Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99993 * 2 1 4 4 H 1.09000 * 110.01275 * 54.29839 * 3 2 1 5 5 C 1.54261 * 110.07447 * 292.88067 * 3 2 1 6 6 C 1.54891 * 104.19760 * 217.08373 * 5 3 2 7 7 C 1.54885 * 102.74701 * 37.94349 * 6 5 3 8 8 H 1.09002 * 110.48721 * 80.73940 * 7 6 5 9 9 N 1.46508 * 110.48402 * 203.37925 * 7 6 5 10 10 C 1.46494 * 119.99659 * 54.77596 * 9 7 6 11 11 C 1.34771 * 119.99846 * 234.77312 * 9 7 6 12 12 O 1.21347 * 120.00284 * 358.33571 * 11 9 7 13 13 C 1.49452 * 119.99797 * 178.34015 * 11 9 7 14 14 O 1.21350 * 119.99794 * 6.48243 * 13 11 9 15 15 N 1.34777 * 119.99938 * 186.49329 * 13 11 9 16 16 C 1.46502 * 119.99934 * 174.94085 * 15 13 11 17 17 C 1.52998 * 109.46863 * 185.34508 * 16 15 13 18 18 C 1.50697 * 115.55164 * 55.59026 * 17 16 15 19 19 H 1.07998 * 120.00053 * 265.86869 * 18 17 16 20 20 C 1.37874 * 120.00020 * 85.86977 * 18 17 16 21 21 N 1.31514 * 119.99919 * 177.82630 * 20 18 17 22 22 Si 1.86807 * 120.00166 * 357.82537 * 20 18 17 23 23 H 1.48499 * 109.46938 * 90.81945 * 22 20 18 24 24 H 1.48493 * 109.47109 * 210.82118 * 22 20 18 25 25 H 1.48493 * 109.46887 * 330.82008 * 22 20 18 26 26 C 1.53004 * 117.49855 * 269.91822 * 17 16 15 27 27 C 1.53004 * 117.49577 * 201.26111 * 17 16 15 28 28 C 1.53878 * 110.03127 * 175.68757 * 3 2 1 29 29 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47324 * 299.99766 * 1 2 3 31 31 H 1.09007 * 109.47101 * 60.00065 * 1 2 3 32 32 H 1.09002 * 110.48770 * 335.76417 * 5 3 2 33 33 H 1.09003 * 110.48796 * 98.40172 * 5 3 2 34 34 H 1.08995 * 110.75200 * 279.62556 * 6 5 3 35 35 H 1.08999 * 110.75536 * 156.25909 * 6 5 3 36 36 H 1.09004 * 109.47320 * 97.44685 * 10 9 7 37 37 H 1.09004 * 109.47025 * 217.44755 * 10 9 7 38 38 H 1.08999 * 109.47509 * 337.44626 * 10 9 7 39 39 H 0.96998 * 120.00047 * 354.93283 * 15 13 11 40 40 H 1.08998 * 109.47097 * 305.34610 * 16 15 13 41 41 H 1.09002 * 109.47308 * 65.34252 * 16 15 13 42 42 H 0.97008 * 120.00279 * 179.97438 * 21 20 18 43 43 H 1.08997 * 117.49810 * 0.02562 * 26 17 16 44 44 H 1.08991 * 117.49809 * 145.02507 * 26 17 16 45 45 H 1.09001 * 117.49844 * 214.97886 * 27 17 16 46 46 H 1.08999 * 117.50248 * 359.97184 * 27 17 16 47 47 H 1.08993 * 110.03278 * 238.61368 * 28 3 2 48 48 H 1.09003 * 110.03596 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7236 2.2654 0.8317 5 6 1.7922 2.4101 -1.3349 6 6 2.9081 3.4411 -1.6369 7 6 4.1878 2.7079 -1.1641 8 1 4.5270 2.0039 -1.9240 9 7 5.2446 3.6725 -0.8489 10 6 4.9895 4.7514 0.1087 11 6 6.4512 3.5672 -1.4398 12 8 6.6722 2.6559 -2.2100 13 6 7.5172 4.5728 -1.1465 14 8 7.3387 5.4139 -0.2902 15 7 8.6766 4.5455 -1.8332 16 6 9.6762 5.5961 -1.6249 17 6 10.8287 5.4065 -2.6130 18 6 10.4369 5.3597 -4.0674 19 1 10.2583 4.4093 -4.5482 20 6 10.3065 6.5301 -4.7843 21 7 10.0065 6.4875 -6.0640 22 14 10.5560 8.1766 -3.9379 23 1 11.9810 8.5794 -4.0489 24 1 9.6999 9.2017 -4.5870 25 1 10.1855 8.0576 -2.5049 26 6 12.0032 4.5320 -2.1692 27 6 12.1719 6.0505 -2.2636 28 6 3.7453 1.9568 0.1087 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7444 1.6581 -2.1224 33 1 0.8301 2.9105 -1.2251 34 1 2.7535 4.3561 -1.0651 35 1 2.9576 3.6551 -2.7045 36 1 5.3705 4.4648 1.0890 37 1 5.4915 5.6596 -0.2249 38 1 3.9167 4.9326 0.1747 39 1 8.8493 3.8302 -2.4652 40 1 9.2169 6.5715 -1.7851 41 1 10.0580 5.5374 -0.6056 42 1 9.9143 7.3110 -6.5684 43 1 11.9545 4.0915 -1.1735 44 1 12.4926 3.9232 -2.9293 45 1 12.7724 6.4400 -3.0857 46 1 12.2344 6.6096 -1.3300 47 1 3.9860 2.5467 0.9930 48 1 4.2394 0.9866 0.1610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = -36.840470 kcal Electronic energy + Delta-G solvation = -27733.891166 eV Core-core repulsion = 23916.251161 eV Total energy + Delta-G solvation = -3817.640005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67993 -38.94568 -37.72336 -37.08969 -34.97641 -33.36740 -32.16025 -29.65027 -29.19092 -28.46173 -27.44202 -26.65757 -25.47097 -23.40158 -21.74186 -21.13344 -20.40522 -19.68009 -19.07879 -17.63431 -17.23597 -16.80354 -16.33167 -15.97960 -15.76671 -15.27778 -15.03285 -14.97834 -14.33992 -14.10477 -14.04102 -13.88708 -13.70536 -13.52977 -13.18535 -12.97031 -12.81869 -12.57597 -12.46697 -12.29572 -12.22415 -12.09435 -11.73858 -11.57049 -11.20383 -11.19503 -11.14749 -10.82363 -10.73423 -10.56527 -10.24236 -10.15050 -9.72296 -9.25988 -9.10383 -8.79196 -8.69204 -8.62276 -8.39458 -8.01606 -6.17596 -4.22896 1.33124 1.74304 2.19621 2.51755 3.25177 3.35221 3.37397 3.50517 3.75364 4.09680 4.13246 4.36168 4.66604 4.69628 4.74725 4.78695 4.90542 4.96083 4.97355 5.00907 5.05153 5.10056 5.12220 5.24968 5.31570 5.44897 5.59447 5.60873 5.62934 5.75477 5.80686 5.89304 5.94172 6.01838 6.05512 6.13003 6.36509 6.37097 6.40633 6.66116 6.82898 6.94553 7.04682 7.10701 7.63768 7.70837 8.08429 8.38321 8.45337 8.84154 9.44554 10.93570 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002347 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.174540 B =11929.225845 C =12139.809173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.257 6.257 3 C -0.053 4.053 4 H 0.091 0.909 5 C -0.118 4.118 6 C -0.133 4.133 7 C 0.136 3.864 8 H 0.113 0.887 9 N -0.586 5.586 10 C 0.070 3.930 11 C 0.509 3.491 12 O -0.516 6.516 13 C 0.499 3.501 14 O -0.537 6.537 15 N -0.662 5.662 16 C 0.150 3.850 17 C -0.020 4.020 18 C -0.492 4.492 19 H 0.080 0.920 20 C 0.081 3.919 21 N -0.892 5.892 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.256 1.256 26 C -0.177 4.177 27 C -0.190 4.190 28 C -0.112 4.112 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.418 0.582 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.266 0.734 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.656 -7.211 13.709 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.030 6.030 3 C -0.183 4.183 4 H 0.109 0.891 5 C -0.158 4.158 6 C -0.172 4.172 7 C 0.032 3.968 8 H 0.131 0.869 9 N -0.320 5.320 10 C -0.072 4.072 11 C 0.292 3.708 12 O -0.390 6.390 13 C 0.279 3.721 14 O -0.416 6.416 15 N -0.312 5.312 16 C 0.027 3.973 17 C -0.021 4.021 18 C -0.529 4.529 19 H 0.098 0.902 20 C -0.123 4.123 21 N -0.528 5.528 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.181 1.181 26 C -0.214 4.214 27 C -0.228 4.228 28 C -0.152 4.152 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.255 0.745 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.000 -7.881 13.717 23.222 hybrid contribution -0.718 1.701 0.113 1.850 sum -17.718 -6.180 13.831 23.311 Atomic orbital electron populations 1.23373 0.94637 1.06371 1.04857 1.87088 1.07005 1.11083 1.97839 1.23757 0.99757 0.93479 1.01270 0.89103 1.22740 0.98586 0.98667 0.95798 1.22893 0.93395 0.98411 1.02516 1.22019 0.86683 0.90856 0.97192 0.86874 1.47643 1.11262 1.29819 1.43272 1.22268 1.01273 0.91321 0.92351 1.20436 0.83487 0.85938 0.80936 1.90760 1.80185 1.33685 1.34394 1.19883 0.83794 0.85324 0.83106 1.90633 1.79275 1.38997 1.32728 1.45726 1.15480 1.28686 1.41290 1.21353 0.88808 0.90028 0.97080 1.19606 0.85562 1.01046 0.95907 1.20191 1.47806 0.94919 0.89989 0.90184 1.24978 0.93738 0.99119 0.94447 1.69893 1.47397 1.28287 1.07267 0.86899 0.78217 0.83583 0.80776 1.20292 1.22017 1.18080 1.22872 1.05276 0.92750 1.00519 1.22954 1.02844 0.95551 1.01483 1.22327 0.92034 1.01704 0.99117 0.88251 0.90659 0.90423 0.89712 0.90936 0.90316 0.90175 0.92301 0.87757 0.91746 0.74493 0.91009 0.93123 0.92452 0.90777 0.89249 0.89045 0.90709 0.89762 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.62 101.05 1.07 0.37 16 2 S -0.26 -2.27 21.34 -107.50 -2.29 -4.56 16 3 C -0.05 -0.41 3.42 -25.61 -0.09 -0.50 16 4 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.12 -0.85 6.24 -25.07 -0.16 -1.01 16 6 C -0.13 -1.16 6.40 -24.74 -0.16 -1.32 16 7 C 0.14 1.51 3.26 -66.27 -0.22 1.30 16 8 H 0.11 1.48 6.99 -51.93 -0.36 1.12 16 9 N -0.59 -7.74 2.86 -172.54 -0.49 -8.23 16 10 C 0.07 0.79 8.15 59.84 0.49 1.27 16 11 C 0.51 8.56 7.74 -11.59 -0.09 8.47 16 12 O -0.52 -9.79 15.86 5.50 0.09 -9.71 16 13 C 0.50 9.13 7.75 -11.58 -0.09 9.04 16 14 O -0.54 -10.02 13.23 5.50 0.07 -9.95 16 15 N -0.66 -12.93 5.35 -60.73 -0.32 -13.26 16 16 C 0.15 3.07 5.31 -4.04 -0.02 3.05 16 17 C -0.02 -0.43 0.94 -155.66 -0.15 -0.58 16 18 C -0.49 -12.90 8.85 -34.44 -0.30 -13.21 16 19 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 22 Si 0.88 20.97 25.06 -169.99 -4.26 16.71 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.26 -5.79 5.45 56.52 0.31 -5.48 16 26 C -0.18 -3.37 9.93 -26.69 -0.27 -3.64 16 27 C -0.19 -3.81 7.73 -26.69 -0.21 -4.02 16 28 C -0.11 -1.05 6.11 -25.61 -0.16 -1.20 16 29 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.08 0.66 7.81 -51.93 -0.41 0.25 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.63 6.12 -51.93 -0.32 0.31 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 37 H 0.10 1.40 5.62 -51.93 -0.29 1.11 16 38 H 0.06 0.54 6.11 -51.93 -0.32 0.22 16 39 H 0.42 8.34 7.65 -40.82 -0.31 8.03 16 40 H 0.07 1.58 6.16 -51.93 -0.32 1.26 16 41 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 45 H 0.09 1.92 7.42 -51.93 -0.39 1.54 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.08 0.74 7.15 -51.93 -0.37 0.37 16 48 H 0.08 0.86 7.60 -51.93 -0.39 0.47 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -30.16 389.77 -8.78 -38.94 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.78 Total: 9.60 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.43 Total: 0.14 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.04 Total: -47.05 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.65 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.26 Total: 16.71 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.29 Total: -4.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.16 -8.78 -38.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.095 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds