Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99712 * 2 1 4 4 C 1.47202 * 109.46965 * 180.02562 * 3 2 1 5 5 C 3.40054 * 161.18875 * 359.97438 * 2 1 3 6 6 C 4.78777 * 168.18493 * 359.97438 * 2 1 3 7 7 N 1.46902 * 109.47294 * 33.27662 * 6 5 4 8 8 C 1.46896 * 111.00087 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47271 * 35.00061 * 8 7 6 10 10 C 1.52997 * 109.46908 * 274.99791 * 8 7 6 11 11 C 1.53006 * 109.47164 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47127 * 59.99836 * 11 10 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 15 15 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 16 16 C 1.34778 * 120.00288 * 84.99811 * 15 13 12 17 17 O 1.21285 * 119.99803 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00048 * 179.97438 * 16 15 13 19 19 S 1.80996 * 109.47139 * 179.97438 * 18 16 15 20 20 C 1.76191 * 100.00311 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99836 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00487 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00299 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99628 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46627 * 90.00454 * 24 22 20 26 26 H 1.48500 * 109.47029 * 210.00243 * 24 22 20 27 27 H 1.48499 * 109.47153 * 330.00454 * 24 22 20 28 28 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 29 29 H 1.08999 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46944 * 299.99649 * 1 2 3 31 31 H 1.08998 * 109.47375 * 60.00288 * 1 2 3 32 32 H 1.08997 * 109.47600 * 60.00128 * 3 2 1 33 33 H 1.09003 * 109.47125 * 299.99381 * 3 2 1 34 34 H 1.09001 * 109.46955 * 273.27725 * 6 5 4 35 35 H 1.08996 * 109.47206 * 153.27685 * 6 5 4 36 36 H 1.00899 * 110.99756 * 303.95353 * 7 6 5 37 37 H 1.09001 * 109.47375 * 300.00206 * 10 8 7 38 38 H 1.09000 * 109.47140 * 60.00224 * 10 8 7 39 39 H 1.08998 * 109.46505 * 299.99708 * 11 10 8 40 40 H 1.08996 * 109.46884 * 180.02562 * 11 10 8 41 41 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 43 43 H 0.97001 * 120.00197 * 264.99912 * 15 13 12 44 44 H 1.08999 * 109.46676 * 299.99939 * 18 16 15 45 45 H 1.08995 * 109.47091 * 60.00156 * 18 16 15 46 46 H 0.96993 * 120.00412 * 179.97438 * 23 22 20 47 47 H 1.08992 * 109.47554 * 59.99639 * 28 13 12 48 48 H 1.09004 * 109.47108 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6480 1.0965 -0.0005 6 6 6.1154 0.9803 -0.0004 7 7 6.5122 -0.2126 -0.7603 8 6 7.9735 -0.3608 -0.7823 9 1 8.3876 -0.0202 0.1667 10 6 8.5541 0.4780 -1.9225 11 6 10.0761 0.3232 -1.9458 12 6 10.4358 -1.1483 -2.1609 13 6 9.8551 -1.9872 -1.0207 14 1 10.2695 -1.6468 -0.0717 15 7 10.2001 -3.3960 -1.2263 16 6 11.3870 -3.8689 -0.7971 17 8 12.1697 -3.1278 -0.2410 18 6 11.7415 -5.3183 -1.0081 19 16 13.3872 -5.6421 -0.3278 20 6 13.5404 -7.3573 -0.7004 21 1 12.7382 -7.8736 -1.2069 22 6 14.6918 -8.0452 -0.3431 23 7 14.8064 -9.3264 -0.6219 24 14 16.0795 -7.1520 0.5323 25 1 15.8728 -7.2348 2.0005 26 1 17.3758 -7.7841 0.1785 27 1 16.0928 -5.7273 0.1138 28 6 8.3332 -1.8323 -0.9974 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 6.4729 0.8931 1.0256 35 1 6.5501 1.8666 -0.4625 36 1 6.0700 -1.0406 -0.3904 37 1 8.1400 0.1374 -2.8715 38 1 8.2975 1.5263 -1.7695 39 1 10.4904 0.6636 -0.9969 40 1 10.4897 0.9211 -2.7578 41 1 11.5201 -1.2587 -2.1770 42 1 10.0214 -1.4886 -3.1099 43 1 9.5743 -3.9886 -1.6714 44 1 11.0090 -5.9486 -0.5039 45 1 11.7396 -5.5412 -2.0750 46 1 15.6112 -9.8070 -0.3726 47 1 7.9188 -2.1726 -1.9463 48 1 7.9195 -2.4304 -0.1854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266048119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -45.964949 kcal Electronic energy + Delta-G solvation = -25567.874051 eV Core-core repulsion = 21749.838379 eV Total energy + Delta-G solvation = -3818.035672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.02895 -38.56739 -38.44518 -36.13278 -34.08631 -33.21919 -32.43273 -30.72124 -30.20502 -28.46021 -28.00143 -26.40915 -25.60504 -24.93883 -22.79152 -21.99293 -20.41543 -20.01491 -18.01231 -17.77782 -16.98341 -16.62736 -16.50342 -16.43223 -15.99127 -15.48026 -15.15325 -15.04069 -14.94590 -14.85175 -14.24465 -14.00227 -13.76779 -13.52454 -13.39719 -13.32390 -12.89113 -12.79801 -12.70499 -12.53183 -12.13416 -12.01477 -11.65863 -11.43707 -11.26583 -11.00874 -10.95313 -10.88415 -10.74967 -10.70004 -10.58321 -10.46136 -10.01799 -9.84806 -9.47885 -9.01186 -8.95044 -8.89277 -8.49395 -6.91033 -6.28306 -3.99953 1.89547 2.23880 2.76778 2.98353 3.28967 3.34010 3.39801 3.50908 3.60985 3.72836 4.06535 4.33642 4.47054 4.51569 4.61560 4.65248 4.73630 4.78645 4.81236 4.87113 4.89127 4.96131 5.00986 5.06493 5.10806 5.13940 5.15829 5.19361 5.23610 5.25466 5.35125 5.39350 5.64048 5.75852 5.77715 5.82120 5.91806 5.96134 6.02797 6.13561 6.19060 6.52447 6.53266 6.60962 6.88543 7.15355 7.63963 7.94739 8.42345 8.51199 9.17922 10.80965 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.001593 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.208547 B =17572.627715 C =18617.917696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.179 3.821 4 C -0.183 4.183 5 C -0.144 4.144 6 C 0.169 3.831 7 N -0.682 5.682 8 C 0.093 3.907 9 H 0.052 0.948 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.132 4.132 13 C 0.152 3.848 14 H 0.087 0.913 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C -0.128 4.128 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.348 0.652 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.399 0.601 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.079 0.921 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.880 23.916 -1.296 35.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.103 3.897 4 C -0.185 4.185 5 C -0.145 4.145 6 C 0.042 3.958 7 N -0.314 5.314 8 C -0.017 4.017 9 H 0.070 0.930 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.170 4.170 13 C 0.046 3.954 14 H 0.105 0.895 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.394 6.394 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.166 4.166 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.167 0.833 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.365 25.123 -0.958 35.010 hybrid contribution -0.673 -1.194 0.378 1.421 sum -25.038 23.929 -0.580 34.638 Atomic orbital electron populations 1.22807 0.80068 1.03392 1.00273 1.87983 1.20235 1.26793 1.95511 1.19045 0.83695 0.85518 1.01398 1.21648 0.92802 1.02120 1.01904 1.22159 0.93414 0.98261 1.00672 1.18909 0.84367 0.95509 0.97040 1.60466 1.07887 1.05639 1.57402 1.21477 0.86442 0.95235 0.98517 0.93042 1.21578 0.94781 0.99376 0.98858 1.21490 0.95403 0.96297 1.02320 1.21961 1.01954 0.94608 0.98510 1.20795 0.93480 0.81366 0.99724 0.89515 1.46030 1.19401 1.10756 1.62464 1.20279 0.80881 0.89640 0.77416 1.90694 1.48735 1.58944 1.41014 1.23288 1.04001 0.94667 1.05580 1.84770 1.14898 1.13708 1.78182 1.22325 1.07619 0.91905 1.45091 0.89405 1.24709 0.97711 0.94342 0.94499 1.69934 1.28476 1.07793 1.45505 0.86736 0.81732 0.82393 0.80994 1.19227 1.19938 1.15930 1.21960 0.95426 0.95806 1.03436 0.89107 0.93697 0.93646 0.90893 0.90790 0.92405 0.88392 0.83283 0.90988 0.92024 0.91774 0.91385 0.90974 0.91644 0.76708 0.88547 0.88469 0.91950 0.90232 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.23 10.66 -35.23 -0.38 -3.60 16 3 C 0.18 1.18 6.41 34.37 0.22 1.40 16 4 C -0.18 -1.69 13.73 -37.12 -0.51 -2.20 16 5 C -0.14 -1.31 13.60 -37.12 -0.50 -1.82 16 6 C 0.17 1.21 5.96 -6.61 -0.04 1.17 16 7 N -0.68 -5.21 6.28 -109.81 -0.69 -5.90 16 8 C 0.09 0.69 2.50 -67.72 -0.17 0.53 16 9 H 0.05 0.39 7.80 -51.93 -0.41 -0.01 16 10 C -0.11 -0.80 5.43 -26.73 -0.15 -0.95 16 11 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 12 C -0.13 -1.37 5.49 -26.73 -0.15 -1.52 16 13 C 0.15 1.64 2.45 -67.93 -0.17 1.47 16 14 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 15 N -0.73 -9.09 5.08 -53.81 -0.27 -9.36 16 16 C 0.53 9.29 7.81 -10.98 -0.09 9.20 16 17 O -0.52 -11.00 15.52 5.55 0.09 -10.91 16 18 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 21 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 24 Si 0.86 21.84 27.74 -169.99 -4.72 17.12 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 28 C -0.13 -1.03 4.66 -26.73 -0.12 -1.15 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.10 0.61 7.43 -51.93 -0.39 0.22 16 36 H 0.35 2.64 8.32 -39.29 -0.33 2.31 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 44 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 410.98 15.07 6.19 6.19 Total: -1.00 -35.23 410.98 -9.44 -44.67 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.16 Total: 1.21 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.28 Total: -7.97 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.19 Total: -41.12 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.29 Total: -14.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.23 -9.44 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266048119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.294 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds