Wall clock time and date at job start Sat Apr 11 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00003 * 336.84115 * 7 2 1 9 9 N 1.36938 * 119.99758 * 156.84153 * 7 2 1 10 10 C 1.46499 * 119.99840 * 320.87508 * 9 7 2 11 11 C 1.52996 * 109.47284 * 270.00238 * 10 9 7 12 12 C 1.53004 * 109.47158 * 180.02562 * 11 10 9 13 13 N 1.46490 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00316 * 179.97438 * 13 12 11 15 15 O 1.21552 * 119.99716 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00563 * 179.97438 * 14 13 12 17 17 C 1.40626 * 119.75343 * 359.73126 * 16 14 13 18 18 C 1.35732 * 120.83696 * 179.72489 * 17 16 14 19 19 C 1.40706 * 120.07732 * 0.52541 * 18 17 16 20 20 N 1.33802 * 120.85377 * 179.69502 * 19 18 17 21 21 C 1.31330 * 119.76133 * 180.02562 * 20 19 18 22 22 C 1.39762 * 120.71142 * 0.02562 * 21 20 19 23 23 N 1.31276 * 120.67358 * 0.02562 * 22 21 20 24 24 C 1.33823 * 119.73532 * 359.97438 * 23 22 21 25 25 C 1.38409 * 119.76075 * 179.97438 * 16 14 13 26 26 C 1.46499 * 119.99668 * 140.87600 * 9 7 2 27 27 C 1.52991 * 117.50075 * 4.00808 * 26 9 7 28 28 C 1.52993 * 117.50067 * 295.38288 * 26 9 7 29 29 H 0.97007 * 119.99580 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47109 * 30.00922 * 10 9 7 31 31 H 1.09000 * 109.46963 * 149.99846 * 10 9 7 32 32 H 1.08996 * 109.47035 * 300.00044 * 11 10 9 33 33 H 1.08991 * 109.47405 * 60.00127 * 11 10 9 34 34 H 1.08996 * 109.46898 * 299.99778 * 12 11 10 35 35 H 1.09000 * 109.47312 * 59.99471 * 12 11 10 36 36 H 0.97000 * 120.00044 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.58029 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.95698 * 180.25769 * 18 17 16 39 39 H 1.08002 * 119.64813 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.65868 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.24802 * 359.97438 * 25 16 14 42 42 H 1.09003 * 115.54322 * 149.71498 * 26 9 7 43 43 H 1.09002 * 117.50191 * 359.97438 * 27 26 9 44 44 H 1.09005 * 117.50085 * 145.01704 * 27 26 9 45 45 H 1.08999 * 117.49801 * 214.98303 * 28 26 9 46 46 H 1.08996 * 117.50002 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5355 -2.0996 0.3688 9 7 3.2969 -1.2502 -0.4658 10 6 3.6781 -0.4693 -1.6453 11 6 3.4613 -1.3096 -2.9053 12 6 3.8600 -0.4942 -4.1370 13 7 3.6531 -1.2991 -5.3434 14 6 3.9383 -0.7827 -6.5552 15 8 4.3677 0.3508 -6.6470 16 6 3.7300 -1.5952 -7.7728 17 6 3.2394 -2.9083 -7.6602 18 6 3.0347 -3.6716 -8.7636 19 6 3.3239 -3.1568 -10.0408 20 7 3.1338 -3.8978 -11.1386 21 6 3.4114 -3.3959 -12.3200 22 6 3.9048 -2.0942 -12.4446 23 7 4.1008 -1.3478 -11.3826 24 6 3.8254 -1.8367 -10.1676 25 6 4.0241 -1.0597 -9.0148 26 6 4.2921 -2.0825 0.2147 27 6 3.8112 -2.9462 1.3824 28 6 4.6659 -1.7057 1.6496 29 1 -0.4850 0.8401 -0.0004 30 1 3.0653 0.4306 -1.6988 31 1 4.7289 -0.1893 -1.5715 32 1 4.0741 -2.2094 -2.8517 33 1 2.4106 -1.5896 -2.9790 34 1 3.2475 0.4057 -4.1907 35 1 4.9110 -0.2146 -4.0630 36 1 3.3101 -2.2034 -5.2701 37 1 3.0189 -3.3131 -6.6834 38 1 2.6535 -4.6769 -8.6609 39 1 3.2576 -3.9958 -13.2048 40 1 4.1277 -1.6987 -13.4245 41 1 4.4040 -0.0520 -9.0966 42 1 5.0795 -2.4878 -0.4208 43 1 2.7544 -2.8949 1.6446 44 1 4.2822 -3.9202 1.5154 45 1 5.6993 -1.8635 1.9583 46 1 4.1718 -0.8383 2.0872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266171976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:39 Heat of formation + Delta-G solvation = 86.914937 kcal Electronic energy + Delta-G solvation = -27718.074727 eV Core-core repulsion = 23802.649959 eV Total energy + Delta-G solvation = -3915.424768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.84071 -39.95805 -37.54997 -37.29324 -35.57657 -35.19853 -33.74174 -32.11003 -31.36129 -31.01059 -29.78195 -26.48881 -25.16866 -24.84108 -23.76217 -22.66532 -21.72397 -21.39503 -21.24119 -19.67239 -19.00500 -18.68715 -17.50658 -16.77903 -16.54909 -15.85971 -15.76161 -15.54215 -15.32603 -15.12328 -15.06862 -14.60686 -14.22545 -14.05217 -13.99694 -13.67181 -12.91094 -12.76779 -12.51947 -12.34789 -12.19944 -12.16151 -12.14193 -12.10818 -12.05381 -11.21825 -11.11777 -10.88221 -10.68307 -10.41420 -10.17310 -9.96488 -9.76697 -9.58208 -9.50292 -9.47825 -9.45459 -9.12622 -8.95921 -8.54615 -6.78071 -6.09272 -3.52112 -0.36114 -0.02354 1.40549 1.97255 2.95687 3.01749 3.26326 3.43393 3.49267 3.54587 3.61974 3.69226 3.78778 4.29422 4.38283 4.44698 4.46346 4.58548 4.68424 4.71090 4.83046 4.92020 5.20575 5.23482 5.39719 5.41767 5.49705 5.59345 5.66625 5.74298 5.75420 5.79615 5.93874 5.97257 6.04791 6.09960 6.12832 6.28176 6.39178 6.45651 6.47293 6.69110 6.77521 6.83814 6.89675 7.08064 7.23576 7.40750 7.97837 8.07153 8.32949 8.91268 9.62062 10.02561 11.05347 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002046 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.249079 B =13683.134153 C =14128.639392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.041 3.959 3 Si 0.871 3.129 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.272 4.272 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.142 3.858 11 C -0.146 4.146 12 C 0.117 3.883 13 N -0.716 5.716 14 C 0.553 3.447 15 O -0.533 6.533 16 C -0.110 4.110 17 C -0.073 4.073 18 C -0.085 4.085 19 C 0.092 3.908 20 N -0.427 5.427 21 C 0.084 3.916 22 C 0.073 3.927 23 N -0.416 5.416 24 C 0.069 3.931 25 C -0.015 4.015 26 C 0.119 3.881 27 C -0.189 4.189 28 C -0.225 4.225 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 -8.444 -21.870 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.160 4.160 3 Si 0.700 3.300 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.400 4.400 8 H 0.100 0.900 9 N -0.290 5.290 10 C 0.016 3.984 11 C -0.186 4.186 12 C -0.007 4.007 13 N -0.367 5.367 14 C 0.339 3.661 15 O -0.411 6.411 16 C -0.115 4.115 17 C -0.093 4.093 18 C -0.105 4.105 19 C -0.032 4.032 20 N -0.141 5.141 21 C -0.092 4.092 22 C -0.103 4.103 23 N -0.130 5.130 24 C -0.055 4.055 25 C -0.035 4.035 26 C 0.011 3.989 27 C -0.227 4.227 28 C -0.265 4.265 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.194 0.806 40 H 0.195 0.805 41 H 0.173 0.827 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.533 -7.482 -21.634 24.430 hybrid contribution 0.143 0.507 0.023 0.527 sum 8.676 -6.975 -21.611 24.310 Atomic orbital electron populations 1.69871 1.06034 1.26942 1.50526 1.25516 0.95058 0.97794 0.97669 0.87066 0.80801 0.84648 0.77436 1.20938 1.22824 1.19115 1.18695 0.86300 0.94465 1.40588 0.90040 1.43659 1.07026 1.52065 1.26292 1.21086 0.97990 0.94106 0.85247 1.22397 1.02990 0.99372 0.93861 1.21549 1.01464 0.94831 0.82808 1.46024 1.66056 1.18572 1.06032 1.18099 0.78405 0.86384 0.83204 1.90803 1.45148 1.18387 1.86718 1.20082 1.02533 0.94948 0.93965 1.21115 0.95970 0.92506 0.99709 1.20697 0.99611 1.01027 0.89131 1.19690 0.97873 0.91528 0.94105 1.68747 1.12352 1.34661 0.98345 1.24178 0.93860 0.94750 0.96439 1.24130 0.95267 0.92163 0.98712 1.68690 1.11414 1.34877 0.98026 1.19448 1.00146 0.93046 0.92824 1.21243 0.93640 1.00083 0.88558 1.21173 0.93959 0.97233 0.86548 1.23058 1.01095 0.93439 1.05087 1.23373 0.98351 0.99593 1.05225 0.92552 0.92177 0.93796 0.92038 0.90355 0.91186 0.91465 0.76365 0.83986 0.83479 0.80566 0.80543 0.82679 0.89099 0.87921 0.90520 0.90844 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.97 55.49 0.78 -25.47 16 2 C 0.04 1.14 5.28 -17.43 -0.09 1.04 16 3 Si 0.87 21.54 25.32 -169.99 -4.30 17.24 16 4 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.27 -7.13 8.93 -15.06 -0.13 -7.26 16 8 H 0.08 2.32 6.86 -52.49 -0.36 1.96 16 9 N -0.57 -12.67 2.38 -165.67 -0.39 -13.06 16 10 C 0.14 2.81 4.56 -4.04 -0.02 2.79 16 11 C -0.15 -2.36 5.65 -26.73 -0.15 -2.51 16 12 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 13 N -0.72 -8.95 5.50 -61.25 -0.34 -9.28 16 14 C 0.55 7.61 7.77 -12.32 -0.10 7.51 16 15 O -0.53 -9.26 16.30 5.32 0.09 -9.17 16 16 C -0.11 -1.24 5.87 -104.99 -0.62 -1.85 16 17 C -0.07 -0.63 9.44 -39.58 -0.37 -1.01 16 18 C -0.09 -0.75 9.95 -39.55 -0.39 -1.14 16 19 C 0.09 0.96 6.59 -84.72 -0.56 0.40 16 20 N -0.43 -4.04 10.46 -10.74 -0.11 -4.15 16 21 C 0.08 0.53 11.21 -17.20 -0.19 0.33 16 22 C 0.07 0.49 11.22 -17.22 -0.19 0.29 16 23 N -0.42 -4.31 10.46 -10.81 -0.11 -4.42 16 24 C 0.07 0.77 6.58 -84.82 -0.56 0.21 16 25 C -0.01 -0.17 9.56 -38.69 -0.37 -0.54 16 26 C 0.12 2.29 6.57 -67.94 -0.45 1.84 16 27 C -0.19 -3.47 9.80 -26.74 -0.26 -3.73 16 28 C -0.22 -4.19 10.35 -26.74 -0.28 -4.46 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 1.34 3.45 -51.93 -0.18 1.16 16 31 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.40 3.89 6.46 -40.82 -0.26 3.62 16 37 H 0.14 0.87 6.35 -52.48 -0.33 0.54 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.16 1.88 7.61 -52.49 -0.40 1.48 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.10 2.14 6.44 -51.93 -0.33 1.81 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -33.77 382.97 -9.49 -43.26 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.11 Total: 5.67 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -4.76 Total: -6.38 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.18 Total: -56.38 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.30 Total: 17.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.77 -9.49 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266171976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.173 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds