Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99766 * 2 1 4 4 C 1.47195 * 109.47190 * 180.02562 * 3 2 1 5 5 C 3.40069 * 161.18549 * 359.97438 * 2 1 3 6 6 C 4.78783 * 168.18165 * 359.97438 * 2 1 3 7 7 N 1.46905 * 109.47080 * 304.88599 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47021 * 274.99736 * 8 7 6 10 10 C 1.52996 * 109.47260 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.46772 * 60.00221 * 10 9 8 12 12 N 1.46502 * 109.46968 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99677 * 275.00156 * 12 11 10 14 14 O 1.21280 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99538 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46917 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99809 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00289 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99510 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00577 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46756 * 89.99986 * 21 19 17 23 23 H 1.48499 * 109.46952 * 210.00035 * 21 19 17 24 24 H 1.48502 * 109.46936 * 330.00006 * 21 19 17 25 25 C 1.53003 * 109.47047 * 299.99909 * 11 10 9 26 26 C 1.52996 * 109.47023 * 60.00083 * 25 11 10 27 27 H 1.08999 * 109.46634 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47361 * 299.99970 * 1 2 3 29 29 H 1.08999 * 109.47128 * 60.00340 * 1 2 3 30 30 H 1.09001 * 109.46838 * 59.99720 * 3 2 1 31 31 H 1.08998 * 109.46811 * 300.00071 * 3 2 1 32 32 H 1.09001 * 109.47468 * 184.88809 * 6 5 4 33 33 H 1.08998 * 109.47292 * 64.88480 * 6 5 4 34 34 H 1.00901 * 110.99869 * 56.04839 * 7 6 5 35 35 H 1.09000 * 109.47473 * 34.99539 * 8 7 6 36 36 H 1.08996 * 109.47234 * 300.00507 * 9 8 7 37 37 H 1.09007 * 109.47106 * 60.00477 * 9 8 7 38 38 H 1.08996 * 109.47580 * 300.00502 * 10 9 8 39 39 H 1.08995 * 109.47412 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.46838 * 59.99827 * 11 10 9 41 41 H 0.96998 * 119.99706 * 95.00219 * 12 11 10 42 42 H 1.08998 * 109.46947 * 299.99393 * 15 13 12 43 43 H 1.09001 * 109.47198 * 59.99547 * 15 13 12 44 44 H 0.96992 * 120.00102 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46837 * 299.99990 * 25 11 10 46 46 H 1.08998 * 109.46944 * 179.97438 * 25 11 10 47 47 H 1.08995 * 109.47174 * 180.02562 * 26 25 11 48 48 H 1.08996 * 109.47449 * 59.99724 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.4775 1.1894 -0.0006 5 6 4.6480 1.0967 -0.0005 6 6 6.1153 0.9806 -0.0004 7 7 6.5409 0.1523 1.1357 8 6 8.0031 0.0146 1.1682 9 6 8.4274 -1.1369 0.2544 10 6 9.9503 -1.2800 0.2878 11 6 10.4038 -1.5716 1.7197 12 7 11.8621 -1.7080 1.7518 13 6 12.4344 -2.8944 1.4664 14 8 11.7421 -3.8492 1.1835 15 6 13.9345 -3.0348 1.5000 16 16 14.3910 -4.7340 1.0750 17 6 16.1455 -4.6166 1.1874 18 1 16.6078 -3.6782 1.4558 19 6 16.9332 -5.7305 0.9321 20 7 16.3698 -6.8744 0.6054 21 14 18.7934 -5.6059 1.0506 22 1 19.2237 -5.9272 2.4351 23 1 19.4151 -6.5659 0.1035 24 1 19.2199 -4.2254 0.7074 25 6 9.9796 -0.4201 2.6335 26 6 8.4567 -0.2770 2.6001 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.5584 1.9726 0.0871 33 1 6.4432 0.5171 -0.9309 34 1 6.0927 -0.7514 1.1123 35 1 8.4631 0.9405 0.8232 36 1 7.9674 -2.0629 0.5994 37 1 8.1046 -0.9290 -0.7658 38 1 10.4099 -0.3539 -0.0574 39 1 10.2525 -2.1006 -0.3629 40 1 9.9442 -2.4977 2.0649 41 1 12.4157 -0.9444 1.9784 42 1 14.3799 -2.3478 0.7805 43 1 14.2991 -2.8003 2.5001 44 1 16.9203 -7.6528 0.4274 45 1 10.4392 0.5060 2.2883 46 1 10.3023 -0.6281 3.6537 47 1 8.1544 0.5435 3.2507 48 1 7.9970 -1.2031 2.9453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266907141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = -47.219264 kcal Electronic energy + Delta-G solvation = -25386.569455 eV Core-core repulsion = 21568.479392 eV Total energy + Delta-G solvation = -3818.090063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.94483 -38.54025 -38.42498 -36.12568 -34.07187 -32.70619 -32.42036 -31.01037 -30.10847 -28.88335 -27.51045 -26.19737 -25.46795 -24.69367 -22.95035 -21.91718 -20.43681 -20.10329 -17.99341 -17.74539 -16.97042 -16.59020 -16.47784 -16.28836 -15.99131 -15.56613 -15.13784 -14.97957 -14.79888 -14.33579 -14.19941 -14.01152 -13.54052 -13.49178 -13.35565 -13.15398 -13.01788 -12.74665 -12.54780 -12.40381 -12.10041 -11.95534 -11.66837 -11.40076 -11.30696 -11.05857 -11.01757 -10.83475 -10.76084 -10.71619 -10.57057 -10.45101 -10.01133 -9.80319 -9.34813 -9.06293 -8.85607 -8.76357 -8.22491 -6.49014 -6.21006 -3.91429 1.95784 2.22993 3.05008 3.12127 3.22764 3.28462 3.32704 3.41246 3.68360 3.81159 4.11922 4.21200 4.41253 4.53479 4.62717 4.75648 4.76814 4.82582 4.88662 4.93442 4.96258 5.03709 5.10569 5.14081 5.14826 5.16296 5.17930 5.25902 5.27677 5.33533 5.50686 5.58655 5.66053 5.79651 5.85912 5.89985 5.90721 5.94795 6.15332 6.17054 6.21785 6.53824 6.58458 6.71157 6.93600 7.18058 7.60169 7.75793 8.35847 8.65269 9.24348 10.86442 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.001394 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.712341 B =20088.399881 C =20560.389514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.179 3.821 4 C -0.185 4.185 5 C -0.144 4.144 6 C 0.168 3.832 7 N -0.683 5.683 8 C 0.087 3.913 9 C -0.146 4.146 10 C -0.126 4.126 11 C 0.146 3.854 12 N -0.736 5.736 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.125 4.125 26 C -0.101 4.101 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.348 0.652 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.231 21.221 0.589 33.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.104 3.896 4 C -0.186 4.186 5 C -0.144 4.144 6 C 0.041 3.959 7 N -0.313 5.313 8 C -0.022 4.022 9 C -0.186 4.186 10 C -0.165 4.165 11 C 0.041 3.959 12 N -0.389 5.389 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.163 4.163 26 C -0.140 4.140 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.261 19.783 0.516 33.687 hybrid contribution 2.197 1.157 -0.314 2.503 sum -25.064 20.941 0.202 32.661 Atomic orbital electron populations 1.22804 0.80092 1.03371 1.00273 1.87983 1.20230 1.26873 1.95513 1.19046 0.83713 0.85470 1.01409 1.21645 0.92811 1.02889 1.01278 1.22194 0.93417 0.97893 1.00931 1.18898 0.84246 0.99423 0.93357 1.60589 1.07047 1.20708 1.42939 1.21685 0.86427 0.98175 0.95951 1.22238 0.96878 0.99520 0.99974 1.21861 0.94675 1.02379 0.97582 1.20914 0.80778 0.99350 0.94861 1.46088 1.06929 1.12788 1.73108 1.20311 0.90115 0.82140 0.75606 1.90696 1.64350 1.38090 1.46029 1.23541 0.93767 1.08066 1.05099 1.85392 1.05838 1.01934 1.90229 1.22873 0.91280 0.99546 1.54706 0.90952 1.24986 0.99532 0.94490 0.94517 1.70016 1.35954 1.00612 1.43731 0.86178 0.83095 0.78133 0.78154 1.20262 1.20747 1.19699 1.21803 0.96212 0.98200 1.00126 1.21412 0.94109 1.02690 0.95769 0.89131 0.93644 0.93702 0.90750 0.90888 0.88478 0.92287 0.83310 0.90076 0.91214 0.91895 0.91836 0.90924 0.89466 0.76949 0.89299 0.89273 0.92190 0.91401 0.90882 0.90770 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.30 10.66 -35.23 -0.38 -3.68 16 3 C 0.18 1.22 6.41 34.37 0.22 1.44 16 4 C -0.18 -1.74 13.73 -37.12 -0.51 -2.25 16 5 C -0.14 -1.34 13.60 -37.12 -0.50 -1.85 16 6 C 0.17 1.23 5.96 -6.61 -0.04 1.20 16 7 N -0.68 -5.36 6.22 -109.80 -0.68 -6.04 16 8 C 0.09 0.65 2.47 -67.71 -0.17 0.48 16 9 C -0.15 -1.27 5.17 -26.73 -0.14 -1.41 16 10 C -0.13 -1.34 5.50 -26.73 -0.15 -1.49 16 11 C 0.15 1.66 2.45 -67.92 -0.17 1.49 16 12 N -0.74 -9.60 5.08 -53.80 -0.27 -9.88 16 13 C 0.53 9.84 7.81 -10.98 -0.09 9.76 16 14 O -0.52 -11.67 15.53 5.56 0.09 -11.58 16 15 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.50 -17.43 -0.10 2.02 16 20 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 C -0.12 -1.02 5.39 -26.73 -0.14 -1.16 16 26 C -0.10 -0.78 5.53 -26.73 -0.15 -0.93 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 33 H 0.06 0.39 7.44 -51.93 -0.39 0.01 16 34 H 0.35 2.83 8.45 -39.29 -0.33 2.50 16 35 H 0.08 0.56 7.80 -51.93 -0.40 0.16 16 36 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 37 H 0.06 0.51 7.45 -51.92 -0.39 0.13 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 41 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 413.80 15.07 6.24 6.24 Total: -1.00 -35.71 413.80 -9.94 -45.66 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.14 Total: 1.61 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.30 Total: -9.35 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.22 Total: -41.44 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.29 Total: -15.26 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.71 -9.94 -45.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266907141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.561 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds