Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99993 * 2 1 4 4 H 1.09000 * 110.01275 * 54.29839 * 3 2 1 5 5 C 1.54261 * 110.07447 * 292.88067 * 3 2 1 6 6 C 1.54891 * 104.19760 * 217.08373 * 5 3 2 7 7 C 1.54885 * 102.74701 * 37.94349 * 6 5 3 8 8 H 1.09002 * 110.48721 * 80.73940 * 7 6 5 9 9 N 1.46508 * 110.48402 * 203.37925 * 7 6 5 10 10 C 1.46494 * 119.99659 * 54.77596 * 9 7 6 11 11 C 1.34771 * 119.99846 * 234.77312 * 9 7 6 12 12 O 1.21347 * 120.00284 * 358.33571 * 11 9 7 13 13 C 1.49452 * 119.99797 * 178.34015 * 11 9 7 14 14 O 1.21350 * 119.99794 * 6.48243 * 13 11 9 15 15 N 1.34777 * 119.99938 * 186.49329 * 13 11 9 16 16 C 1.46502 * 119.99934 * 174.94085 * 15 13 11 17 17 C 1.52998 * 109.46863 * 185.34508 * 16 15 13 18 18 C 1.50697 * 115.55164 * 55.59026 * 17 16 15 19 19 H 1.07998 * 120.00053 * 265.86869 * 18 17 16 20 20 C 1.37874 * 120.00020 * 85.86977 * 18 17 16 21 21 N 1.31514 * 119.99919 * 177.82630 * 20 18 17 22 22 Si 1.86807 * 120.00166 * 357.82537 * 20 18 17 23 23 H 1.48499 * 109.46938 * 90.81945 * 22 20 18 24 24 H 1.48493 * 109.47109 * 210.82118 * 22 20 18 25 25 H 1.48493 * 109.46887 * 330.82008 * 22 20 18 26 26 C 1.53004 * 117.49855 * 269.91822 * 17 16 15 27 27 C 1.53004 * 117.49577 * 201.26111 * 17 16 15 28 28 C 1.53878 * 110.03127 * 175.68757 * 3 2 1 29 29 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47324 * 299.99766 * 1 2 3 31 31 H 1.09007 * 109.47101 * 60.00065 * 1 2 3 32 32 H 1.09002 * 110.48770 * 335.76417 * 5 3 2 33 33 H 1.09003 * 110.48796 * 98.40172 * 5 3 2 34 34 H 1.08995 * 110.75200 * 279.62556 * 6 5 3 35 35 H 1.08999 * 110.75536 * 156.25909 * 6 5 3 36 36 H 1.09004 * 109.47320 * 97.44685 * 10 9 7 37 37 H 1.09004 * 109.47025 * 217.44755 * 10 9 7 38 38 H 1.08999 * 109.47509 * 337.44626 * 10 9 7 39 39 H 0.96998 * 120.00047 * 354.93283 * 15 13 11 40 40 H 1.08998 * 109.47097 * 305.34610 * 16 15 13 41 41 H 1.09002 * 109.47308 * 65.34252 * 16 15 13 42 42 H 0.97008 * 120.00279 * 179.97438 * 21 20 18 43 43 H 1.08997 * 117.49810 * 0.02562 * 26 17 16 44 44 H 1.08991 * 117.49809 * 145.02507 * 26 17 16 45 45 H 1.09001 * 117.49844 * 214.97886 * 27 17 16 46 46 H 1.08999 * 117.50248 * 359.97184 * 27 17 16 47 47 H 1.08993 * 110.03278 * 238.61368 * 28 3 2 48 48 H 1.09003 * 110.03596 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7236 2.2654 0.8317 5 6 1.7922 2.4101 -1.3349 6 6 2.9081 3.4411 -1.6369 7 6 4.1878 2.7079 -1.1641 8 1 4.5270 2.0039 -1.9240 9 7 5.2446 3.6725 -0.8489 10 6 4.9895 4.7514 0.1087 11 6 6.4512 3.5672 -1.4398 12 8 6.6722 2.6559 -2.2100 13 6 7.5172 4.5728 -1.1465 14 8 7.3387 5.4139 -0.2902 15 7 8.6766 4.5455 -1.8332 16 6 9.6762 5.5961 -1.6249 17 6 10.8287 5.4065 -2.6130 18 6 10.4369 5.3597 -4.0674 19 1 10.2583 4.4093 -4.5482 20 6 10.3065 6.5301 -4.7843 21 7 10.0065 6.4875 -6.0640 22 14 10.5560 8.1766 -3.9379 23 1 11.9810 8.5794 -4.0489 24 1 9.6999 9.2017 -4.5870 25 1 10.1855 8.0576 -2.5049 26 6 12.0032 4.5320 -2.1692 27 6 12.1719 6.0505 -2.2636 28 6 3.7453 1.9568 0.1087 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7444 1.6581 -2.1224 33 1 0.8301 2.9105 -1.2251 34 1 2.7535 4.3561 -1.0651 35 1 2.9576 3.6551 -2.7045 36 1 5.3705 4.4648 1.0890 37 1 5.4915 5.6596 -0.2249 38 1 3.9167 4.9326 0.1747 39 1 8.8493 3.8302 -2.4652 40 1 9.2169 6.5715 -1.7851 41 1 10.0580 5.5374 -0.6056 42 1 9.9143 7.3110 -6.5684 43 1 11.9545 4.0915 -1.1735 44 1 12.4926 3.9232 -2.9293 45 1 12.7724 6.4400 -3.0857 46 1 12.2344 6.6096 -1.3300 47 1 3.9860 2.5467 0.9930 48 1 4.2394 0.9866 0.1610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261227284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = -55.925598 kcal Electronic energy + Delta-G solvation = -27734.718759 eV Core-core repulsion = 23916.251161 eV Total energy + Delta-G solvation = -3818.467598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95520 -40.16277 -38.92673 -38.66771 -36.10047 -34.81805 -34.22984 -30.25416 -29.90096 -29.27894 -28.80838 -27.92062 -27.29090 -24.68865 -23.31356 -21.78194 -21.60011 -21.19611 -20.42680 -19.02678 -18.41574 -18.17173 -17.50884 -17.29396 -16.99090 -16.81679 -16.34375 -15.93656 -15.70155 -15.41529 -15.00220 -14.78947 -14.77538 -14.51388 -14.32164 -14.23562 -14.14860 -14.02600 -13.83057 -13.47139 -13.09654 -13.05783 -12.80942 -12.60799 -12.56643 -12.40387 -12.21645 -12.16837 -11.98669 -11.86215 -11.68416 -11.59667 -11.01088 -10.74285 -10.70181 -10.55832 -10.29854 -10.06350 -9.77806 -8.67997 -8.29477 -6.37650 0.34849 0.75897 1.26988 1.35900 1.39615 1.49774 1.66448 2.12189 2.36486 2.47615 3.04433 3.16335 3.36673 3.40470 3.48596 3.97180 3.99749 4.15460 4.17896 4.25755 4.32663 4.32929 4.34316 4.38351 4.39515 4.39840 4.52104 4.53796 4.67823 4.73850 4.77277 4.88340 4.89350 4.91295 4.96355 5.06582 5.08432 5.11072 5.21504 5.25485 5.32801 5.44853 5.50021 5.68446 5.91155 6.27599 6.31424 6.68975 6.71946 6.96462 7.32954 8.85534 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002347 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.174540 B =11929.225845 C =12139.809173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.319 6.319 3 C -0.038 4.038 4 H 0.112 0.888 5 C -0.110 4.110 6 C -0.127 4.127 7 C 0.129 3.871 8 H 0.086 0.914 9 N -0.573 5.573 10 C 0.068 3.932 11 C 0.504 3.496 12 O -0.549 6.549 13 C 0.499 3.501 14 O -0.538 6.538 15 N -0.672 5.672 16 C 0.159 3.841 17 C -0.047 4.047 18 C -0.482 4.482 19 H 0.036 0.964 20 C 0.023 3.977 21 N -0.946 5.946 22 Si 0.933 3.067 23 H -0.266 1.266 24 H -0.302 1.302 25 H -0.231 1.231 26 C -0.158 4.158 27 C -0.182 4.182 28 C -0.106 4.106 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.413 0.587 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.264 0.736 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 -6.147 16.931 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.167 4.167 4 H 0.130 0.870 5 C -0.149 4.149 6 C -0.166 4.166 7 C 0.026 3.974 8 H 0.104 0.896 9 N -0.305 5.305 10 C -0.073 4.073 11 C 0.286 3.714 12 O -0.427 6.427 13 C 0.280 3.720 14 O -0.417 6.417 15 N -0.322 5.322 16 C 0.036 3.964 17 C -0.048 4.048 18 C -0.520 4.520 19 H 0.054 0.946 20 C -0.175 4.175 21 N -0.585 5.585 22 Si 0.758 3.242 23 H -0.191 1.191 24 H -0.230 1.230 25 H -0.154 1.154 26 C -0.195 4.195 27 C -0.220 4.220 28 C -0.145 4.145 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.249 0.751 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.520 -6.815 16.997 26.045 hybrid contribution -0.320 1.246 -0.891 1.565 sum -18.840 -5.569 16.106 25.404 Atomic orbital electron populations 1.23404 0.91185 1.07188 1.05986 1.87356 1.10897 1.12929 1.97994 1.23695 0.98352 0.92416 1.02275 0.86972 1.22702 0.99059 0.97982 0.95177 1.22875 0.92315 0.99217 1.02172 1.22183 0.86890 0.90613 0.97752 0.89628 1.47780 1.10315 1.30151 1.42244 1.22373 1.03519 0.89616 0.91812 1.20277 0.84375 0.85426 0.81298 1.90747 1.80905 1.34878 1.36208 1.20129 0.83711 0.85477 0.82728 1.90632 1.79301 1.39128 1.32684 1.45780 1.16118 1.28564 1.41713 1.21190 0.88136 0.89387 0.97691 1.19481 0.87127 1.04646 0.93590 1.20323 1.46222 0.92939 0.92471 0.94557 1.25810 0.93889 1.02993 0.94846 1.70048 1.50208 1.29086 1.09198 0.85989 0.78457 0.78766 0.80944 1.19093 1.22993 1.15413 1.22909 1.02338 0.92508 1.01728 1.23019 1.00215 0.96419 1.02342 1.22243 0.93354 1.00629 0.98270 0.87664 0.89297 0.89431 0.90607 0.88341 0.88624 0.91092 0.91414 0.89723 0.88111 0.75125 0.92689 0.90650 0.92661 0.87630 0.90108 0.90353 0.87534 0.88635 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.62 113.37 1.20 0.22 16 2 S -0.32 -5.25 21.34 -56.49 -1.21 -6.45 16 3 C -0.04 -0.50 3.42 31.32 0.11 -0.40 16 4 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.11 -1.30 6.24 31.67 0.20 -1.10 16 6 C -0.13 -1.96 6.40 31.88 0.20 -1.76 16 7 C 0.13 2.78 3.26 46.06 0.15 2.93 16 8 H 0.09 2.35 6.99 -2.39 -0.02 2.34 16 9 N -0.57 -14.69 2.86 -818.15 -2.34 -17.03 16 10 C 0.07 1.37 8.15 127.77 1.04 2.41 16 11 C 0.50 17.18 7.74 87.27 0.68 17.86 16 12 O -0.55 -21.84 15.86 -3.24 -0.05 -21.89 16 13 C 0.50 18.15 7.75 87.27 0.68 18.82 16 14 O -0.54 -19.41 13.23 -3.25 -0.04 -19.45 16 15 N -0.67 -26.32 5.35 -464.41 -2.48 -28.80 16 16 C 0.16 6.24 5.31 86.38 0.46 6.70 16 17 C -0.05 -2.01 0.94 -52.93 -0.05 -2.06 16 18 C -0.48 -26.01 8.85 25.60 0.23 -25.78 16 19 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 20 C 0.02 1.27 5.47 84.65 0.46 1.74 16 21 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 22 Si 0.93 43.15 25.06 68.60 1.72 44.87 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.23 -9.66 5.45 99.48 0.54 -9.11 16 26 C -0.16 -5.68 9.93 30.62 0.30 -5.38 16 27 C -0.18 -6.78 7.73 30.62 0.24 -6.54 16 28 C -0.11 -1.83 6.11 31.32 0.19 -1.64 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.58 8.14 -2.40 -0.02 0.56 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 1.07 7.81 -2.39 -0.02 1.05 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 1.18 6.12 -2.39 -0.01 1.16 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.29 8.13 -2.38 -0.02 1.27 16 37 H 0.08 2.13 5.62 -2.38 -0.01 2.12 16 38 H 0.10 1.31 6.11 -2.39 -0.01 1.29 16 39 H 0.41 17.05 7.65 -92.71 -0.71 16.34 16 40 H 0.05 2.33 6.16 -2.39 -0.01 2.31 16 41 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 42 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 43 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.08 3.14 7.42 -2.39 -0.02 3.12 16 46 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 47 H 0.10 1.44 7.15 -2.39 -0.02 1.42 16 48 H 0.06 1.37 7.60 -2.39 -0.02 1.35 16 Total: -1.00 -68.94 389.77 2.07 -66.87 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.09 Total: 33.82 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.09 Total: 6.03 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -4.53 Total: -103.79 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.09 Total: -41.34 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.72 Total: 44.87 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.21 Total: -6.45 kcal Total: -68.94 2.07 -66.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.943 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds