Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81394 * 103.00075 * 2 1 4 4 H 1.09002 * 110.01732 * 54.93318 * 3 2 1 5 5 C 1.53875 * 110.03261 * 293.54497 * 3 2 1 6 6 C 1.54263 * 106.60094 * 240.66708 * 5 3 2 7 7 C 1.54892 * 104.19316 * 336.38619 * 6 5 3 8 8 H 1.08997 * 110.75539 * 279.62488 * 7 6 5 9 9 N 1.46498 * 110.75083 * 156.26016 * 7 6 5 10 10 C 1.46508 * 120.00014 * 301.45125 * 9 7 6 11 11 C 1.34777 * 120.00327 * 121.45582 * 9 7 6 12 12 O 1.21350 * 119.99825 * 7.77925 * 11 9 7 13 13 C 1.49446 * 120.00355 * 187.77615 * 11 9 7 14 14 O 1.21350 * 119.99814 * 6.63680 * 13 11 9 15 15 N 1.34781 * 120.00206 * 186.63394 * 13 11 9 16 16 C 1.46501 * 120.00094 * 174.95477 * 15 13 11 17 17 C 1.52998 * 109.47110 * 185.16788 * 16 15 13 18 18 C 1.50697 * 115.54786 * 62.79123 * 17 16 15 19 19 H 1.07993 * 120.00465 * 272.03331 * 18 17 16 20 20 C 1.37887 * 119.99792 * 92.03907 * 18 17 16 21 21 N 1.31514 * 119.99550 * 182.61019 * 20 18 17 22 22 Si 1.86796 * 119.99952 * 2.61456 * 20 18 17 23 23 H 1.48500 * 109.47384 * 93.59119 * 22 20 18 24 24 H 1.48505 * 109.47003 * 213.58976 * 22 20 18 25 25 H 1.48500 * 109.47112 * 333.58965 * 22 20 18 26 26 C 1.52995 * 117.49583 * 277.12303 * 17 16 15 27 27 C 1.52999 * 117.49736 * 208.46058 * 17 16 15 28 28 C 1.54263 * 110.07707 * 176.35422 * 3 2 1 29 29 H 1.09003 * 109.46872 * 299.99973 * 1 2 3 30 30 H 1.08994 * 109.47106 * 60.00082 * 1 2 3 31 31 H 1.09006 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.09007 * 110.03173 * 121.38228 * 5 3 2 33 33 H 1.09003 * 110.03436 * 359.95404 * 5 3 2 34 34 H 1.08997 * 110.48648 * 95.06728 * 6 5 3 35 35 H 1.09000 * 110.48643 * 217.71156 * 6 5 3 36 36 H 1.09000 * 109.46854 * 95.74310 * 10 9 7 37 37 H 1.09002 * 109.47079 * 215.74651 * 10 9 7 38 38 H 1.09001 * 109.46905 * 335.74384 * 10 9 7 39 39 H 0.96999 * 119.99400 * 354.95599 * 15 13 11 40 40 H 1.09005 * 109.47026 * 305.16831 * 16 15 13 41 41 H 1.08997 * 109.46809 * 65.16506 * 16 15 13 42 42 H 0.97000 * 119.99317 * 179.97438 * 21 20 18 43 43 H 1.08998 * 117.50241 * 359.97438 * 26 17 16 44 44 H 1.09003 * 117.49694 * 145.02689 * 26 17 16 45 45 H 1.08998 * 117.50096 * 214.97551 * 27 17 16 46 46 H 1.08998 * 117.50276 * 359.97438 * 27 17 16 47 47 H 1.08992 * 110.49013 * 261.59657 * 28 3 2 48 48 H 1.09005 * 110.48454 * 24.10572 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7326 2.2634 0.8383 5 6 1.7779 2.4110 -1.3253 6 6 3.0516 2.9701 -1.9923 7 6 4.0357 3.1807 -0.8149 8 1 3.8168 4.1107 -0.2901 9 7 5.4221 3.1637 -1.2879 10 6 5.9436 1.9860 -1.9861 11 6 6.2180 4.2315 -1.0807 12 8 5.8352 5.1472 -0.3825 13 6 7.5720 4.2877 -1.7107 14 8 7.9084 3.4327 -2.5034 15 7 8.4196 5.2881 -1.3985 16 6 9.7850 5.2839 -1.9294 17 6 10.5707 6.4495 -1.3253 18 6 10.7554 6.4033 0.1696 19 1 10.0093 6.8358 0.8196 20 6 11.8773 5.8089 0.7075 21 7 12.0139 5.7228 2.0127 22 14 13.2028 5.1260 -0.4176 23 1 14.2497 6.1572 -0.6320 24 1 13.8122 3.9247 0.2077 25 1 12.6006 4.7531 -1.7227 26 6 10.4048 7.8250 -1.9745 27 6 11.7076 7.0428 -2.1597 28 6 3.7501 1.9581 0.0921 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.0730 3.2192 -1.1302 33 1 1.3179 1.6610 -1.9688 34 1 3.4566 2.2509 -2.7041 35 1 2.8388 3.9184 -2.4859 36 1 5.8642 2.1371 -3.0626 37 1 6.9890 1.8369 -1.7161 38 1 5.3653 1.1078 -1.6988 39 1 8.1254 6.0108 -0.8222 40 1 10.2726 4.3441 -1.6705 41 1 9.7534 5.3902 -3.0138 42 1 12.8029 5.3043 2.3911 43 1 9.7364 7.8994 -2.8322 44 1 10.4299 8.6965 -1.3204 45 1 12.5891 7.4002 -1.6274 46 1 11.8962 6.6025 -3.1388 47 1 4.0471 2.1678 1.1196 48 1 4.2679 1.0745 -0.2809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = -39.670099 kcal Electronic energy + Delta-G solvation = -27653.525169 eV Core-core repulsion = 23835.762462 eV Total energy + Delta-G solvation = -3817.762707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68272 -38.95239 -37.75679 -37.11395 -35.01448 -33.39705 -32.14221 -29.68335 -29.20128 -28.47148 -27.42184 -26.68944 -25.48663 -23.44533 -21.84817 -20.99927 -20.47716 -19.68558 -19.11040 -17.69368 -17.38044 -16.48767 -16.34780 -16.03652 -15.91996 -15.40063 -15.06356 -14.88541 -14.27748 -14.12429 -14.04914 -13.89265 -13.76038 -13.45601 -13.26999 -12.97567 -12.76437 -12.61363 -12.56355 -12.27817 -12.11935 -12.06465 -11.68957 -11.57228 -11.32283 -11.23175 -11.17770 -10.95692 -10.85005 -10.48836 -10.24577 -10.14617 -9.65331 -9.23858 -9.16885 -8.82519 -8.68579 -8.58133 -8.46517 -8.03918 -6.17081 -4.22310 1.29589 1.70301 2.18436 2.49421 3.25213 3.36834 3.40436 3.48386 3.70699 4.08408 4.24327 4.37033 4.48969 4.66982 4.73001 4.75579 4.90235 4.94129 4.96754 4.97794 5.08943 5.11876 5.13216 5.23506 5.29235 5.46018 5.58007 5.60303 5.62208 5.70975 5.83074 5.83561 5.95464 5.99967 6.03192 6.11937 6.33590 6.34763 6.38344 6.64245 6.81184 6.92323 7.03528 7.08143 7.63963 7.66831 8.04489 8.38565 8.42723 8.84538 9.44862 10.94159 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.002299 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.937622 B =12175.295461 C =12546.183263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.257 6.257 3 C -0.055 4.055 4 H 0.093 0.907 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.138 3.862 8 H 0.113 0.887 9 N -0.586 5.586 10 C 0.080 3.920 11 C 0.511 3.489 12 O -0.517 6.517 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.666 5.666 16 C 0.156 3.844 17 C -0.018 4.018 18 C -0.492 4.492 19 H 0.080 0.920 20 C 0.078 3.922 21 N -0.893 5.893 22 Si 0.882 3.118 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.256 1.256 26 C -0.180 4.180 27 C -0.190 4.190 28 C -0.114 4.114 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.266 0.734 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.328 -8.744 -7.771 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.030 6.030 3 C -0.184 4.184 4 H 0.111 0.889 5 C -0.158 4.158 6 C -0.169 4.169 7 C 0.034 3.966 8 H 0.131 0.869 9 N -0.319 5.319 10 C -0.062 4.062 11 C 0.294 3.706 12 O -0.392 6.392 13 C 0.278 3.722 14 O -0.413 6.413 15 N -0.316 5.316 16 C 0.033 3.967 17 C -0.019 4.019 18 C -0.529 4.529 19 H 0.098 0.902 20 C -0.125 4.125 21 N -0.529 5.529 22 Si 0.710 3.290 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.180 1.180 26 C -0.217 4.217 27 C -0.228 4.228 28 C -0.154 4.154 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.253 0.747 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.471 -9.812 -7.761 23.991 hybrid contribution -0.153 0.861 -0.133 0.885 sum -20.625 -8.951 -7.894 23.829 Atomic orbital electron populations 1.23393 0.94498 1.06372 1.04932 1.87000 1.07104 1.11027 1.97838 1.23735 0.99890 0.93581 1.01203 0.88904 1.22507 0.98015 1.00425 0.94813 1.22688 0.94538 1.01887 0.97820 1.22134 0.80007 0.99879 0.94623 0.86910 1.47551 1.11161 1.16425 1.56796 1.22070 1.00942 0.86036 0.97112 1.20473 0.86376 0.82574 0.81203 1.90747 1.74674 1.37216 1.36598 1.19869 0.85679 0.83202 0.83402 1.90692 1.77138 1.38728 1.34701 1.45719 1.12538 1.24302 1.49000 1.21266 0.79708 1.00332 0.95413 1.19627 0.97182 0.89856 0.95263 1.20197 1.07388 1.38700 0.86650 0.90184 1.25021 0.98010 0.94629 0.94845 1.69895 1.28809 1.43529 1.10656 0.86833 0.82045 0.78400 0.81757 1.20591 1.22229 1.18008 1.22929 0.99366 0.97254 1.02134 1.22925 0.93419 1.06092 1.00336 1.22574 0.92257 0.99025 1.01507 0.90547 0.90467 0.88212 0.90929 0.90334 0.90348 0.90707 0.91839 0.89090 0.91510 0.74738 0.91178 0.93164 0.92450 0.90798 0.89216 0.89167 0.90516 0.89791 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.58 101.05 1.07 0.39 16 2 S -0.26 -2.17 21.34 -107.50 -2.29 -4.46 16 3 C -0.05 -0.42 3.42 -25.61 -0.09 -0.51 16 4 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.12 -0.80 6.30 -25.61 -0.16 -0.96 16 6 C -0.13 -1.08 6.40 -25.07 -0.16 -1.24 16 7 C 0.14 1.46 3.30 -65.94 -0.22 1.24 16 8 H 0.11 1.32 7.03 -51.93 -0.36 0.96 16 9 N -0.59 -7.64 2.89 -172.16 -0.50 -8.13 16 10 C 0.08 0.94 7.98 59.85 0.48 1.41 16 11 C 0.51 8.38 7.71 -11.59 -0.09 8.29 16 12 O -0.52 -9.46 15.90 5.50 0.09 -9.37 16 13 C 0.50 9.00 7.66 -11.59 -0.09 8.91 16 14 O -0.53 -9.98 13.49 5.50 0.07 -9.90 16 15 N -0.67 -12.76 5.42 -60.73 -0.33 -13.09 16 16 C 0.16 3.17 5.40 -4.04 -0.02 3.15 16 17 C -0.02 -0.39 0.88 -155.67 -0.14 -0.53 16 18 C -0.49 -12.98 9.25 -34.44 -0.32 -13.30 16 19 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 20 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 21 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 22 Si 0.88 21.10 24.86 -169.99 -4.23 16.87 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.26 -5.77 6.12 56.52 0.35 -5.42 16 26 C -0.18 -3.42 9.96 -26.69 -0.27 -3.69 16 27 C -0.19 -3.83 7.08 -26.69 -0.19 -4.01 16 28 C -0.11 -1.07 5.90 -25.08 -0.15 -1.22 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.36 7.75 -51.93 -0.40 -0.04 16 31 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.51 7.21 -51.93 -0.37 0.14 16 34 H 0.08 0.66 7.26 -51.93 -0.38 0.28 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 37 H 0.09 1.24 6.20 -51.93 -0.32 0.92 16 38 H 0.07 0.63 6.10 -51.93 -0.32 0.31 16 39 H 0.42 8.04 7.88 -40.82 -0.32 7.72 16 40 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 41 H 0.05 0.95 8.11 -51.93 -0.42 0.52 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 45 H 0.09 1.91 6.46 -51.93 -0.34 1.58 16 46 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.85 5.78 -51.93 -0.30 0.55 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -30.27 390.84 -8.74 -39.01 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.78 Total: 8.89 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.44 Total: 0.00 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.05 Total: -46.92 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.16 Total: -19.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.23 Total: 16.87 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.29 Total: -4.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.27 -8.74 -39.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.662 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds