Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99766 * 2 1 4 4 C 1.47195 * 109.47190 * 180.02562 * 3 2 1 5 5 C 3.40069 * 161.18549 * 359.97438 * 2 1 3 6 6 C 4.78783 * 168.18165 * 359.97438 * 2 1 3 7 7 N 1.46905 * 109.47080 * 304.88599 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47021 * 274.99736 * 8 7 6 10 10 C 1.52996 * 109.47260 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.46772 * 60.00221 * 10 9 8 12 12 N 1.46502 * 109.46968 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99677 * 275.00156 * 12 11 10 14 14 O 1.21280 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99538 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46917 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99809 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00289 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99510 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00577 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46756 * 89.99986 * 21 19 17 23 23 H 1.48499 * 109.46952 * 210.00035 * 21 19 17 24 24 H 1.48502 * 109.46936 * 330.00006 * 21 19 17 25 25 C 1.53003 * 109.47047 * 299.99909 * 11 10 9 26 26 C 1.52996 * 109.47023 * 60.00083 * 25 11 10 27 27 H 1.08999 * 109.46634 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47361 * 299.99970 * 1 2 3 29 29 H 1.08999 * 109.47128 * 60.00340 * 1 2 3 30 30 H 1.09001 * 109.46838 * 59.99720 * 3 2 1 31 31 H 1.08998 * 109.46811 * 300.00071 * 3 2 1 32 32 H 1.09001 * 109.47468 * 184.88809 * 6 5 4 33 33 H 1.08998 * 109.47292 * 64.88480 * 6 5 4 34 34 H 1.00901 * 110.99869 * 56.04839 * 7 6 5 35 35 H 1.09000 * 109.47473 * 34.99539 * 8 7 6 36 36 H 1.08996 * 109.47234 * 300.00507 * 9 8 7 37 37 H 1.09007 * 109.47106 * 60.00477 * 9 8 7 38 38 H 1.08996 * 109.47580 * 300.00502 * 10 9 8 39 39 H 1.08995 * 109.47412 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.46838 * 59.99827 * 11 10 9 41 41 H 0.96998 * 119.99706 * 95.00219 * 12 11 10 42 42 H 1.08998 * 109.46947 * 299.99393 * 15 13 12 43 43 H 1.09001 * 109.47198 * 59.99547 * 15 13 12 44 44 H 0.96992 * 120.00102 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46837 * 299.99990 * 25 11 10 46 46 H 1.08998 * 109.46944 * 179.97438 * 25 11 10 47 47 H 1.08995 * 109.47174 * 180.02562 * 26 25 11 48 48 H 1.08996 * 109.47449 * 59.99724 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.4775 1.1894 -0.0006 5 6 4.6480 1.0967 -0.0005 6 6 6.1153 0.9806 -0.0004 7 7 6.5409 0.1523 1.1357 8 6 8.0031 0.0146 1.1682 9 6 8.4274 -1.1369 0.2544 10 6 9.9503 -1.2800 0.2878 11 6 10.4038 -1.5716 1.7197 12 7 11.8621 -1.7080 1.7518 13 6 12.4344 -2.8944 1.4664 14 8 11.7421 -3.8492 1.1835 15 6 13.9345 -3.0348 1.5000 16 16 14.3910 -4.7340 1.0750 17 6 16.1455 -4.6166 1.1874 18 1 16.6078 -3.6782 1.4558 19 6 16.9332 -5.7305 0.9321 20 7 16.3698 -6.8744 0.6054 21 14 18.7934 -5.6059 1.0506 22 1 19.2237 -5.9272 2.4351 23 1 19.4151 -6.5659 0.1035 24 1 19.2199 -4.2254 0.7074 25 6 9.9796 -0.4201 2.6335 26 6 8.4567 -0.2770 2.6001 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.5584 1.9726 0.0871 33 1 6.4432 0.5171 -0.9309 34 1 6.0927 -0.7514 1.1123 35 1 8.4631 0.9405 0.8232 36 1 7.9674 -2.0629 0.5994 37 1 8.1046 -0.9290 -0.7658 38 1 10.4099 -0.3539 -0.0574 39 1 10.2525 -2.1006 -0.3629 40 1 9.9442 -2.4977 2.0649 41 1 12.4157 -0.9444 1.9784 42 1 14.3799 -2.3478 0.7805 43 1 14.2991 -2.8003 2.5001 44 1 16.9203 -7.6528 0.4274 45 1 10.4392 0.5060 2.2883 46 1 10.3023 -0.6281 3.6537 47 1 8.1544 0.5435 3.2507 48 1 7.9970 -1.2031 2.9453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266907141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = -73.028277 kcal Electronic energy + Delta-G solvation = -25387.688617 eV Core-core repulsion = 21568.479392 eV Total energy + Delta-G solvation = -3819.209226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05021 -39.56739 -38.94894 -36.97630 -34.99399 -34.58295 -33.58173 -31.75871 -31.26501 -29.77748 -28.27834 -27.63355 -26.69634 -25.32333 -23.72029 -22.76413 -21.57153 -21.09627 -19.79815 -18.51219 -17.77074 -17.55483 -17.42678 -16.93164 -16.88313 -16.83830 -16.39770 -16.19844 -15.89428 -15.72019 -15.17073 -14.97578 -14.62405 -14.55713 -14.21212 -14.04437 -13.80508 -13.69264 -13.58023 -13.34967 -13.16387 -13.12085 -12.88945 -12.65600 -12.49906 -12.40330 -12.15802 -12.09275 -11.72421 -11.50505 -11.43817 -11.27299 -11.14174 -11.09552 -10.87638 -10.52220 -10.27096 -10.04292 -9.39635 -8.66672 -8.34570 -6.12770 1.27521 1.33430 1.42620 1.47634 1.57594 1.58726 1.63827 2.26512 2.31665 2.90613 2.99689 3.19315 3.33256 3.55085 3.69075 3.78885 3.95345 4.06191 4.18676 4.22541 4.25896 4.31990 4.39689 4.40593 4.44797 4.50476 4.51726 4.52440 4.54303 4.56402 4.60108 4.72702 4.78586 4.87058 4.88882 5.00192 5.11293 5.17766 5.23661 5.36953 5.39913 5.41809 5.58572 5.99743 6.12585 6.19844 6.29321 6.53658 6.56331 7.06752 7.29467 8.74729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.001394 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.712341 B =20088.399881 C =20560.389514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.174 3.826 4 C -0.206 4.206 5 C -0.163 4.163 6 C 0.169 3.831 7 N -0.686 5.686 8 C 0.096 3.904 9 C -0.140 4.140 10 C -0.120 4.120 11 C 0.144 3.856 12 N -0.709 5.709 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.113 4.113 26 C -0.098 4.098 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.344 0.656 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.832 24.565 1.200 35.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.099 3.901 4 C -0.207 4.207 5 C -0.163 4.163 6 C 0.041 3.959 7 N -0.316 5.316 8 C -0.013 4.013 9 C -0.180 4.180 10 C -0.160 4.160 11 C 0.039 3.961 12 N -0.362 5.362 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.073 5.927 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.151 4.151 26 C -0.137 4.137 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.882 23.199 1.144 35.527 hybrid contribution 1.927 0.192 -0.494 1.998 sum -24.955 23.391 0.651 34.210 Atomic orbital electron populations 1.22991 0.78300 1.04118 1.01639 1.87923 1.22331 1.28020 1.95805 1.19300 0.82427 0.85250 1.03162 1.22461 0.94041 1.02996 1.01212 1.22769 0.94324 0.97979 1.01262 1.19021 0.83324 1.00139 0.93395 1.60608 1.07091 1.20540 1.43337 1.21630 0.86324 0.98029 0.95353 1.22188 0.95215 0.99707 1.00864 1.21787 0.96234 1.01760 0.96188 1.21076 0.79093 0.99673 0.96251 1.45849 1.08067 1.11519 1.70787 1.20082 0.89281 0.83108 0.75637 1.90688 1.64989 1.40150 1.48676 1.23386 0.95241 1.02928 1.06548 1.85593 1.06987 1.09058 1.91021 1.23214 0.91328 1.00218 1.54690 0.89885 1.26127 1.05347 0.93875 0.93718 1.70185 1.38166 1.01609 1.44909 0.84958 0.75791 0.78791 0.78464 1.19282 1.20319 1.18122 1.21740 0.96585 0.97424 0.99379 1.21388 0.93593 1.02556 0.96113 0.88792 0.92320 0.92261 0.89038 0.88894 0.86879 0.91605 0.83783 0.88360 0.92671 0.91183 0.89831 0.94632 0.92452 0.74651 0.87249 0.87216 0.92009 0.88913 0.90499 0.89605 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.99 10.66 -148.98 -1.59 -8.58 16 3 C 0.17 2.21 6.41 70.17 0.45 2.66 16 4 C -0.21 -3.78 13.73 31.12 0.43 -3.35 16 5 C -0.16 -2.92 13.60 31.12 0.42 -2.49 16 6 C 0.17 2.20 5.96 84.49 0.50 2.70 16 7 N -0.69 -9.74 6.22 -501.31 -3.12 -12.86 16 8 C 0.10 1.22 2.47 44.92 0.11 1.33 16 9 C -0.14 -2.31 5.17 30.59 0.16 -2.15 16 10 C -0.12 -2.48 5.50 30.60 0.17 -2.31 16 11 C 0.14 3.12 2.45 44.99 0.11 3.23 16 12 N -0.71 -17.40 5.08 -442.50 -2.25 -19.65 16 13 C 0.53 19.69 7.81 87.66 0.68 20.37 16 14 O -0.57 -26.59 15.53 -3.03 -0.05 -26.63 16 15 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 16 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 17 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.80 5.50 84.86 0.47 1.27 16 20 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 C -0.11 -1.53 5.39 30.59 0.16 -1.36 16 26 C -0.10 -1.29 5.53 30.59 0.17 -1.12 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 1.10 8.05 -2.39 -0.02 1.08 16 33 H 0.07 0.77 7.44 -2.39 -0.02 0.75 16 34 H 0.34 5.41 8.45 -89.69 -0.76 4.65 16 35 H 0.10 0.98 7.80 -2.39 -0.02 0.96 16 36 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 37 H 0.07 1.07 7.45 -2.38 -0.02 1.05 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 41 H 0.42 7.10 8.60 -92.71 -0.80 6.30 16 42 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 44 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -81.29 413.80 -0.27 -81.56 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.59 Total: 21.61 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 6.17 Total: -15.21 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -5.08 Total: -88.65 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.64 Total: -35.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -81.29 -0.27 -81.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266907141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.529 kcal (2) G-P(sol) polarization free energy of solvation -81.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds