Wall clock time and date at job start Sat Apr 11 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00259 * 2 1 4 4 C 1.47202 * 109.47120 * 179.97438 * 3 2 1 5 5 C 3.40060 * 161.19327 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18857 * 0.02562 * 2 1 3 7 7 N 1.46899 * 109.47313 * 349.90874 * 6 5 4 8 8 C 1.46894 * 110.99992 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46966 * 35.00197 * 8 7 6 10 10 C 1.53009 * 109.47347 * 274.99982 * 8 7 6 11 11 C 1.52994 * 109.46882 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47187 * 60.00442 * 11 10 8 13 13 C 1.52996 * 109.47272 * 299.99498 * 12 11 10 14 14 H 1.08997 * 109.47165 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47176 * 300.00195 * 13 12 11 16 16 C 1.34775 * 119.99894 * 274.99988 * 15 13 12 17 17 O 1.21276 * 119.99984 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00022 * 179.97438 * 16 15 13 19 19 S 1.80998 * 109.47116 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00013 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00102 * 179.72368 * 20 19 18 23 23 N 1.31634 * 120.00298 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99861 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47644 * 89.99884 * 24 22 20 26 26 H 1.48506 * 109.47143 * 209.99830 * 24 22 20 27 27 H 1.48501 * 109.47120 * 329.99545 * 24 22 20 28 28 C 1.53000 * 109.47115 * 155.00183 * 8 7 6 29 29 H 1.09003 * 109.46463 * 59.99869 * 1 2 3 30 30 H 1.08996 * 109.46983 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46826 * 300.00163 * 1 2 3 32 32 H 1.09002 * 109.46980 * 60.00202 * 3 2 1 33 33 H 1.08998 * 109.47294 * 299.99730 * 3 2 1 34 34 H 1.08999 * 109.47177 * 229.90642 * 6 5 4 35 35 H 1.08998 * 109.46812 * 109.90944 * 6 5 4 36 36 H 1.00901 * 110.99785 * 56.04914 * 7 6 5 37 37 H 1.08997 * 109.46742 * 60.00237 * 10 8 7 38 38 H 1.08991 * 109.46728 * 300.00087 * 10 8 7 39 39 H 1.08991 * 109.47445 * 300.00210 * 11 10 8 40 40 H 1.09000 * 109.47109 * 179.97438 * 11 10 8 41 41 H 1.09003 * 109.47325 * 179.97438 * 12 11 10 42 42 H 1.09001 * 109.47192 * 59.99627 * 12 11 10 43 43 H 0.97002 * 120.00447 * 94.99623 * 15 13 12 44 44 H 1.09001 * 109.47434 * 59.99478 * 18 16 15 45 45 H 1.08999 * 109.47072 * 299.99957 * 18 16 15 46 46 H 0.96995 * 120.00138 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.47192 * 60.00152 * 28 8 7 48 48 H 1.09000 * 109.46987 * 299.99857 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1891 0.0006 5 6 4.6481 1.0963 0.0005 6 6 6.1155 0.9800 0.0004 7 7 6.4960 -0.4179 0.2431 8 6 7.9568 -0.5724 0.2493 9 1 8.4143 0.3165 0.6836 10 6 8.4566 -0.7542 -1.1854 11 6 9.9781 -0.9144 -1.1789 12 6 10.3581 -2.1411 -0.3472 13 6 9.8584 -1.9595 1.0874 14 1 10.1288 -2.8336 1.6797 15 7 10.4729 -0.7645 1.6709 16 6 11.6909 -0.8437 2.2425 17 8 12.2780 -1.9044 2.2741 18 6 12.3232 0.3857 2.8422 19 16 13.9434 -0.0419 3.5265 20 6 14.4407 1.5324 4.1420 21 1 13.7894 2.3865 4.0296 22 6 15.6668 1.6735 4.7770 23 7 16.0386 2.8497 5.2364 24 14 16.7901 0.1946 4.9784 25 1 17.6910 0.0933 3.8023 26 1 17.6020 0.3539 6.2115 27 1 15.9702 -1.0393 5.0816 28 6 8.3363 -1.7994 1.0808 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 6.5300 1.6111 0.7866 35 1 6.5052 1.3002 -0.9658 36 1 6.0707 -1.0315 -0.4358 37 1 8.1862 0.1200 -1.7777 38 1 7.9990 -1.6430 -1.6196 39 1 10.4352 -0.0254 -0.7448 40 1 10.3341 -1.0444 -2.2009 41 1 11.4421 -2.2556 -0.3430 42 1 9.9010 -3.0303 -0.7814 43 1 10.0032 0.0839 1.6459 44 1 11.6844 0.7724 3.6362 45 1 12.4436 1.1457 2.0702 46 1 16.8957 2.9484 5.6798 47 1 7.8788 -2.6883 0.6465 48 1 7.9803 -1.6699 2.1028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266048121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:35 Heat of formation + Delta-G solvation = -67.711660 kcal Electronic energy + Delta-G solvation = -26019.211921 eV Core-core repulsion = 22200.233241 eV Total energy + Delta-G solvation = -3818.978680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28592 -39.49810 -38.93561 -36.90246 -34.74360 -34.65366 -33.80163 -31.77811 -30.97976 -29.62559 -28.71082 -27.83684 -26.82011 -25.43649 -23.53241 -22.75015 -22.30540 -20.28456 -19.91344 -18.51016 -17.98893 -17.44441 -17.20545 -17.05688 -16.94300 -16.89349 -16.42517 -16.12973 -15.76196 -15.63927 -15.52764 -15.00091 -14.94096 -14.67181 -14.16540 -14.04965 -13.79517 -13.68939 -13.45130 -13.34945 -13.26596 -13.19656 -13.02510 -13.00492 -12.58836 -12.51219 -12.17954 -11.86485 -11.75648 -11.51369 -11.38359 -11.19989 -11.16527 -11.07366 -10.93615 -10.52512 -10.48104 -10.06616 -9.36683 -8.98396 -8.51128 -6.21587 1.00350 1.29062 1.31563 1.47591 1.57170 1.61467 1.64905 2.24350 2.29784 2.73329 2.87245 2.92687 3.09111 3.58270 3.74460 3.78011 3.89415 4.04649 4.17284 4.18404 4.23973 4.25169 4.35721 4.40330 4.47457 4.48495 4.50777 4.54188 4.57053 4.61271 4.67205 4.72572 4.75223 4.84128 4.88222 5.07178 5.12212 5.13831 5.28876 5.35767 5.38247 5.59931 5.71103 5.96451 6.11736 6.13312 6.35762 6.50683 6.54519 6.94254 7.24389 8.61256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.001764 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.843694 B =15872.629214 C =16807.140973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.174 3.826 4 C -0.205 4.205 5 C -0.161 4.161 6 C 0.169 3.831 7 N -0.685 5.685 8 C 0.092 3.908 9 H 0.082 0.918 10 C -0.140 4.140 11 C -0.111 4.111 12 C -0.129 4.129 13 C 0.149 3.851 14 H 0.070 0.930 15 N -0.705 5.705 16 C 0.536 3.464 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.175 6.175 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.237 1.237 28 C -0.102 4.102 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.350 0.650 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.411 0.589 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.277 0.723 47 H 0.091 0.909 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.616 -5.062 -16.394 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.099 3.901 4 C -0.207 4.207 5 C -0.162 4.162 6 C 0.041 3.959 7 N -0.316 5.316 8 C -0.017 4.017 9 H 0.101 0.899 10 C -0.179 4.179 11 C -0.149 4.149 12 C -0.167 4.167 13 C 0.044 3.956 14 H 0.088 0.912 15 N -0.359 5.359 16 C 0.322 3.678 17 O -0.440 6.440 18 C -0.264 4.264 19 S 0.052 5.948 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.161 1.161 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.249 0.751 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.499 -6.805 -15.562 34.040 hybrid contribution 0.048 1.865 -0.539 1.942 sum -29.451 -4.941 -16.101 33.927 Atomic orbital electron populations 1.22993 0.78336 1.04160 1.01559 1.87919 1.22257 1.27823 1.95790 1.19280 0.82484 0.85328 1.03057 1.22441 0.94005 1.01825 1.02392 1.22725 0.94309 0.98384 1.00801 1.18995 0.83437 0.91210 1.02238 1.60487 1.08727 1.05619 1.56734 1.21545 0.86456 0.98722 0.95008 0.89948 1.22225 0.95765 1.02855 0.97054 1.21392 0.95896 0.97671 0.99943 1.21899 1.00363 0.99733 0.94735 1.21010 0.92957 0.87676 0.93940 0.91157 1.45894 1.17496 1.13675 1.58835 1.19910 0.81804 0.88848 0.77274 1.90682 1.63165 1.31265 1.58851 1.23286 0.98858 0.99934 1.04275 1.84703 1.19498 1.15633 1.75002 1.22475 1.07334 0.94484 1.43433 0.91998 1.25549 0.98300 0.98649 0.93373 1.70016 1.22815 1.24514 1.38144 0.85873 0.80250 0.81012 0.79272 1.18697 1.18344 1.16120 1.21690 0.91654 0.99356 1.01393 0.92276 0.88635 0.92511 0.89304 0.88938 0.87856 0.90897 0.83136 0.91029 0.90603 0.92454 0.91396 0.93977 0.89497 0.75137 0.87059 0.86987 0.91394 0.89046 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.67 10.66 -148.98 -1.59 -8.26 16 3 C 0.17 2.18 6.41 70.18 0.45 2.63 16 4 C -0.21 -3.70 13.73 31.13 0.43 -3.27 16 5 C -0.16 -2.83 13.60 31.12 0.42 -2.40 16 6 C 0.17 2.12 5.96 84.50 0.50 2.63 16 7 N -0.69 -8.82 6.22 -501.32 -3.12 -11.94 16 8 C 0.09 1.09 2.29 44.92 0.10 1.19 16 9 H 0.08 0.96 6.16 -2.39 -0.01 0.94 16 10 C -0.14 -1.48 5.17 30.60 0.16 -1.32 16 11 C -0.11 -1.63 5.77 30.59 0.18 -1.46 16 12 C -0.13 -2.40 5.60 30.59 0.17 -2.23 16 13 C 0.15 2.98 2.78 45.01 0.13 3.11 16 14 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16 15 N -0.70 -16.16 4.23 -442.47 -1.87 -18.03 16 16 C 0.54 18.14 7.81 87.66 0.68 18.83 16 17 O -0.56 -23.71 15.52 -3.02 -0.05 -23.76 16 18 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 19 S -0.17 -8.86 18.55 -56.49 -1.05 -9.90 16 20 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 22 C 0.05 2.75 5.50 84.86 0.47 3.21 16 23 N -0.92 -55.94 13.97 21.65 0.30 -55.64 16 24 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 28 C -0.10 -1.47 5.22 30.61 0.16 -1.31 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 1.20 8.06 -2.39 -0.02 1.18 16 35 H 0.07 0.69 7.44 -2.39 -0.02 0.68 16 36 H 0.35 4.22 8.45 -89.69 -0.76 3.46 16 37 H 0.07 0.66 7.45 -2.39 -0.02 0.64 16 38 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 39 H 0.06 0.95 7.60 -2.39 -0.02 0.94 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.41 7.14 6.87 -92.71 -0.64 6.51 16 44 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 45 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 46 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -76.87 406.68 0.29 -76.58 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.46 Total: 16.84 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 6.22 Total: -12.99 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.69 Total: -85.61 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.64 Total: -32.02 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.90 kcal Total: -76.87 0.29 -76.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266048121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.872 kcal (2) G-P(sol) polarization free energy of solvation -76.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds