 8.6585 -1.8509 14 6 7.8508 10.0320 -2.5209 15 8 7.3237 10.0943 -3.8476 16 6 6.8647 10.4755 -1.4312 17 6 6.1315 6.1542 0.0001 18 6 5.4724 4.9419 0.0002 19 7 4.0588 2.4853 0.0057 20 6 3.4556 1.2936 0.0011 21 6 4.2301 0.1154 0.0027 22 1 3.7453 -0.8497 0.0034 23 6 5.6281 0.1965 -0.0026 24 7 6.2153 1.3650 -0.0036 25 14 6.6542 -1.3644 -0.0083 26 1 6.3365 -2.1613 -1.2205 27 1 8.0960 -1.0090 -0.0129 28 1 6.3458 -2.1640 1.2044 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2171 2.3461 -0.0003 33 1 1.4086 4.5186 -0.0019 34 1 2.2789 6.0843 -0.0122 35 1 3.4723 8.2353 -0.0006 36 1 5.5327 9.4035 0.5139 37 1 7.0926 8.5463 0.5139 38 1 8.4169 8.4933 -1.0412 39 1 7.6737 7.8309 -2.5594 40 1 8.8444 10.4709 -2.4291 41 1 7.9469 9.8145 -4.5320 42 1 6.1191 11.1879 -1.7842 43 1 7.3508 10.7952 -0.5095 44 1 7.2111 6.1807 0.0001 45 1 6.0350 4.0201 0.0006 46 1 7.1837 1.4212 -0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243637076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = -2.608237 kcal Electronic energy + Delta-G solvation = -28365.738654 eV Core-core repulsion = 24414.139118 eV Total energy + Delta-G solvation = -3951.599535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32620 -40.82878 -39.78055 -38.29391 -36.57579 -35.60354 -33.66936 -32.46620 -31.63561 -31.25190 -29.17810 -28.08536 -27.24497 -26.87115 -25.16705 -23.95864 -23.03959 -22.64931 -21.37065 -20.93103 -19.40273 -18.46982 -18.35094 -17.87551 -17.08361 -16.91934 -16.73045 -16.36867 -16.35326 -16.24911 -15.48825 -15.24420 -14.94599 -14.60303 -14.44944 -14.35407 -14.20090 -14.11605 -14.04516 -13.71739 -13.36399 -13.14220 -12.97644 -12.92078 -12.80772 -12.54072 -12.27209 -12.13423 -11.99125 -11.87287 -11.73327 -11.57872 -11.54008 -11.25501 -10.83709 -10.06732 -9.90137 -9.72853 -9.70722 -9.62790 -8.60784 -8.30391 -6.37434 0.04228 0.64321 0.96105 1.24914 1.40054 1.52024 1.55716 2.24282 2.70307 2.81514 2.94530 3.12778 3.35255 3.63241 3.80015 3.86581 3.90968 3.93749 4.04459 4.15713 4.24206 4.33120 4.36155 4.42645 4.45868 4.53135 4.56335 4.60609 4.64758 4.70320 4.71390 4.78354 4.82208 4.94117 4.98517 5.00476 5.13962 5.22490 5.34262 5.36214 5.48227 5.59530 5.67122 5.77761 5.91041 6.07120 6.09676 6.25271 6.30915 6.39257 6.79985 6.92164 7.12736 8.10675 8.45377 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.002764 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.557290 B =10127.268307 C =11765.942355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C -0.045 4.045 4 C -0.147 4.147 5 C -0.269 4.269 6 C 0.124 3.876 7 C -0.047 4.047 8 C -0.114 4.114 9 C -0.109 4.109 10 C -0.077 4.077 11 C 0.065 3.935 12 N -0.486 5.486 13 C -0.037 4.037 14 C 0.081 3.919 15 O -0.564 6.564 16 C 0.003 3.997 17 C -0.121 4.121 18 C -0.105 4.105 19 N -0.477 5.477 20 C 0.214 3.786 21 C -0.452 4.452 22 H 0.084 0.916 23 C 0.025 3.975 24 N -0.749 5.749 25 Si 0.986 3.014 26 H -0.262 1.262 27 H -0.265 1.265 28 H -0.261 1.261 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.397 0.603 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 15.493 -1.109 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.246 6.246 3 C -0.094 4.094 4 C -0.171 4.171 5 C -0.292 4.292 6 C -0.017 4.017 7 C -0.048 4.048 8 C -0.133 4.133 9 C -0.127 4.127 10 C -0.078 4.078 11 C -0.063 4.063 12 N -0.209 5.209 13 C -0.166 4.166 14 C 0.021 3.979 15 O -0.372 6.372 16 C -0.125 4.125 17 C -0.139 4.139 18 C -0.124 4.124 19 N -0.192 5.192 20 C 0.085 3.915 21 C -0.484 4.484 22 H 0.102 0.898 23 C -0.196 4.196 24 N -0.371 5.371 25 Si 0.806 3.194 26 H -0.186 1.186 27 H -0.189 1.189 28 H -0.186 1.186 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.247 0.753 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.857 15.430 -1.119 15.944 hybrid contribution 0.075 -1.108 0.215 1.131 sum 3.932 14.321 -0.904 14.879 Atomic orbital electron populations 1.23126 0.78499 1.04469 1.00970 1.85880 1.21635 1.27103 1.90028 1.20407 0.93453 0.84761 1.10734 1.21259 0.99508 0.91740 1.04610 1.21414 0.93947 0.97669 1.16141 1.20337 0.90795 0.92821 0.97699 1.18882 0.93610 0.91332 1.01008 1.21359 1.00345 0.91283 1.00304 1.21063 0.93991 0.97423 1.00266 1.19909 0.93849 0.94668 0.99401 1.21642 1.00036 0.93531 0.91052 1.69015 1.26918 1.05958 1.18994 1.24714 0.91243 0.99838 1.00829 1.22896 0.97316 0.94616 0.83071 1.86471 1.45464 1.89362 1.15917 1.24062 0.97907 0.92362 0.98215 1.21048 0.99896 0.91472 1.01530 1.21547 0.94277 0.98898 0.97630 1.68830 1.36056 0.95920 1.18415 1.18609 0.86863 0.92679 0.93318 1.19688 0.91996 0.92785 1.43900 0.89759 1.26901 0.99155 1.00759 0.92815 1.70188 1.10932 1.26595 1.29383 0.85219 0.76870 0.77451 0.79864 1.18640 1.18878 1.18575 0.92997 0.93035 0.86684 0.84226 0.85161 0.84875 0.83811 0.88621 0.91363 0.88830 0.91394 0.87382 0.75252 0.89785 0.87449 0.85377 0.86201 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 9.83 113.37 1.11 1.90 16 2 O -0.33 -15.53 9.61 -88.41 -0.85 -16.38 16 3 C -0.05 -2.34 6.74 23.26 0.16 -2.18 16 4 C -0.15 -6.71 9.11 22.50 0.21 -6.50 16 5 C -0.27 -12.43 9.46 22.74 0.22 -12.21 16 6 C 0.12 6.41 6.74 42.20 0.28 6.69 16 7 C -0.05 -2.13 5.88 -20.04 -0.12 -2.25 16 8 C -0.11 -4.17 9.42 22.50 0.21 -3.96 16 9 C -0.11 -3.35 9.68 22.23 0.22 -3.14 16 10 C -0.08 -2.30 5.47 -19.81 -0.11 -2.41 16 11 C 0.06 1.39 4.93 85.56 0.42 1.81 16 12 N -0.49 -10.90 6.32 -932.96 -5.89 -16.79 16 13 C -0.04 -0.69 7.55 83.58 0.63 -0.06 16 14 C 0.08 1.19 5.56 30.94 0.17 1.36 16 15 O -0.56 -10.40 13.71 -148.98 -2.04 -12.44 16 16 C 0.00 0.04 7.52 83.57 0.63 0.67 16 17 C -0.12 -4.18 9.68 22.24 0.22 -3.97 16 18 C -0.10 -4.61 9.57 22.50 0.22 -4.39 16 19 N -0.48 -27.68 6.90 -177.85 -1.23 -28.90 16 20 C 0.21 12.51 6.56 40.33 0.26 12.78 16 21 C -0.45 -25.91 8.94 23.38 0.21 -25.70 16 22 H 0.08 4.71 7.31 -2.91 -0.02 4.68 16 23 C 0.03 1.33 5.50 85.28 0.47 1.80 16 24 N -0.75 -40.76 11.08 21.84 0.24 -40.52 16 25 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 28 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 29 H 0.05 1.54 7.69 -2.39 -0.02 1.52 16 30 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.14 5.18 6.43 -2.91 -0.02 5.16 16 33 H 0.13 5.07 6.16 -2.91 -0.02 5.05 16 34 H 0.13 4.37 6.16 -2.91 -0.02 4.35 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16 37 H 0.07 1.23 7.24 -2.39 -0.02 1.21 16 38 H 0.09 1.38 7.42 -2.39 -0.02 1.36 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.40 3.74 9.12 -74.06 -0.68 3.07 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.07 7.91 -2.39 -0.02 1.05 16 44 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 45 H 0.12 6.03 7.15 -2.91 -0.02 6.01 16 46 H 0.28 13.69 8.30 -92.70 -0.77 12.92 16 Total: -1.00 -75.85 381.91 -1.99 -77.84 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.35 Total: 35.23 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 5.40 Total: -39.76 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -6.88 Total: -86.21 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -2.89 Total: -28.82 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -75.85 -1.99 -77.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243637076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.230 kcal (2) G-P(sol) polarization free energy of solvation -75.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds